Sample 3300011241

Overview

Basic Information
IMG/M Taxon OID	3300011241 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0121480 \| Gp0155464 \| Ga0137476
Sample Name	Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 11 - S13.2.50.a - transect 2, age 50 years, surface depth).
Sequencing Status	Permanent Draft
Sequencing Center	University of Bristol
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	29749304
Sequencing Scaffolds	14
Novel Protein Genes	14
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Candidatus Nitrotoga → Candidatus Nitrotoga fabula	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2
Not Available	4
All Organisms → cellular organisms → Bacteria → Nitrospirae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Usitatibacteraceae → Usitatibacter → Usitatibacter palustris	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Metagenomes Of Arctic Soils
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → glacial feature → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Midre Lovenbreen, Svalbard, Norway
Coordinates	Lat. (^o)	78.92166667	Long. (^o)	12.07666667	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001578	Metagenome / Metatranscriptome	669	Y
F005682	Metagenome / Metatranscriptome	393	Y
F028177	Metagenome / Metatranscriptome	192	Y
F061640	Metagenome	131	Y
F061932	Metagenome	131	Y
F062663	Metagenome	130	Y
F063781	Metagenome / Metatranscriptome	129	Y
F064869	Metagenome	128	Y
F068282	Metagenome / Metatranscriptome	125	Y
F072619	Metagenome / Metatranscriptome	121	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0137476_100006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	5240	Open in IMG/M
Ga0137476_100285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2064	Open in IMG/M
Ga0137476_100643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Candidatus Nitrotoga → Candidatus Nitrotoga fabula	1659	Open in IMG/M
Ga0137476_101562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1252	Open in IMG/M
Ga0137476_101577	Not Available	1247	Open in IMG/M
Ga0137476_102978	Not Available	985	Open in IMG/M
Ga0137476_103033	All Organisms → cellular organisms → Bacteria → Nitrospirae	975	Open in IMG/M
Ga0137476_103692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	897	Open in IMG/M
Ga0137476_103916	Not Available	877	Open in IMG/M
Ga0137476_105046	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	786	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0137476_100006

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas

5240

Open in IMG/M

Ga0137476_100285

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria

2064

Open in IMG/M

Ga0137476_100643

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Candidatus Nitrotoga → Candidatus Nitrotoga fabula

1659

Open in IMG/M

Ga0137476_101562

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

1252

Open in IMG/M

Ga0137476_101577

Not Available

1247

Open in IMG/M

Ga0137476_102978

Not Available

985

Open in IMG/M

Ga0137476_103033

All Organisms → cellular organisms → Bacteria → Nitrospirae

975

Open in IMG/M

Ga0137476_103692

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

897

Open in IMG/M

Ga0137476_103916

Not Available

877

Open in IMG/M

Ga0137476_105046

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium

786

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0137476_100006	Ga0137476_1000065	F063781	MDVSVEIHCETCGSANYSLPEGNGDGGPIRCNDCGAPQGTIGELRAALLEQVLDHSAEALRRDLDRLLEAKL*
Ga0137476_100285	Ga0137476_1002852	F081526	MSYACPWCGKGRFSFWDKQSLGPTRTLNCPDCKRAVGVCWNRAQLAAIPAVALGFLGLIAGKVLFLTWPAVFLGGWIGVTVGMLITAPLYHLYVPLVKDN*
Ga0137476_100643	Ga0137476_1006433	F064869	MANDDQNNLYEEWDVEVAKRIACAVTSYQANIPFETLWEQSVNQAEPVGTFWLSIAKRIREELPKKPK*
Ga0137476_101562	Ga0137476_1015622	F061640	MNRKSLLVMLMVLVVSACAPTAPSNPADRFAGTWSGTMSFTDDANRKEDIIVTIPEGCTVGSVCGDLNNTTVSCNWEMTLGAISGDVFEYKFSKTLSGECPALGGGTLTLQPDGTLMREHKTPDFTASGILTQK*
Ga0137476_101577	Ga0137476_1015772	F062663	MEVEMEVINQDRIYTPARSTSPVGQNQPSRGKVHACKASQRGYQQACDHLKRAERDLAETAAFIAAALTTVTAVQAVISLARDKLELSKEVLQLAFQGYVVVFILIFLLGALRIRWAIGRRTQAEKEIDQTKKGIFEFCELPQWPRPEK*
Ga0137476_102978	Ga0137476_1029781	F005682	MTYEYDFEMVKRAYAEMARRAREKDEVRRLPRNGLPQQPQRQDALERQRFPA*
Ga0137476_103033	Ga0137476_1030331	F072619	MFLAGVRLRENDHTRRIAVQEVAPSDRTDLALGKESRGRDGAKPLLHGPAIVMGVAKESLSTPATAEQESPEWRTLVLCSIRSQKNVQVVACRFRIAKVELYGLAFLNNVSDRNGSGLLIRSNEVPNEEVASLEMTAVFIDDDAQMQRAVRIPALGAPHGFKDIL
Ga0137476_103692	Ga0137476_1036921	F068282	DRIVAIVRGTVNSVAEAKELHNTAMTKTISKARKFGMLSHQAYFRMAAPGSPEALEFLGVDVWMSAEGLGDYYGDEDFLAGFNHIFTGEAADSVWVHPEGNWTEW*
Ga0137476_103916	Ga0137476_1039162	F102696	MNMGLGAKSLALFAVSVLFLILITLFEASLAGMSLTAEKILSALLLVVPAVIGIVLGVLGINRREANRWMAILGILLNALFALFQIFVISFAG*
Ga0137476_105046	Ga0137476_1050462	F061932	MLTGLLLRKKGKTKTLVVLFVVSIMLLVGGILILIK*
Ga0137476_105604	Ga0137476_1056041	F028177	LFLPWAWMARLVPMWALGISLALVPLAAMLALALVIKDLNADDGENPLVTDDPLKWRKRTRLFQQVVVGLDTMLERWDSASQANRKRLDTVTESVEEVIKLTEAAVNDISKNFRIVVAKAHEQTEAAMSLLQRDNEGRGVLSLPEFIQAYDSQLVNVTSHMTSFSAAADEMASHQKRVSEHAKVMEETIDGLRHMASQISRIALDGSVAMTSQTLNSRDFVDMTDRIRAISAEAHELTRKTRHGLDAI
Ga0137476_106018	Ga0137476_1060182	F001578	MEEIRQEVDAMGWDGDDLAGKMEEVFERQQEAAAARANRGTSSVEERAKSATFESLRLSRSRIMSQLANATSPSHRTMLESALKSINDEMAK*
Ga0137476_106803	Ga0137476_1068032	F092375	MNLQNIGSTRPKLYPPKALLSMGPMERRSPNLSDAELRYIVIQVIG*
Ga0137476_106826	Ga0137476_1068262	F103463	MPKDIFMNRKTATKILSFIIVSSFFLPLFEWHGFEMTGLNYILSSQIPSYKYFLLLAPFAALLIFFDTQDERNFFFNSKIFSWIPLFSLALISTMRLSNGNGENNFYNNETYFSTINFGFWIMLFFSILLVIVKDSKRLFYQYEKNERDFFH*

Scaffold ID

Protein ID

Family

Sequence

Ga0137476_100006

Ga0137476_1000065

F063781

MDVSVEIHCETCGSANYSLPEGNGDGGPIRCNDCGAPQGTIGELRAALLEQVLDHSAEALRRDLDRLLEAKL*

Ga0137476_100285

Ga0137476_1002852

F081526

MSYACPWCGKGRFSFWDKQSLGPTRTLNCPDCKRAVGVCWNRAQLAAIPAVALGFLGLIAGKVLFLTWPAVFLGGWIGVTVGMLITAPLYHLYVPLVKDN*

Ga0137476_100643

Ga0137476_1006433

F064869

MANDDQNNLYEEWDVEVAKRIACAVTSYQANIPFETLWEQSVNQAEPVGTFWLSIAKRIREELPKKPK*

Ga0137476_101562

Ga0137476_1015622

F061640

MNRKSLLVMLMVLVVSACAPTAPSNPADRFAGTWSGTMSFTDDANRKEDIIVTIPEGCTVGSVCGDLNNTTVSCNWEMTLGAISGDVFEYKFSKTLSGECPALGGGTLTLQPDGTLMREHKTPDFTASGILTQK*

Ga0137476_101577

Ga0137476_1015772

F062663

MEVEMEVINQDRIYTPARSTSPVGQNQPSRGKVHACKASQRGYQQACDHLKRAERDLAETAAFIAAALTTVTAVQAVISLARDKLELSKEVLQLAFQGYVVVFILIFLLGALRIRWAIGRRTQAEKEIDQTKKGIFEFCELPQWPRPEK*

Ga0137476_102978

Ga0137476_1029781

F005682

MTYEYDFEMVKRAYAEMARRAREKDEVRRLPRNGLPQQPQRQDALERQRFPA*

Ga0137476_103033

Ga0137476_1030331

F072619

MFLAGVRLRENDHTRRIAVQEVAPSDRTDLALGKESRGRDGAKPLLHGPAIVMGVAKESLSTPATAEQESPEWRTLVLCSIRSQKNVQVVACRFRIAKVELYGLAFLNNVSDRNGSGLLIRSNEVPNEEVASLEMTAVFIDDDAQMQRAVRIPALGAPHGFKDIL

Ga0137476_103692

Ga0137476_1036921

F068282

DRIVAIVRGTVNSVAEAKELHNTAMTKTISKARKFGMLSHQAYFRMAAPGSPEALEFLGVDVWMSAEGLGDYYGDEDFLAGFNHIFTGEAADSVWVHPEGNWTEW*

Ga0137476_103916

Ga0137476_1039162

F102696

MNMGLGAKSLALFAVSVLFLILITLFEASLAGMSLTAEKILSALLLVVPAVIGIVLGVLGINRREANRWMAILGILLNALFALFQIFVISFAG*

Ga0137476_105046

Ga0137476_1050462

F061932

MLTGLLLRKKGKTKTLVVLFVVSIMLLVGGILILIK*

Ga0137476_105604

Ga0137476_1056041

F028177

LFLPWAWMARLVPMWALGISLALVPLAAMLALALVIKDLNADDGENPLVTDDPLKWRKRTRLFQQVVVGLDTMLERWDSASQANRKRLDTVTESVEEVIKLTEAAVNDISKNFRIVVAKAHEQTEAAMSLLQRDNEGRGVLSLPEFIQAYDSQLVNVTSHMTSFSAAADEMASHQKRVSEHAKVMEETIDGLRHMASQISRIALDGSVAMTSQTLNSRDFVDMTDRIRAISAEAHELTRKTRHGLDAI

Ga0137476_106018

Ga0137476_1060182

F001578

MEEIRQEVDAMGWDGDDLAGKMEEVFERQQEAAAARANRGTSSVEERAKSATFESLRLSRSRIMSQLANATSPSHRTMLESALKSINDEMAK*

Ga0137476_106803

Ga0137476_1068032

F092375

MNLQNIGSTRPKLYPPKALLSMGPMERRSPNLSDAELRYIVIQVIG*

Ga0137476_106826

Ga0137476_1068262

F103463

MPKDIFMNRKTATKILSFIIVSSFFLPLFEWHGFEMTGLNYILSSQIPSYKYFLLLAPFAALLIFFDTQDERNFFFNSKIFSWIPLFSLALISTMRLSNGNGENNFYNNETYFSTINFGFWIMLFFSILLVIVKDSKRLFYQYEKNERDFFH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300011241: Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 11 - S13.2.50.a - transect 2, age 50 years, surface depth).

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences