3300011007: Basal ice microbial communities from Matanuska glacier, Alaska, USA - MataB

Overview

Basic Information

• IMG/M Taxon OID: 3300011007
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121657 | Gp0160588 | Ga0139299
• Sample Name: Basal ice microbial communities from Matanuska glacier, Alaska, USA - MataB
• Sequencing Status: Permanent Draft
• Sequencing Center: Tsinghua University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 223379640
• Sequencing Scaffolds: 32
• Novel Protein Genes: 33
• Associated Families: 29

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	8
All Organisms → cellular organisms → Bacteria → PVC group	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8
Not Available	6
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Basal Ice Microbial Communities From Matanuska Glacier, Alaska, Usa - Matab
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Ice → Glacier → Basal Ice → Basal Ice Microbial Communities From Matanuska Glacier, Alaska, Usa - Matab

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → glacier ice field → ice
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Matanuska glacier, Alaska, USA
• Coordinates
  • Lat. (^o): 61.6558
  • Long. (^o): 147.5811
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002347	Metagenome / Metatranscriptome	568	Y
F002525	Metagenome / Metatranscriptome	552	Y
F005365	Metagenome / Metatranscriptome	403	Y
F007380	Metagenome / Metatranscriptome	352	Y
F008304	Metagenome / Metatranscriptome	335	Y
F011178	Metagenome / Metatranscriptome	294	Y
F012756	Metagenome / Metatranscriptome	277	Y
F013424	Metagenome / Metatranscriptome	271	Y
F016728	Metagenome / Metatranscriptome	245	Y
F019830	Metagenome	227	Y
F023385	Metagenome / Metatranscriptome	210	Y
F025775	Metagenome	200	Y
F029726	Metagenome	187	N
F036751	Metagenome	169	Y
F036991	Metagenome / Metatranscriptome	169	Y
F039817	Metagenome	163	Y
F041174	Metagenome / Metatranscriptome	160	Y
F050966	Metagenome / Metatranscriptome	144	Y
F052685	Metagenome / Metatranscriptome	142	Y
F053654	Metagenome	141	Y
F061953	Metagenome / Metatranscriptome	131	Y
F068263	Metagenome	125	Y
F075470	Metagenome	119	Y
F078707	Metagenome / Metatranscriptome	116	Y
F086100	Metagenome	111	Y
F087395	Metagenome	110	Y
F090348	Metagenome / Metatranscriptome	108	Y
F099094	Metagenome / Metatranscriptome	103	Y
F103261	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0139299_1001537	All Organisms → cellular organisms → Bacteria	3111
Ga0139299_1001690	All Organisms → cellular organisms → Bacteria → PVC group	3126
Ga0139299_1002921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2745
Ga0139299_1010042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	674
Ga0139299_1015429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	1032
Ga0139299_1019092	All Organisms → cellular organisms → Bacteria	1895
Ga0139299_1020995	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	863
Ga0139299_1021058	Not Available	556
Ga0139299_1028616	Not Available	707
Ga0139299_1045519	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	913
Ga0139299_1047778	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1066
Ga0139299_1048243	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	596
Ga0139299_1051155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1230
Ga0139299_1051661	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	919
Ga0139299_1057700	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	607
Ga0139299_1060706	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	595
Ga0139299_1064907	All Organisms → cellular organisms → Bacteria	1431
Ga0139299_1068988	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	696
Ga0139299_1075806	Not Available	737
Ga0139299_1087068	All Organisms → cellular organisms → Bacteria	1176
Ga0139299_1108904	All Organisms → cellular organisms → Bacteria	511
Ga0139299_1125163	All Organisms → cellular organisms → Bacteria	2635
Ga0139299_1128919	Not Available	1622
Ga0139299_1132726	Not Available	4475
Ga0139299_1136479	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	695
Ga0139299_1144361	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	819
Ga0139299_1145828	All Organisms → cellular organisms → Bacteria	674
Ga0139299_1152821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	806
Ga0139299_1164989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans	2175
Ga0139299_1171114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1375
Ga0139299_1184097	Not Available	888
Ga0139299_1188266	All Organisms → cellular organisms → Bacteria	1310

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0139299_1001537	Ga0139299_10015373	F087395	MSPQLHLPLFLAAFVALQGLLTRWSYRTSGSAPTALLVALLPLLGLPYQLWQLRSRLLDNHIAGAITYLALITACFGFYFLMPADETPWMLIHTMAIFAFLGTANVIGTSLKD*
Ga0139299_1001690	Ga0139299_10016902	F087395	MSPELHLPIFLAAFVSLQGLLTLWSYRTSGSAPTALLVALLPLVGLPYQLWQLRSRLFDNHIAGTITYLALITACFGFYLLMPADETPWMLIHTMAIFAFLGTANVIGTGLKD*
Ga0139299_1002921	Ga0139299_10029211	F068263	MPVAAEVYRPISVMDELSSGDIAYLSLARTRLAGETPPGDEFDPAGRIPAYPRPALLPLPHGREVAVDTMFALVVTHSCEIDRQENLDATAEHFDCRLTVAPIVSEPAVRLVASGGEGQTVSWSAIEANGPVASLYLPPIDDVSTLAPDVDPLPWPRSFADLRGLTTVSRGMVLADRLCGLTPEYLVTLQRQLARFFTWRDLARHELVEALVGRRVVGAIPLNARGDRLRVALTADDGSSLTVEVRAR*
Ga0139299_1010042	Ga0139299_10100421	F016728	MTLFWKGGLTVCVTGAGAGVDSVREQEKPEARKMLENAAESHTSGARFVG
Ga0139299_1015429	Ga0139299_10154291	F041174	LDFFQGRNRNLVAVVVTADGRRVNVPLRDLAPSDVSLLDLLRSLLVGLESLLGLLITGSRRENGGTRRDGSR*
Ga0139299_1019092	Ga0139299_10190923	F087395	LSAELHLPIFLAAFVALQVLLTLWSYRTSGSAPTALLVALLPLVGLPYQLWQLRSRLFDNHIAGTITYLALFTACFGFYFLMPADETPWMLIHTMAIFAFLGTANVIGTSLKD*
Ga0139299_1020995	Ga0139299_10209952	F052685	MGLQRGTIVKRTQTARVRKALEYVKRRLKLDLEFVVQPGEVHDQFGLLDIERSGRGTEDRKVWIVSFDTELVSKESLAALRRHAFHEVLHALTWPLFDEAEAAIRRVPDSKVRRELMDRSIDARENVVYELERKIGPLCFPSLPWVDP*
Ga0139299_1021058	Ga0139299_10210581	F008304	TADVAGVGTARRTLAAAGYGTDKGIFGYGRVGDTGQSMTNLVTNRGVVGADVTGVGTARWGLACAGYGDDKAIFGYGHAPPDQVSMTNLVSKTGVVSANVAGVGSARDALACASYGNDKAIFGYGYTSANVSMTNLVSKTGVVSADVTGVGTARRGLAATVYGFDKALFGYGWNGTDPFSMTNLV
Ga0139299_1028616	Ga0139299_10286162	F019830	VNKRIGPITLDRETADRITLLNLKEYKSYLTKELATWRKNPRTVDDPDGVWLHPDDVAGNTVAINALSLIIKHFGG*
Ga0139299_1045519	Ga0139299_10455191	F103261	MSRVMLTASEARSKSLQDIYVLREIRDLEEKIILAAAEGKVEVTVVSTSTMAKITSDTGYLLATEYFNVWNGTRDDRQKLLQMAKVTQYFSDLGYAIERQINPGTLTTLMWILAW*
Ga0139299_1047778	Ga0139299_10477782	F090348	MMAASPINDRWQADMARLIDPCTDPATGFHRRLEEVFRLD*
Ga0139299_1048243	Ga0139299_10482431	F007380	IDGQLTIRALAGLSDLTEFEVSRIMFQLLSARMIEEVTREKSYRPIFLDVEDSPELLKVISTYNGMFEYLYRALDKSIGEENAREIFTTTLQSTNEDELWNGVFFDQYGRFDENMLLANISELPFEQRKTVLDEGLNTLLSIQLFEVSQHLDATGKVDVFRFISDQKAQLEAAVAG*
Ga0139299_1051155	Ga0139299_10511552	F053654	VNTNADASETTNFEILTRAAIRLNEAERSVRIAAIRLNSLVPGVPLRYGVEATRRLRAADAELEAARVAYDAAQDLPAPLD*
Ga0139299_1051661	Ga0139299_10516612	F075470	NFDQFNLSAQEGYLISLIDGRLDLQKLMIISPFDQFTTLFYFAKLQQQRAILLPQ*
Ga0139299_1057700	Ga0139299_10577001	F036751	MSLVMQLKMSIHPPRLDGKEELIGPDPSVSKVKGVMFGARKQFILDTAGEEGLTSILAKLSPKTAMNLKTPLASSWCDFGSLVELDRAIDETFKGKYPHVLILMGAASAELGIGKVYRSLDSEELTSFLEKNAMFHNQYQKFGKVKFEKTPKGARMVYSGGRYNII
Ga0139299_1060706	Ga0139299_10607062	F039817	MQDETSRRLDERTGRHRCVKCLEETPDEPYFRNDHICDRCAADDEYPLQSTPDAAATAPSTSK*
Ga0139299_1064907	Ga0139299_10649072	F011178	MRITIEDRGTTLRDRLRERLERAAGLRCTEHGQTVLAVTIHGFDNGWFDANWTTCCEGLTQQAVAIVKERC*
Ga0139299_1068988	Ga0139299_10689882	F086100	HQIEQALETLWRLLEPPADRRSQFRAVHREPFSDALALLELYAYSSGKYLDTFLQWQEFSTRVRRGIEEAAPAPKKKRRRR*
Ga0139299_1075806	Ga0139299_10758062	F087395	VNPELHLPIFIAAFVALQLLLTLWSYRTSGSAPTALLVALLPLVGLPYQLWQLRSRLFDNHIAGTITYLALLTACFGFYFLMPDDETPWMLIHTMAIFAFLGTANVIGTSLKD*
Ga0139299_1087068	Ga0139299_10870682	F099094	MDGLGRAIGDGIGGLVGGAMDAVGSAISGAIGALGAALPAGALPVIGIAAALLLLWLVFKR*
Ga0139299_1108904	Ga0139299_11089042	F013424	MANQGKAPKQITWIICLILFIIALASHFGVVNLGNGIGDWAWIIGYAILLVAVQVRGL*
Ga0139299_1125163	Ga0139299_11251632	F036991	MSGIVAQHLSGLRCYQEVTDETDGDTTGDPEDAI*
Ga0139299_1126146	Ga0139299_11261461	F029726	SEPMTRKFLQNYELYKSEPIPKPLIPSMIKARVPVWLLVGALAAQYAINSTNKPSEPNCRMNVQRVHQSTYSLEFQKLSEAKLKISTLCDVPQAYTSLTVKFEEVLPNRGNKVAKVISNIIARPRPDRENYVLIENLTVPCNGKGKAEYLGQAYGQVHLKDSRIVDVSGGSDKSNPLNCRISAK*
Ga0139299_1128919	Ga0139299_11289191	F050966	MSGSRWQGMKTRYGDGTEALSEEMESNRSATPKSRRHRLTLPPDWWDSARF
Ga0139299_1132726	Ga0139299_113272610	F078707	MIDNTLKWTATTFLFIGTIINSLGYYPAGPLVLSVGGSIWLIVAIRWREASLIATNCVMLLATAIGLAYRHLN*
Ga0139299_1136479	Ga0139299_11364791	F005365	MMADPNELAVRIQELVDQRLTLEKQLQDEKSEMSDAQSWSYDEQYNGIQRQLSALFRTASDDAPRITIMLELMRILENRLVYLQHFVVEPTADHRVLAQLVTQFIDQTSDARSGVLTNLEAIYYRAVAALYAGDL
Ga0139299_1144361	Ga0139299_11443612	F023385	LLRVIFQDRRKTGRLDLEAIEMAVRSAMHSAGATALSELLQFPAPASDQRRLPCPCGHHAHYRELRSKPVLTAVGQ
Ga0139299_1145828	Ga0139299_11458281	F013424	MNKTSAPKVITWIICLVLYIVALLSHFGVIHPGAEVAVWSWIIGYALLLIA
Ga0139299_1152821	Ga0139299_11528211	F002525	EQEKPEARKMLVKRADSHKSGARFVRRLYALRLAG*
Ga0139299_1164989	Ga0139299_11649891	F025775	MKQFMTFQGFPMVVVTLMIIWAWISILSVLIGSFF*
Ga0139299_1171114	Ga0139299_11711141	F012756	MIGGAHHRRTVQEQGSEMRIRAAKIDELAPKSPRERSLSPRQLAALQREEEFRKALTRLKSDEDVLVVELDPAEKIPTMRAAVKKAIAAHKPGTNMAIRGRTIYLSTGSLPGGRGRKPKAA*
Ga0139299_1184097	Ga0139299_11840972	F061953	MSGPVWKLLKMPGTCDSCGENATELLSVGTVVDYAFRPDFRFCRSCYDRYEGRHDELHPKAVREQQLPPLISRPDSLEDVPE*
Ga0139299_1188266	Ga0139299_11882661	F002347	MSHPNKQQILQQIAAIPVMERGKLSAYSFNERAGVAGPYHKLQHWEEGKNHTHYVSGEELPAVEAALAGYAQYQQLTRQYADLVIGETRQNIAGLKKNHSRRRSSWPKKRKSNN*