3300011200: Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 6 - S13.3.30.a - transect 3, age 5 years, surface depth)

Overview

Basic Information

• IMG/M Taxon OID: 3300011200
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121480 | Gp0155457 | Ga0137471
• Sample Name: Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 6 - S13.3.30.a - transect 3, age 5 years, surface depth)
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Bristol
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 16375348
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metagenomes Of Arctic Soils
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → glacial feature → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Norway: Midre Lovenbreen, Svalbard
• Coordinates
  • Lat. (^o): 79.10444444
  • Long. (^o): 12.27888889
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065744	Metagenome	127	Y
F067546	Metagenome	125	Y
F092942	Metagenome / Metatranscriptome	107	Y
F096250	Metagenome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0137471_100114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	2637
Ga0137471_102497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	975
Ga0137471_102585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	959
Ga0137471_104687	Not Available	699

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0137471_100114	Ga0137471_1001142	F067546	MTPVAARRAPVTVRTDDGAVVLVLSDALDHTVARVLIDAVTSAISTSPQRVDIDLRALVSWTDEGARALVACRELCRDLPDGLHYRTGRGPGREALLAAYA*
Ga0137471_102497	Ga0137471_1024972	F065744	MQDKVNAPARPKGPNASAIVAGLVAIVLAGLIIANETTAWNVDWSALGPGAIVVVGVVLAVIGAIGLVRRHDEV*
Ga0137471_102585	Ga0137471_1025852	F092942	MEEQHVRDRAEVLCAALVTGDIELATQDFSKELRQNLGEVLALLPLPLSEA
Ga0137471_104687	Ga0137471_1046872	F096250	MRAGLSAWLICSTICIISLAYGQLALSAYFLALSCVVPGFVAKQLRMRSRL*