Basic Information | |
---|---|
IMG/M Taxon OID | 3300011247 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0121704 | Gp0173496 | Ga0151657 |
Sample Name | Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_3, 0.02 |
Sequencing Status | Permanent Draft |
Sequencing Center | Toyama Prefectural University |
Published? | N |
Use Policy | Open |
Dataset Contents | |
---|---|
Total Genome Size | 55910521 |
Sequencing Scaffolds | 31 |
Novel Protein Genes | 34 |
Associated Families | 33 |
Dataset Phylogeny | |
---|---|
Taxonomy Groups | Number of Scaffolds |
Not Available | 21 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium | 1 |
All Organisms → Viruses → Predicted Viral | 2 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp. | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → Mollicutes → Acholeplasmatales → Acholeplasmataceae → unclassified Acholeplasmataceae → Acholeplasmataceae bacterium | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus haemolyticus | 1 |
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Marinovum → unclassified Marinovum → Marinovum sp. | 1 |
All Organisms → Viruses → unclassified viruses → Circular genetic element sp. | 1 |
Ecosystem Assignment (GOLD) | |
---|---|
Name | Environmental Dna From Seawater And Marine Sediment |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment |
Alternative Ecosystem Assignments | |
---|---|
Environment Ontology (ENVO) | marine benthic biome → marine benthic feature → marine sediment |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
Location Information | ||||||||
---|---|---|---|---|---|---|---|---|
Location | Japan Sea near Toyama Prefecture, JAPAN | |||||||
Coordinates | Lat. (o) | 37.1316 | Long. (o) | 137.71844 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000502 | Metagenome / Metatranscriptome | 1073 | Y |
F002281 | Metagenome / Metatranscriptome | 575 | Y |
F004479 | Metagenome / Metatranscriptome | 436 | Y |
F005415 | Metagenome | 401 | Y |
F005580 | Metagenome | 396 | Y |
F005817 | Metagenome / Metatranscriptome | 389 | N |
F008944 | Metagenome / Metatranscriptome | 325 | Y |
F010694 | Metagenome / Metatranscriptome | 300 | N |
F010919 | Metagenome / Metatranscriptome | 297 | Y |
F013702 | Metagenome / Metatranscriptome | 269 | Y |
F014622 | Metagenome / Metatranscriptome | 261 | N |
F015324 | Metagenome / Metatranscriptome | 255 | Y |
F016813 | Metagenome / Metatranscriptome | 244 | Y |
F018560 | Metagenome / Metatranscriptome | 234 | Y |
F025412 | Metagenome | 202 | Y |
F034978 | Metagenome | 173 | Y |
F036268 | Metagenome | 170 | Y |
F048410 | Metagenome / Metatranscriptome | 148 | Y |
F049554 | Metagenome | 146 | Y |
F051932 | Metagenome | 143 | Y |
F056171 | Metagenome / Metatranscriptome | 138 | Y |
F057768 | Metagenome | 136 | Y |
F061021 | Metagenome | 132 | Y |
F061521 | Metagenome / Metatranscriptome | 131 | Y |
F064236 | Metagenome / Metatranscriptome | 129 | N |
F065214 | Metagenome | 128 | N |
F070648 | Metagenome | 123 | N |
F071259 | Metagenome | 122 | Y |
F071990 | Metagenome / Metatranscriptome | 121 | Y |
F072323 | Metagenome / Metatranscriptome | 121 | N |
F084115 | Metagenome | 112 | N |
F084724 | Metagenome / Metatranscriptome | 112 | Y |
F092857 | Metagenome / Metatranscriptome | 107 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0151657_1000896 | Not Available | 563 | Open in IMG/M |
Ga0151657_1006524 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium | 1691 | Open in IMG/M |
Ga0151657_1008179 | All Organisms → Viruses → Predicted Viral | 2280 | Open in IMG/M |
Ga0151657_1008387 | Not Available | 1189 | Open in IMG/M |
Ga0151657_1010919 | Not Available | 1503 | Open in IMG/M |
Ga0151657_1014716 | Not Available | 604 | Open in IMG/M |
Ga0151657_1015162 | Not Available | 630 | Open in IMG/M |
Ga0151657_1016523 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp. | 679 | Open in IMG/M |
Ga0151657_1016974 | All Organisms → Viruses → Predicted Viral | 1553 | Open in IMG/M |
Ga0151657_1023997 | Not Available | 823 | Open in IMG/M |
Ga0151657_1028235 | Not Available | 829 | Open in IMG/M |
Ga0151657_1030816 | Not Available | 721 | Open in IMG/M |
Ga0151657_1036952 | Not Available | 532 | Open in IMG/M |
Ga0151657_1037591 | Not Available | 506 | Open in IMG/M |
Ga0151657_1040879 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → Mollicutes → Acholeplasmatales → Acholeplasmataceae → unclassified Acholeplasmataceae → Acholeplasmataceae bacterium | 897 | Open in IMG/M |
Ga0151657_1042424 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 549 | Open in IMG/M |
Ga0151657_1045892 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus haemolyticus | 930 | Open in IMG/M |
Ga0151657_1046674 | Not Available | 531 | Open in IMG/M |
Ga0151657_1050889 | Not Available | 616 | Open in IMG/M |
Ga0151657_1055754 | Not Available | 678 | Open in IMG/M |
Ga0151657_1057103 | Not Available | 516 | Open in IMG/M |
Ga0151657_1058077 | Not Available | 525 | Open in IMG/M |
Ga0151657_1061041 | Not Available | 500 | Open in IMG/M |
Ga0151657_1064105 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 696 | Open in IMG/M |
Ga0151657_1069372 | Not Available | 574 | Open in IMG/M |
Ga0151657_1073004 | Not Available | 541 | Open in IMG/M |
Ga0151657_1074235 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Marinovum → unclassified Marinovum → Marinovum sp. | 774 | Open in IMG/M |
Ga0151657_1076351 | All Organisms → Viruses → unclassified viruses → Circular genetic element sp. | 541 | Open in IMG/M |
Ga0151657_1077751 | Not Available | 577 | Open in IMG/M |
Ga0151657_1079080 | Not Available | 737 | Open in IMG/M |
Ga0151657_1091388 | Not Available | 576 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
---|---|---|---|
Ga0151657_1000896 | Ga0151657_10008962 | F065214 | MSKRSNIIIKNGRTEILLYRHCDGYLTGAGQDLHDDLSNSDFDNVGQYFNIAKFTEKLLSQNSSYRIDNQLGGDIEYLYTFEFEDGYEHGDHYNRVKLKSIEVDQEHEYGR |
Ga0151657_1006524 | Ga0151657_10065243 | F071259 | VKHKQARIVFGVAISAAAIAVAVDHSKQRLPDPDKQLASQQAVIIIDEGEELPAENSGDCSKPTSSDRQASPCSL* |
Ga0151657_1008179 | Ga0151657_10081794 | F072323 | MVTSLTIALAISLTGQVDDKVCYKKCTSHNDDVIHLDVKYNSNLNTVKDYVNANYDEDVYEWVCQGEDEGFKHTITNKLTCDGTNHEEWEKYGNKGECYVCY* |
Ga0151657_1008387 | Ga0151657_10083871 | F071990 | MAEPTTRFRLIPQSTAVAAVDTAAERLAAIASESIVSTGDGNEADFGTIDISGGAANSSVLTILWDITADGGNTLAETFKLWLSDNGFDQAGSVLKVQPLSGGDNGAPSLTENYAANAGTGDYTFANMVEAEPGAINIWPTDEGTSMALSTASDDVVMWAMYCAIAAGERS |
Ga0151657_1010919 | Ga0151657_10109192 | F061021 | MATYERLDYGSPDGCQVGDSAAKVSVYGAVPVVQRPYSSAVHATAGLATSASFGATQLAAMQEIQFTLIGLGVWATA* |
Ga0151657_1014716 | Ga0151657_10147161 | F005415 | TLSDCQDQLREWASELAQREIERRPEGMKLKQLKDLKTKALDVVMESGTPDTLAIALNEVTKKIGLTWNTDVQALPNFKQAS* |
Ga0151657_1015162 | Ga0151657_10151622 | F014622 | MIASAVYGFVAAILVLVITFMIIMLTSRFEKAGYGIMYGSLFIKMVTLCGFTLAVKPHLSDAIIYAAIILISIMFSNVYLIIKIKK* |
Ga0151657_1016523 | Ga0151657_10165231 | F084115 | MKKFKFHYNTIGDCFYDIYCQPNCTKKEDLLKDMAGILNGELTADDVAKEIIQWVGERSDEGYLDDDCQISTSREVKEGSVSVPIAKQGRS* |
Ga0151657_1016974 | Ga0151657_10169743 | F084115 | MKKFKFHYNTIGDCFYDIYCQPNCTKKEDLLKDMAGILNGELTPEEFKKEILQRVGERSEECYLDEDCQIRRFDEVKRGSVSVPIAKQGSS* |
Ga0151657_1023997 | Ga0151657_10239972 | F000502 | MSEMIARLLMVLTGFVLAMLGIITFVHSGDHKMLGILISFAGVVSIFGGLPDNA* |
Ga0151657_1028235 | Ga0151657_10282351 | F061521 | MSEAMIKIEIERIVNLVTGFGWKKVEEKTLTGKVQITLEKVIPVTQG* |
Ga0151657_1030816 | Ga0151657_10308161 | F051932 | DITEQNCETITKLRWLQVKELAIKYSNDQEFGSEVRKLIKK* |
Ga0151657_1034210 | Ga0151657_10342102 | F015324 | MAIVKQVQKKVVMSRKDIIKFQLLTHCYINKITVSNSDLECLALLGVTGPMEFTHFFYDVF* |
Ga0151657_1036952 | Ga0151657_10369522 | F084724 | MKLTEYEENLILVSLEQMEEHQFIIYEAGDITEDTYNLRMEEVRTARTKIKQQ* |
Ga0151657_1037591 | Ga0151657_10375913 | F048410 | MVTIKSKDGYNVDVTGIYLKALEKTITPQEYKSQLNTITRTNKNT* |
Ga0151657_1040879 | Ga0151657_10408792 | F004479 | SGDKVFLQGNKVIKEAGHYPEKFKQQMDFLMCCDHPNFIDVKPLSETSYEMKRYSTWYDKILSQPMNTSLGQLESLISIIGKFDNIGSYVKTQDYFDKLQLRTGYTYEGKFDAVSAWGFVHGDLTVSNILHDKDFLFIDPRGTEEQNYYDYGKLMQSFVMEYESHIYNNPNEKYSKFCKEAEKVMYEWCDEYQLKFFLAVHLLGAVPFFELNERYELAGSFLKKGHELFDELEIKYTK* |
Ga0151657_1042424 | Ga0151657_10424241 | F049554 | VAKLPHARSEIQPSNVKAVATYGIDAYGEDLFLPFTDVGLTETALTFSTAVVTRDLEDSNQPMDDFPAVYSVTDAGVLLNEGDDTQFSQTYSFVPDMTAIIYAIHLVFPAVVTCSAFTSGTLNCGALHI |
Ga0151657_1042424 | Ga0151657_10424242 | F064236 | SASTGGGGLMQYNMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRYSKN* |
Ga0151657_1045892 | Ga0151657_10458922 | F056171 | MRKFTHKAIIAITYATVIGMTTLALSGIGFLIFGLITGQLNADFGIYK* |
Ga0151657_1046674 | Ga0151657_10466741 | F002281 | TRRSSDLTKRGDLMKIKHKIVAEHLGVKLRGNETFDELLKIEQQVKEHKERQERIDEEKANIQRVDAQTRGVKKW* |
Ga0151657_1050889 | Ga0151657_10508892 | F036268 | MKGINMKNKCEDCEGKGYYTDVISTGLSDPNDPYHEPHIERCDKCKVFGDDVKAKEYHDKIK* |
Ga0151657_1055754 | Ga0151657_10557542 | F010919 | KTDMKDTVNLPLDEFQKLYAIKLRLETYFSYMEDNRGVLKAIAPTFLDDAKSYIEEYNELTNEKV* |
Ga0151657_1057103 | Ga0151657_10571031 | F010694 | MSIPVIFDNPHVFFEEATKQNYTDAHDLFYRSMVEYLLDESIQYICTFIYNDYDKYNFEPLSDEDEQILSRDALLYFEFIEEYETCQLIFDLLYSED* |
Ga0151657_1058077 | Ga0151657_10580771 | F008944 | MKKFNGMESHLIIEALDCYVTHVEEDILELEKDGKRSIFAPGFYTNISNDLKYKVKSMTKKEKYLITD* |
Ga0151657_1061041 | Ga0151657_10610412 | F034978 | MDIDINATKDQIEEFKSSILWSDITKELEIWKEGFNDEMMSIVDETADNNSSTASVLLHIGDLNGRQKAVDYMLSILDVFLSILETKETKETEEEFDG* |
Ga0151657_1064105 | Ga0151657_10641052 | F005817 | MRSNLLSRLKPEFKKGLEDNKIRYPDMTNNIEFLLTQLFYYDDLTVRQVLNIFVFSDMEYLDRDSFNWRYGEDVFEIENNVA* |
Ga0151657_1069372 | Ga0151657_10693722 | F092857 | MLADKFLQEELNKFAKYDIQKSRNKLSKTEKNDNKTLQNSLVYDIELTTK* |
Ga0151657_1073004 | Ga0151657_10730041 | F016813 | MINLTKLPVLNENSEYLIDNSDYSELFERLNYNTEDYLIVYSYNSDFLEVIQELIQYNIEFSHHSCHLSDESYLLININK* |
Ga0151657_1074235 | Ga0151657_10742351 | F070648 | LKSFIDEAANKGVTLSEDVAKNMVNEVWANAKLPIGVMMNEGTKSGVVRLGSVPNFFLKSEAADLLSKKGDFVKTSGGKNLSDLTGVGEQVIKKLLGKAENPMSTIVEGTNALSIQVRLNQYLDDLVKQSNVLKKNWDAWDSGGRVGPEPRVPFLVDNPGEAKKYFGANAKN |
Ga0151657_1076351 | Ga0151657_10763511 | F005580 | SNMKKSIPHPSITGMASGLAIAAYLNAGKPTTTATGTSLGNVTVMTDGVIKDITDGQLGAAFNTLSGNAINMIASDAGRKTLVTAGGIAALGAFARRQFPQLKLGGSKLYFRI* |
Ga0151657_1076351 | Ga0151657_10763512 | F057768 | MATTITRTIDATPTDKAYFSLTDNMLSSSLGNIQVPQGSSRISRVDCAFDTTNAKGYQVVCRLLG |
Ga0151657_1077751 | Ga0151657_10777511 | F018560 | LHDALPI*KDYYLLIVKDISLGEFEKSELRHIIETIDNAI* |
Ga0151657_1079080 | Ga0151657_10790801 | F013702 | IINDMEIVEREACYLIDTIEHALERIVNYNDLTDDEMKSIKDMAIIMLQEWS* |
Ga0151657_1091388 | Ga0151657_10913881 | F025412 | MNYRELKWGALKSYATKLGINTKGMTKVELLECLAAMTEEAHEVEELKPFKGIKQEHPLFNEVEPYLPYLKAYKKLNAISREPKVNEAIATLFLKYIEQDKNIRLNLGCGICKQRYYQRMIAGYNRLVEEYGGERI* |
⦗Top⦘ |