3300010873: Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 3A (Eukaryote Community Metatranscriptome) (version 6)

Overview

Basic Information

• IMG/M Taxon OID: 3300010873
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0068071 | Gp0125764 | Ga0136898
• Sample Name: Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 3A (Eukaryote Community Metatranscriptome) (version 6)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 566397676
• Sequencing Scaffolds: 11
• Novel Protein Genes: 14
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Saccharomycetaceae → Kazachstania	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → needleleaf forest → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: New Mexico, USA
• Coordinates
  • Lat. (^o): 35.8911
  • Long. (^o): -106.2978
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000025	Metagenome / Metatranscriptome	5578	Y
F000074	Metagenome / Metatranscriptome	2624	Y
F000360	Metagenome / Metatranscriptome	1232	Y
F005871	Metagenome / Metatranscriptome	387	Y
F006333	Metagenome / Metatranscriptome	375	N
F009448	Metagenome / Metatranscriptome	317	Y
F011471	Metagenome / Metatranscriptome	290	N
F020480	Metagenome / Metatranscriptome	223	N
F028991	Metagenome / Metatranscriptome	189	Y
F084971	Metagenome / Metatranscriptome	111	Y
F086413	Metagenome / Metatranscriptome	110	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0136898_10104741	Not Available	566
Ga0136898_10107536	Not Available	617
Ga0136898_10134041	Not Available	543
Ga0136898_10352083	Not Available	508
Ga0136898_10563341	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Saccharomycetaceae → Kazachstania	1343
Ga0136898_10667121	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	764
Ga0136898_10685284	Not Available	618
Ga0136898_10800371	Not Available	605
Ga0136898_10908232	Not Available	597
Ga0136898_10944035	Not Available	547
Ga0136898_11049269	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	773

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0136898_10104741	Ga0136898_101047411	F011471	LIALLVATVLSQVPPKPVWPAAASCSLLVKGWDRPDDNHHFRWFYDQANKERFDGPVRFAGEFYWSETIVDTLVHREMSVIHQEGLVMCFNRASNITIPQPNFNNVQYVGKSDIDFQIVDQWAQSANGKVILNIWARATDQEIVRVDYNDPRRGHTVSYNFYEFDAGAQDPSLWTVPSEILAICTPVF
Ga0136898_10107536	Ga0136898_101075361	F084971	SVLILTLCVLNLLVFSSCLQPQQQTTKNLEQRSCDPAVIGRWVGVVPSLNYLVIHADATLDGRLLGLVIHGFVTTDVSLTPLWLDLHLDLGVVVPCIYSIAPVNGVNVLSLALDLNLVNILAGSCVRPVAFLATNTLKLTANIVL*
Ga0136898_10134041	Ga0136898_101340411	F011471	LIALLVASAFSQTPPKPVWPAAGSTSLLVRGWDRPDDTHFFRWYYDQKANKERFDGPVRYAGEFYWAETIVDTLVHREMSIIHQEGLVMCFNRASNITIPQPNFDMVTYVGKSQIDFVVVDQWAQSSGGRVILNIWAKNTNQELVRVDYNDPRRGHTVSYNFYEFDAGAQDPSLWTVPSE
Ga0136898_10352083	Ga0136898_103520831	F006333	LDKLLTEIKDIEFFYRKKSFPGFEDHGKATFRITGKGAKLVFTYNLLQRAEDKVPRISEGKASFDISEMSIDFDKSTLRHPTMVPLLTQLWKTQIRHQIEKEVEGNLTGFIHKLGDIMTTSMEQINRPFLTGLDIARNAVKSSQLAQVYEKRREKLE*
Ga0136898_10563341	Ga0136898_105633412	F086413	MNLYERQRKRKEDPNIELLLTQFWDRLPGYNHNVSHPLIFNDFVYVSRIAIGLFEMKNIELSRKFGNLGYSLLSKILQTLDVFFREQRILLVQTVHESIFYWVQLLEKFKSCTLCWYGKCILETIAVPDEGFRVPVFVEIQQLAFSIYASSGENEKLHYLIQIIDLLPHFPHPDPLMLCRTAFLIIGSTPSSPISSYKGVYLHQILRFMQLIYAPIDSCTFPEAKALYILLRLILYAGNPNDTTAFPYDISHVFTLLENPTIESFGFWVTGYALCFSLAIGRLDYAQRNHLCHWWEYYNLWYPFFKYDPRVHDNQEIITTGGYPEEKYFT*
Ga0136898_10667121	Ga0136898_106671211	F000360	SSDLSFVDTEGKVQVDFDMLSKLQSVLLPILAEYFKYIPLPRIERNDSKREFWLDNITLCGYDIIPENIHFHLESESDLSMKSLESRGHTRLVIRLDKFRTELKNMTFFYKKKTFPELMDNGVVSFRIGGDGARLTLVFNVEKFHGDDQPHLTEGYADFHIRKMDIDFDKETLTHDVLVPMITNMSKMDIQNEIEKVVEKSLTNVIQKLGDQLTQTLGQVNRPFLSGLDTAKETLKKSEMAQVYANRREKLME*
Ga0136898_10685284	Ga0136898_106852841	F028991	THSLSWDVIESIPAVTVLGANHTVRLRRITDVNGTFIEWTTDFSKDAGHDVTQDQRFKQKDNFNAIAAALESKEEVKRAPSKKLIGGVAGVYNPAKAREGVIAIWEELQSLQKAAAEHKTLTVPSLTLLTTRYKKLPITWQVDWRVADLSADVAQKVADDVREKLNDAKARLGDNGLPLPRLFNAH*
Ga0136898_10695907	Ga0136898_106959071	F005871	EIPKGKLGVLAQVPFLIQYDNGKGTPARISPADLEAEVTSPDGVKLQNKIIGAANSYRVTFTPHVKGVYAVDVTLRNKWQRRLNATIYGATSLRSYLEGINRVPKGVYHLRLITVDEDNNALGAGGDSKFEFLLNAPEGSYSDFKIKDNKDGTYTLEVCLTHSATEYEFSAL
Ga0136898_10737180	Ga0136898_107371801	F000074	PMQRFLLLLSVLFYLCLGHGTVINPAMRANPTVNGGWCQWCQGNQVACSDKVFCAPPSPCYGAPGPLTAATKYFSGMTNIKDSDGNYWIEQTNGTDVEPVWCPSQTIDYSFFNNADHNGIYQFELQPGKPGSETEAGFKPFTPWKSINNDASTTYYEIDGVTPFKAGVCANGKPWSAETAHCRDNALWKSNFTLPANLAPGNYIFRFIWYGGMTLDLKRVSGPEPSLFVNCKDIVIGTPQQCNK*
Ga0136898_10800371	Ga0136898_108003711	F020480	VALFQPWYTEMVEGSATGITSCRWQRDRYWEMDTLECFDCTLCTPGTTWWQTDCEKDHCIHQASVYNATRVCAGISVCLLCIAFITFCGNACFSVPSWVATAFTGTTLLLSLCIIIAFAVAHPISIRSDREDTGDTSCTIGPCSSFIGDSNFTSLFKLLQGHWRWGASVGYFLYLTGTILLFVTLLVMLSTRYWKRASYPK
Ga0136898_10878642	Ga0136898_108786421	F000025	GLLVLSTLLFAFVAAQVKPTWPAAGSTSIFVHGWEQREDRQFLRYFFDQKAGKERIDGPRIFGGEFFWTTTILNTLTKREYFIVHQGSLIQCFERATNISVPKPNFERARYIGKAEIETNVVDHWIERTPEGRDHISIFNRVDNGQIVRLDFEDGRRPHATTFEFHEWNAGAQDPNLFTVPSSILAICNSA*
Ga0136898_10908232	Ga0136898_109082321	F000360	GYDIIPENIHFHLESESDLSMRSLESRGHTRLVISLDKFRTELKNMKFFYKKKTFPELMDNGVVSFRIGGNGARLVLVFNVEKFYGAAQPHLTEGYADFHIRQMDIDFDKDTLTHDVLVPMITNLSKMDIQNEIEKVVEKSLTDVIQKLGDQLTQTLSQVNRPFLSGLETAKASLKKSEMAQVYANRREKLME*
Ga0136898_10944035	Ga0136898_109440351	F009448	MTNIKDTDGNFWIEQTNGTDVEPVWCPSQTIDYSFFNNADHNGIYQFELQPGKPGSETEAGFKPFTSWKSINNDASTTYYKIDGVTPFKVGDCTNGDPWTPETAHCRDNALWKSNFTLPANLAPGPYIFRFIWYGGMTLDLKRVSGPEPSLFVN
Ga0136898_11049269	Ga0136898_110492691	F000360	QAGIISSDLSYVDTAGKVQVDFDMLSKLQSVLLPVLAEYFKYIPLPRIERFDSKREFWLDNITLCGYDIIPENIHFHLESESDLSMKNLESRGHTRLVIRLDKFRTELKNMKFFYKKKTFPELMDDGVVSFRIGGDGARLILVFNVVKHPEDAQPHLTEGYADFHIRQMDIDFDKDTLTHDVLVPMITNMSKMDIQREIEKVVEKSLTNVIQKLGDQLTQTLGQVNRPFLSSLETAKETLKKSEMAQVYANRREKLM