NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300011257

3300011257: Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_3, 0.2



Overview

Basic Information
IMG/M Taxon OID3300011257 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0121704 | Gp0173487 | Ga0151658
Sample NameMarine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_3, 0.2
Sequencing StatusPermanent Draft
Sequencing CenterToyama Prefectural University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size166072000
Sequencing Scaffolds24
Novel Protein Genes26
Associated Families24

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1
Not Available16
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → unclassified Flavobacteriia → Flavobacteria bacterium BBFL71
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameEnvironmental Dna From Seawater And Marine Sediment
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine benthic biomemarine benthic featuremarine sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)37.1316Long. (o)137.71844Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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