3300010967: Microbial communities from the inside layer of the microbial mat covering an inactive hydrothermal chimney from the Kolumbo submarine volcano, Santorini, Greece - V16_c.in

Overview

Basic Information

• IMG/M Taxon OID: 3300010967
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121629 | Gp0157204 | Ga0139247
• Sample Name: Microbial communities from the inside layer of the microbial mat covering an inactive hydrothermal chimney from the Kolumbo submarine volcano, Santorini, Greece - V16_c.in
• Sequencing Status: Permanent Draft
• Sequencing Center: Hellenic Centre for Marine Research (HCMR)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 181380085
• Sequencing Scaffolds: 28
• Novel Protein Genes: 29
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Sedimenticola → Sedimenticola selenatireducens	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis	4
Not Available	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	3
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae → Thalassotalea → unclassified Thalassotalea → Thalassotalea sp. ND16A	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera → Ephemeroptera → Furcatergalia → Scapphodonta → Ephemeridae → Ephemera → Ephemera danica	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Inactive Hydrothermal Chimney Metagenome Study
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Chimney Microbial Mat → Inactive Hydrothermal Chimney Metagenome Study

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent chimney → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Surface (saline)

Location Information

• Location: Kolumbo submarine Volcano, Hellenic Volcanic Arc, Aegean Sea, Greece
• Coordinates
  • Lat. (^o): 36.52
  • Long. (^o): 25.48
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005815	Metagenome / Metatranscriptome	389	Y
F007003	Metagenome / Metatranscriptome	360	Y
F015265	Metagenome / Metatranscriptome	256	Y
F035771	Metagenome / Metatranscriptome	171	Y
F039145	Metagenome / Metatranscriptome	164	Y
F069741	Metagenome / Metatranscriptome	123	Y
F099328	Metagenome / Metatranscriptome	103	Y
F099485	Metagenome / Metatranscriptome	103	Y
F102416	Metagenome	101	N
F103291	Metagenome	101	Y
F105201	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0139247_1001001	All Organisms → cellular organisms → Bacteria	3179
Ga0139247_1005374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Sedimenticola → Sedimenticola selenatireducens	1971
Ga0139247_1008662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2996
Ga0139247_1009293	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis	2859
Ga0139247_1011943	Not Available	913
Ga0139247_1015838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1573
Ga0139247_1016480	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon	2587
Ga0139247_1016834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1859
Ga0139247_1019701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	725
Ga0139247_1029790	All Organisms → cellular organisms → Bacteria → Proteobacteria	1144
Ga0139247_1030282	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	891
Ga0139247_1032563	Not Available	1743
Ga0139247_1035590	All Organisms → cellular organisms → Archaea	945
Ga0139247_1040180	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis	1167
Ga0139247_1040206	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	1117
Ga0139247_1056199	Not Available	848
Ga0139247_1069842	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	1001
Ga0139247_1076535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	868
Ga0139247_1115890	All Organisms → cellular organisms → Bacteria → Proteobacteria	683
Ga0139247_1120388	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis	4055
Ga0139247_1120389	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	1604
Ga0139247_1120390	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	1545
Ga0139247_1120645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae → Thalassotalea → unclassified Thalassotalea → Thalassotalea sp. ND16A	518
Ga0139247_1121464	All Organisms → cellular organisms → Archaea	2188
Ga0139247_1122453	Not Available	544
Ga0139247_1122581	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	1193
Ga0139247_1122636	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis	1206
Ga0139247_1142602	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera → Ephemeroptera → Furcatergalia → Scapphodonta → Ephemeridae → Ephemera → Ephemera danica	645

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0139247_1001001	Ga0139247_10010015	F005815	NKTPRTKTSHVTEPAMTMNSTRLTTYWTIDDAATVIDFLDLLRDALWETYGDQITQMYREAYDDRFQDPNQCELEFDDDIPF*
Ga0139247_1005374	Ga0139247_10053741	F005815	TYWTIDDAATVIDFLDLLRDALWETYGDQITQMYREAYDDRFQDPNQCELEFDDDIPF*
Ga0139247_1008662	Ga0139247_10086623	F069741	MRLSLIATRTQGAKTLENIFFDVAQLSRLGRTEQAQRLEEAERQIDDIQRAAANDPASLTWIDQQRKYLVDMQQLIFEC*
Ga0139247_1009293	Ga0139247_10092935	F099485	MKQQIIRNWQHSPSKTQVARIPVKAVSKSLQQSQTFTHEDLMGLSWMLSEEGD*
Ga0139247_1011943	Ga0139247_10119432	F103291	VATLTIVSSGVVLXNXLGWLKSKEDYNTRSALASAIIAFVVGITIIGPQIEAIQDQMLSDLSELIIVASLIASIAGFDVLTKNVFKIANQKINLQNKPV*
Ga0139247_1015838	Ga0139247_10158382	F039145	MRIFLSSLLVSLTLLAGCSQEAINGPPELRPFIAELRENGVDGTLLLRAPFNKDMEYVAEYEISRYASTRVISLFKFKDAEKAEKNLQGAMQNDKLSGQARNGVFVIAATFYPPDEEAAGKIKELFLAHKFE*
Ga0139247_1016480	Ga0139247_10164805	F007003	MTIEWHTKNINIQNYYKIIKRTIILNGDDGTHLSGYNAWKKFKKEWTLHIIPVTEQKDFKRFYDHLIVETSDGIAWGVTGKNVIYMFINDNRNPFIIRQNIMPLSHELLHALYQFSVGTSHITRIYDSPEGRATTRGAAATVIVHDNWYGRKQTLRIWISWGLGWLPITISYIPIKQAKQLYRL*
Ga0139247_1016834	Ga0139247_10168342	F039145	MKSFLTTLFVSLTLLAGCSQEAVNGPVELSAFVKELKANDVDGTLFVRAPFNEDMQYVAEYTISRYASTRIISLFKFKDAEKAEENLQGALKNDKLSGQARNGTFVMAVTFYPPDEEAVEKIKALFLAHEFE*
Ga0139247_1019701	Ga0139247_10197012	F005815	TRLTTYWTIDDAATVIDFLDLLRDALWETYGDQITQMYREAYDDRFQDPNQCELEFDDDIPF*
Ga0139247_1021126	Ga0139247_10211261	F099328	VLRIIHAGTAEVCLVFFRRRIFLGEDLRAAIDFQARGALFK*
Ga0139247_1029790	Ga0139247_10297901	F005815	MNSTRLTTYWTIDDAATVIDFLDLLRDALWETYGDQITQMYREAYDDRFQDPNQCELEFDDDIPF*
Ga0139247_1030282	Ga0139247_10302822	F105201	MLFHDEELDEEELNKCFAKFDSKTIELIQKEYTND*
Ga0139247_1032563	Ga0139247_10325631	F105201	MLFHDEELDEEELNKCFAKFDSKTIELIQKEYTNDR*
Ga0139247_1035590	Ga0139247_10355902	F103291	MEIFGLSPVVATLTIVSSGVVLQNLLGWLKSKEDYNTRSALASAIIAFVVGITIIGPQIEAIQDQMLSDLSELTIVASLIASIAGFDVLTKNVFKIANQKINLQNKPV*
Ga0139247_1040180	Ga0139247_10401803	F015265	MYPDQITKNPTLIEKNAIVNLNNVGLPVFLNPIYDIIPIASPTKNPTKLRIFSNRNSNDD
Ga0139247_1040206	Ga0139247_10402062	F102416	MGEIATNGDIDMGENDWGMISKNPPMYESGVDNAVVEVTDTENKPHKITFKKGGVLNLGREGNTLYLAWDDADTV*
Ga0139247_1056199	Ga0139247_10561991	F103291	MEIFGLSPVISTIVIVFTGLILQNILGWLKSKKDYDIKSAIASAIIAFVVGITMIGPQIEAIQDQMLSELSQLTIFASLVATIAGFDTISKNAFKVANNKINPQKQTG*
Ga0139247_1069842	Ga0139247_10698422	F105201	MLFHDEELDEEELNKCFAKFDSKTIELIQQEYKND*
Ga0139247_1076535	Ga0139247_10765351	F005815	EPAMTMNSTRLTTYWTIDDAATVIDFLDLLRDALWETYGDQITQMYREAYDDRFQDPNQCELEFDDDIPF*
Ga0139247_1115890	Ga0139247_11158902	F005815	AMTMNSTRLTTYWTIDDAATVIDFLDLLRDALWETYGDQITQMYREAYDDRFQDPNQCELEFDDDIPF*
Ga0139247_1120388	Ga0139247_11203887	F105201	MLFHDEEXDEEELNKCFAKFDSKTIELIQKEYTND*
Ga0139247_1120389	Ga0139247_11203892	F105201	MLFHDEELDEEELNKCFAKFDSKTIELIQKEYTTDR*
Ga0139247_1120390	Ga0139247_11203903	F105201	MLVHDEELDEEELNKYFAKFDSKTIELIQKEYTNDR*
Ga0139247_1120645	Ga0139247_11206452	F005815	MTMNSTRLTTYWTIDDAATVIDFLDLLRDALWETYGDQITQMYREAYDDRFQDPNQCELEFDDDIPF*
Ga0139247_1121464	Ga0139247_11214645	F105201	MLFHDEDLDEEELNKCFEKFDSKTIELIQKEYTND*
Ga0139247_1122453	Ga0139247_11224532	F015265	LSMLSDFVTRSSAMYPDQITKNPTLIEKNAIVNLNNVGLPVFLNPIYDIIPIASPTKNPTKLRIFSNRNSNDD*
Ga0139247_1122581	Ga0139247_11225812	F105201	MLFHDEELDEEELXKCFAKFDSKTIELIQKEYTND*
Ga0139247_1122636	Ga0139247_11226364	F015265	MYPDQITKNPTLIEKNAIVNLNNVGLPVFLNPIYDIIPIASPIKNXAKLRIFSNRNSNDD
Ga0139247_1142602	Ga0139247_11426022	F035771	GNVEKSRQQRSRPLAVLAYEEYAPRVKRAAALLDELF*