Sample 3300011246

Overview

Basic Information
IMG/M Taxon OID	3300011246 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0121480 \| Gp0155996 \| Ga0137490
Sample Name	Glacer surface microbial communities from an Arctic cyroconite hole, Midre Lovenbreen, Svalbard, Norway (Sample 22)
Sequencing Status	Permanent Draft
Sequencing Center	University of Bristol
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	61826702
Sequencing Scaffolds	10
Novel Protein Genes	10
Associated Families	10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Metagenomes Of Arctic Soils
Type	Environmental
Taxonomy	Environmental → Terrestrial → Unclassified → Unclassified → Unclassified → Cryoconite Hole, Glacier Surface → Metagenomes Of Arctic Soils

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	polar biome → cryoconite hole → ice
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Midre Lovenbreen Svalbard, Norway
Coordinates	Lat. (^o)	79.48416667	Long. (^o)	12.09222222	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F008637	Metagenome / Metatranscriptome	330	Y
F023385	Metagenome / Metatranscriptome	210	Y
F042189	Metagenome	158	Y
F044449	Metagenome / Metatranscriptome	154	Y
F056330	Metagenome / Metatranscriptome	137	Y
F057774	Metagenome / Metatranscriptome	136	Y
F061998	Metagenome / Metatranscriptome	131	Y
F065820	Metagenome	127	Y
F086028	Metagenome / Metatranscriptome	111	Y
F087644	Metagenome / Metatranscriptome	110	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0137490_1000307	Not Available	9168	Open in IMG/M
Ga0137490_1000642	All Organisms → cellular organisms → Bacteria	5291	Open in IMG/M
Ga0137490_1000999	All Organisms → cellular organisms → Bacteria	4049	Open in IMG/M
Ga0137490_1001950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	2655	Open in IMG/M
Ga0137490_1002903	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2096	Open in IMG/M
Ga0137490_1003415	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	1926	Open in IMG/M
Ga0137490_1007086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1260	Open in IMG/M
Ga0137490_1010835	Not Available	954	Open in IMG/M
Ga0137490_1014330	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	780	Open in IMG/M
Ga0137490_1018136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	652	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0137490_1000307

Not Available

9168

Open in IMG/M

Ga0137490_1000642

All Organisms → cellular organisms → Bacteria

5291

Open in IMG/M

Ga0137490_1000999

All Organisms → cellular organisms → Bacteria

4049

Open in IMG/M

Ga0137490_1001950

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales

2655

Open in IMG/M

Ga0137490_1002903

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

2096

Open in IMG/M

Ga0137490_1003415

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales

1926

Open in IMG/M

Ga0137490_1007086

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium

1260

Open in IMG/M

Ga0137490_1010835

Not Available

954

Open in IMG/M

Ga0137490_1014330

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

780

Open in IMG/M

Ga0137490_1018136

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

652

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0137490_1000307	Ga0137490_10003076	F044449	MAEIGEPERVVRRERENEPAITPSQPVTTPELEPAK*
Ga0137490_1000642	Ga0137490_10006424	F057774	MVSVVVSIRMRKMFAEVRKTFSNAQRAEQDVRERQANWNF*
Ga0137490_1000999	Ga0137490_10009992	F065820	MEDDLKKGWEQLEEGLTKAMGKLSEAIEKAKAEMPDAMKGINEEYLRVQEMLDKAVDRLRK*
Ga0137490_1001950	Ga0137490_10019503	F056330	MPVDALLSLQSTVTKTATFSGAALILPGGTPRRGLKARVFYSAAANATGANAVQFSIDVSYDGGVTWNSDFLAPALNLTTTAQAGELAIPFEVSPTSVVNQIQIRLTSLFGGAGTVPTVTYSSDGVMLSRP*
Ga0137490_1002903	Ga0137490_10029031	F087644	LKSAWRETGYSPIGIVFDRSPATPDKLPFPTWKVSADWMEKGTFIEMMTPREMPKAVSLSISSHPAITRESENEALARDPIKGAMFLHPNGARRLTGMRVVAPNADRFPPAATYVAGLGLVKFDVGCQWLLDVTRDNGKQGVTKDLEPNLPLVIHY*
Ga0137490_1003415	Ga0137490_10034152	F042189	VAELYEVLLIDGGARWHVGWLVDDETETDLLLTDSGKVLLFGSRAALEHHAQEHRLALNDDLPDEVDLDLGGWLSEGAPEPSTAEVSELWHLLYDDPMAGGVLETEELGEAYDDLVEDVDDWFAQHGEAARRALASAVSRLRSAFRVV*
Ga0137490_1007086	Ga0137490_10070861	F008637	MTTAGPSEPTSPSAAHAWSHRIRKVGGYIQLGFAAFWLFRGGLSVDGISGVALATAGVALSLIVLGYALRVTAGLGRRPSGPEAKRIERSVNAATILELLASFAFPLIVIAAGHSDWVLPSIAVTIGPLLLWLDHLVDLPRFRPVGWALTVLPFVLIAVLSGSTLAAVTGLGAGALLLLTAAAGFHDLATLRPSTTHGAGRSRSRPRTT*
Ga0137490_1010835	Ga0137490_10108353	F061998	MTGLEKGVTAFLAGLIAVALATTLVGPGKQTPAVINSAGGAVSGSLLAAQGSH*
Ga0137490_1014330	Ga0137490_10143303	F023385	LRVIFNARRKTGRLDLEAIEMAVRSAMHQAGAAALTQLLQFAAPAADQRSIPCPCGQPAHYRELRAKALLTAVGKAEVSRPYYLCSHCHTG
Ga0137490_1018136	Ga0137490_10181362	F086028	MSESFDLELAAAQLRADSADVRILVKVLVDQLSDALGPRLQVERSGGRFRKSEKIKAITITMEDDQFDAVVDGSVLRCTIGHSSGGIRIRSEKVDMDAWLNRLIAVLKSEADHSQAVRQA

Scaffold ID

Protein ID

Family

Sequence

Ga0137490_1000307

Ga0137490_10003076

F044449

MAEIGEPERVVRRERENEPAITPSQPVTTPELEPAK*

Ga0137490_1000642

Ga0137490_10006424

F057774

MVSVVVSIRMRKMFAEVRKTFSNAQRAEQDVRERQANWNF*

Ga0137490_1000999

Ga0137490_10009992

F065820

MEDDLKKGWEQLEEGLTKAMGKLSEAIEKAKAEMPDAMKGINEEYLRVQEMLDKAVDRLRK*

Ga0137490_1001950

Ga0137490_10019503

F056330

MPVDALLSLQSTVTKTATFSGAALILPGGTPRRGLKARVFYSAAANATGANAVQFSIDVSYDGGVTWNSDFLAPALNLTTTAQAGELAIPFEVSPTSVVNQIQIRLTSLFGGAGTVPTVTYSSDGVMLSRP*

Ga0137490_1002903

Ga0137490_10029031

F087644

LKSAWRETGYSPIGIVFDRSPATPDKLPFPTWKVSADWMEKGTFIEMMTPREMPKAVSLSISSHPAITRESENEALARDPIKGAMFLHPNGARRLTGMRVVAPNADRFPPAATYVAGLGLVKFDVGCQWLLDVTRDNGKQGVTKDLEPNLPLVIHY*

Ga0137490_1003415

Ga0137490_10034152

F042189

VAELYEVLLIDGGARWHVGWLVDDETETDLLLTDSGKVLLFGSRAALEHHAQEHRLALNDDLPDEVDLDLGGWLSEGAPEPSTAEVSELWHLLYDDPMAGGVLETEELGEAYDDLVEDVDDWFAQHGEAARRALASAVSRLRSAFRVV*

Ga0137490_1007086

Ga0137490_10070861

F008637

MTTAGPSEPTSPSAAHAWSHRIRKVGGYIQLGFAAFWLFRGGLSVDGISGVALATAGVALSLIVLGYALRVTAGLGRRPSGPEAKRIERSVNAATILELLASFAFPLIVIAAGHSDWVLPSIAVTIGPLLLWLDHLVDLPRFRPVGWALTVLPFVLIAVLSGSTLAAVTGLGAGALLLLTAAAGFHDLATLRPSTTHGAGRSRSRPRTT*

Ga0137490_1010835

Ga0137490_10108353

F061998

MTGLEKGVTAFLAGLIAVALATTLVGPGKQTPAVINSAGGAVSGSLLAAQGSH*

Ga0137490_1014330

Ga0137490_10143303

F023385

LRVIFNARRKTGRLDLEAIEMAVRSAMHQAGAAALTQLLQFAAPAADQRSIPCPCGQPAHYRELRAKALLTAVGKAEVSRPYYLCSHCHTG

Ga0137490_1018136

Ga0137490_10181362

F086028

MSESFDLELAAAQLRADSADVRILVKVLVDQLSDALGPRLQVERSGGRFRKSEKIKAITITMEDDQFDAVVDGSVLRCTIGHSSGGIRIRSEKVDMDAWLNRLIAVLKSEADHSQAVRQA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300011246: Glacer surface microbial communities from an Arctic cyroconite hole, Midre Lovenbreen, Svalbard, Norway (Sample 22)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences