3300011198: Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 7 - S13.1.40.a - transect 1, age 29 years, surface depth)

Overview

Basic Information

• IMG/M Taxon OID: 3300011198
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121480 | Gp0155460 | Ga0137472
• Sample Name: Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 7 - S13.1.40.a - transect 1, age 29 years, surface depth)
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Bristol
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 13376228
• Sequencing Scaffolds: 12
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria	4
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metagenomes Of Arctic Soils
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → glacial feature → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Norway: Midre Lovenbreen, Svalbard
• Coordinates
  • Lat. (^o): 79.1525
  • Long. (^o): 12.21555556
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000265	Metagenome / Metatranscriptome	1420	Y
F000835	Metagenome	869	Y
F004025	Metagenome / Metatranscriptome	456	Y
F005545	Metagenome / Metatranscriptome	397	Y
F008643	Metagenome	330	Y
F012561	Metagenome	279	Y
F013424	Metagenome / Metatranscriptome	271	Y
F014483	Metagenome	262	Y
F017363	Metagenome / Metatranscriptome	241	Y
F035205	Metagenome	172	Y
F045796	Metagenome / Metatranscriptome	152	Y
F049861	Metagenome	146	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0137472_100010	All Organisms → cellular organisms → Bacteria → Acidobacteria	6206
Ga0137472_100161	All Organisms → cellular organisms → Bacteria → Acidobacteria	3249
Ga0137472_100199	All Organisms → cellular organisms → Bacteria	3068
Ga0137472_100544	All Organisms → cellular organisms → Bacteria → Acidobacteria	2216
Ga0137472_100578	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	2172
Ga0137472_100753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1949
Ga0137472_101029	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1680
Ga0137472_101889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1215
Ga0137472_102073	All Organisms → cellular organisms → Bacteria → Acidobacteria	1157
Ga0137472_102663	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	996
Ga0137472_103710	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	785
Ga0137472_106382	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0137472_100010	Ga0137472_1000103	F004025	MRKSILISLTLLLLCSVAAMGQPAQTVQPPQNLTFYYDYAVFPGKEAEFMKLVDTVGAPVRDKLMAEGVVLAWGVETPILRYPGGTTHLIWFSVANWAGVERVLNGMEAQLARLAAEEAKPFNARARKQSGGMTTAERQRAVFDMSKTRDWLIRDLVANYGPNPAPGVLPFIRYNFVKAKPGKGGDYRRTWEKYNKPIFDKLVADGVVVAFGLAAEDVKTDGEWTHFVWIATPTMAAADKIAPAFAADRAKRSEKERETMTEAFLDATEPDKARSIVTRSRIFKAAPQK*
Ga0137472_100161	Ga0137472_1001612	F000835	MDELTKRVLGSFGHWGKDSLDLHTLFEAGGNDPDARTRVFDIVERLVKEGLLEEQGNDFYSLTDRGKGAIKLPV*
Ga0137472_100199	Ga0137472_1001992	F005545	MTDSEDNSTNEVDDKGTSETEGRALLKRLCDDGFEGSDEKLAVALGRPVEEIEGWVKGTEPVDDDVVIKARGIAEQRGIVIE*
Ga0137472_100544	Ga0137472_1005442	F017363	MNTLFAMRRANGDWFALDDDGLFRVPVFRSSGAAMVARSRDSGMECFRPVSLDETAFRNLTTTDEGKACFWLVDDPLMNPNRGRALDKNGLEQLMSKGAARVLNTEVIR*
Ga0137472_100578	Ga0137472_1005781	F008643	SIGGPQVLAQTASSSPSQEEKRTDETNLDTQLYLLVATNQEVDDGKLPAALDPVVKQLRTSLPFKNYKLMTTLVNRVKNEGRLSLKWIGGPLLASAAASANTPSFNEFRVNSVKLVTDDGGRQVVRMDGFVFGARIPIVTGTAIASNGPAAPIINYENTGLNTDISIREGEAVVVGTLNVGPSGDAIILVMSAKRANK*
Ga0137472_100753	Ga0137472_1007533	F045796	MTLSINLQKLALSVFGALVASSLFISAAVGPVSVI*
Ga0137472_101029	Ga0137472_1010292	F000265	LKIQTVNKGKVNMPELRGVQATEDVKAEWARAYEIYLSAPGDRYDKKNDRTARIDSVAKELQLTRKQAKRRVRNFEAWQRNISKKLVSP*
Ga0137472_101889	Ga0137472_1018892	F035205	VKFGLTWSQRRAFALSVLGFQVMVWADVLLNDGRFGGSWRTALVGVGLLGMAAATWWIGTSATRRGLVIHALPSMTIPWEDVHEIEVDISLGISTVVVHHGKSRKTRLAAPTTGPMGRDADFQEKVRVLRTFWAANRTSHQAA*
Ga0137472_102073	Ga0137472_1020731	F012561	MTASLIYLIDNTIDGQGASPRELRAALTRMHEGLEILTEPYHAVSLERLEAVRPSHIVLSGQSHPWDQYAPASLDGVVDVIRK
Ga0137472_102663	Ga0137472_1026632	F014483	MKASSVKSFSKKLSCPSSSLLLSFRIQVLAPEINFLVRHHLAGCDFCYCELSLLALYAAPLKGECRTPDLPINLRILAESILGHVKSEKVVGENS
Ga0137472_103710	Ga0137472_1037102	F013424	MAQGSGKAPKQITWIICLVLYVVALLAHFAVVKVGGDIAAWSWIIGFGLLLAAVQVKGL*
Ga0137472_106382	Ga0137472_1063821	F049861	EEKSFRPIFLDVEDSPELLKVISTYNDMFGRLFETLERSVGEDQARDIFMTILQNAETDELWAGVFFDQFGRFDENMLIANISELPFEKRKAVLDEGLNTLLSVQLFEVSQHLDQAGKVDVFRFISDQKASLEKATA*