NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300010967

3300010967: Microbial communities from the inside layer of the microbial mat covering an inactive hydrothermal chimney from the Kolumbo submarine volcano, Santorini, Greece - V16_c.in



Overview

Basic Information
IMG/M Taxon OID3300010967 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0121629 | Gp0157204 | Ga0139247
Sample NameMicrobial communities from the inside layer of the microbial mat covering an inactive hydrothermal chimney from the Kolumbo submarine volcano, Santorini, Greece - V16_c.in
Sequencing StatusPermanent Draft
Sequencing CenterHellenic Centre for Marine Research (HCMR)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size181380085
Sequencing Scaffolds28
Novel Protein Genes29
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Sedimenticola → Sedimenticola selenatireducens1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria4
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis4
Not Available4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales3
All Organisms → cellular organisms → Archaea2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae → Thalassotalea → unclassified Thalassotalea → Thalassotalea sp. ND16A1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera → Ephemeroptera → Furcatergalia → Scapphodonta → Ephemeridae → Ephemera → Ephemera danica1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameInactive Hydrothermal Chimney Metagenome Study
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Chimney Microbial Mat → Inactive Hydrothermal Chimney Metagenome Study

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biomemarine hydrothermal vent chimneymicrobial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Surface (saline)

Location Information
LocationKolumbo submarine Volcano, Hellenic Volcanic Arc, Aegean Sea, Greece
CoordinatesLat. (o)36.52Long. (o)25.48Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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