3300010310: Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2_B SIP RNA (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300010310
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118679 | Gp0138712 | Ga0116235
• Sample Name: Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2_B SIP RNA (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 283792449
• Sequencing Scaffolds: 42
• Novel Protein Genes: 43
• Associated Families: 38

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	3
Not Available	14
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin474	1
All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.Bin155	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin060	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanoculleus → Methanoculleus bourgensis	1
All Organisms → cellular organisms → Archaea → Euryarchaeota	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin139	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin028	1
All Organisms → cellular organisms → Bacteria → Spirochaetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium ADurb.Bin101	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Anaerobic Biogas Reactor Microbial Communites From Washington, Usa
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: USA: Washington
• Coordinates
  • Lat. (^o): 47.6525
  • Long. (^o): -122.3049
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003987	Metagenome / Metatranscriptome	458	Y
F005744	Metagenome / Metatranscriptome	391	Y
F009606	Metagenome / Metatranscriptome	315	Y
F012026	Metagenome / Metatranscriptome	284	Y
F018746	Metagenome / Metatranscriptome	233	Y
F029455	Metagenome / Metatranscriptome	188	Y
F030486	Metagenome / Metatranscriptome	185	Y
F034940	Metagenome / Metatranscriptome	173	Y
F035785	Metagenome / Metatranscriptome	171	Y
F036251	Metagenome / Metatranscriptome	170	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0116235_1022819	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	816
Ga0116235_1034576	All Organisms → cellular organisms → Bacteria	552
Ga0116235_1034667	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	2134
Ga0116235_1043865	All Organisms → cellular organisms → Bacteria	718
Ga0116235_1049541	Not Available	519
Ga0116235_1050874	Not Available	558
Ga0116235_1055577	All Organisms → cellular organisms → Bacteria	920
Ga0116235_1058398	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin474	6308
Ga0116235_1070761	All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.Bin155	720
Ga0116235_1081006	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin060	712

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0116235_1022819	Ga0116235_10228192	F065813	MTPLMKFFGWLDVIIATPFAIYLGYKIIKWIIGKLKKQPQEGEIDTPDVES*
Ga0116235_1034576	Ga0116235_10345761	F036594	YDKLEEMRERNIETRGLPPTMRFEHRLLNKQKVQNVYGFGKVEDLFRGGYAVVKEKQVESWKGSLFNFTAEELVVLGSKQLEQEMRRFKERSPSGWFSKFLKAYGAYYLASHAGKEVIVEALQNFEADRMKIWRAVQVFEEAERELMVLKQEEGSNKTLGVLYEELRRKVCLN*
Ga0116235_1034667	Ga0116235_10346672	F064746	AKISLIIFLGICAVLVCGCLDTAAEQKSVMIDGYTFTASLNDKWDTSYGEVSKYNPADLEDQFGIPGGAYDWTGFEDYGAFNYRSGEPSGSITKGGWANIFVLKPDEDLSDSSSIDILKHATYMIINPKDHRNAVIGGDLKEKEIEYNGRQAYFIEVEGELITPENYHTFINDNSLGAIAFFLDDDTVALIDVETTNDFGMSAWDVINSITVN*
Ga0116235_1043865	Ga0116235_10438651	F012026	VEDRFNPKIISEINGYKQAVEELSRELDRLEVEKGALLEAEEAARKEYVAALNAYDELFGRFPNAEKEAAELLKRYAKHVEAARRAREILMAKMTALAAVSGAYVPIPPQIGHAWREYAKEYAFEIEHRGGD*
Ga0116235_1049541	Ga0116235_10495411	F103320	KFYPSLKVKNPAGDTITVNPVAAAFNERFRENESYPAFILKDPKSGRIDTLTWDVLDWDDDSVALYLGSGTGTTTDIWMAPTDSYCAEKTVRIDFLTGWTWYFPRLKIAAAPGGDGSAAGSVNLQVVAKVQPLGELEPFQRIATPVLAAEPDPED*
Ga0116235_1050874	Ga0116235_10508741	F051952	PDHFTTTALSENSWRILGKVTENEVTLVRYFLSKIVYTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGSEVFTFRAVFTSLEDVVSANPQDRLIRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLKVLTRFPKKFKPKAFVGKGYGDHGTAKDMAYDGSPSWQEVAMADTNLGTSDTSKT
Ga0116235_1055577	Ga0116235_10555771	F030486	VRRYVALAQSRGGACFCTRGAVQDYAVITLFSRWQKP*
Ga0116235_1058398	Ga0116235_10583981	F035785	EAENALKMTEQEMLDVVFEASENSVVELNVVDPDSQAGDNDGIYLEIVKLDDYESVVRDRWPNQDGDRHIVSTDDIYSIYRALVDQVEEVA*
Ga0116235_1070761	Ga0116235_10707611	F082738	RRWICRDAAGTRMKINAKGRRCAPTVTARRLEQFPGKGTAYIRDGTPNPRLTRPEDHGWTEIKDAEIAKFARLGYDLWYKTASMGGAHRVYRSLKKAGK*
Ga0116235_1081006	Ga0116235_10810061	F083876	VIQKEGSKWIVKDLLVRWNEQTEERDMDGETVTEYVYDAHRFDFELPPEVQPGLEAVEFYLEAAQAAVLQLAQDLAAQEAGFQ*
Ga0116235_1085325	Ga0116235_10853252	F085858	FAFALNDSRGKMKDRKMKDFKEVIKSKIIPTTFVFHCSLCGFEISDYDRHFGLIKMNRHVMAEHEKEVKSLDMEDLYSRKPTITLESF*
Ga0116235_1089457	Ga0116235_10894572	F089495	MGRPYLRKKHVTISLFDGTATTPFTETITGYADVPELPEPVIDAPAEGYAPQGVFNSIEEGDDTINLPEFSITVDINDGDVDSNKYALNEWFNNHKDSTGSTTLKSTNDGSAYLKKSIDGTTVSANLATDWFTIGMKVLFNNSGSAKAFGKEYKYVRPISATFSTSNKAQVTLRMQIVGAPTDITS*
Ga0116235_1130235	Ga0116235_11302352	F040648	NHEEALLEIEPMLDTAREGVTALETATTLIHIPTREMAKIQTAITKMREAAVYVENRARNLPVRSNATTKSALKEALKGASQEQIERAYTILSGQDAAYEVPAEGEEE*
Ga0116235_1136128	Ga0116235_11361281	F082738	RRWICRDAAGTIMKTNAKGRRCAPTVTERRLEQFPGKGTAYIRENTPNPRLTRPEEYGWTEISDAEIAKFARLGYDLWYKTASMGGAHRVYRSLKKAGQK*
Ga0116235_1151943	Ga0116235_11519432	F085739	MSGILSGGPTSCANCVQTDCSHSTDLPDLALICEAFVNATFPPDVQDDIKNGNRCHICGAPAIIGGGGRVTCGNCLLAQAAAKARVGDKAIREWQGTVAVAPVPAGGCGADPDDVEDEEEAL*
Ga0116235_1160452	Ga0116235_11604521	F056642	TMYKLINSYAQSENQIKQGKYVPPEITVLEITLEKGFATSFASGTEDWGSLTW*
Ga0116235_1186171	Ga0116235_11861711	F071272	YKAAVDQLADSMAAGAWQDGPAPKDGSWILGLFHGLPYVVGYYSWEVGGEMLPDGTGSPPDGHESGWCLAGDNIQVMDQDETEKWARIIHPDRHMPASWDGPGDLG*
Ga0116235_1190052	Ga0116235_11900521	F098758	RLFGIIILVAILILVSGCSKPSEQPPPVVKTDLCENVQCPDICKGEDLWSQKCVDGECVDFVRIEPCSEKCGCITDLCQRIKCNDQCRGEDLWTYKCINGICSPESVKEKCSVECGCAPKFFYKLIPEARYKMPEVGIIANVYSIRSDQVIRAVVTCRSSLCSAPPTVYYTKFEDQFVRSEDETVEYFGTAWKNFKEMEGNELTVDEGGTYMIGVSTQ
Ga0116235_1193339	Ga0116235_11933391	F064746	GETIMAKISLIIFLGICAVLVCGCLDTAAEQKSVMIDGYTFTASLNDKWVNSSGDVSKYKPANLEDIQFGIPDGAYDWSGAENYNAFLYRSGEPSGSMTKYGWANIFVLKPDDDLSDSSSIDISKHAAYMIINPKDHRNAVIGGDLTEKEIEYNGRQAYYIEVEGELITLENYHTFINDNSLGAVAFFLDDNTVALIDAFTTNDFGMSAWDVIDSITV
Ga0116235_1194677	Ga0116235_11946771	F029455	MPDRIIDLDLWDEGAAERLPAITVTQAGLRLEGSTAEFDRLLLILGGWLKS*
Ga0116235_1204045	Ga0116235_12040453	F065813	MIPLMKFFGWFDIIVVTPFVLYFGYKGVKWIIGKLKNKQPQEGEIETPDVES*
Ga0116235_1242234	Ga0116235_12422341	F051949	MFAHAGTARLDIFTDSLLLEVGEDLFLARLSRLSPLMQGRTAYCPLSRRYQGTAGHYCDVEQGIGLRRSKPGAALIFVDQGTIYSIPVVELREVLHGVRSECGISRVLTTEARMMEVEA*
Ga0116235_1249440	Ga0116235_12494401	F036251	MSAKERQTVLFGDTGVTTPIDTTERVSLTDGTVFVAQRIEVRPSNKYGEYVVFDGEDLDGREFHAYSTSGVVLQQAKALLEKYGGEKGALTHDVLCAVKSVVSESTGRRFFT
Ga0116235_1250732	Ga0116235_12507321	F072475	MSESFASRFMTPEEKQAMVARDPQSAQALHNGPRTGFAHNCYAGGLGMFFQKTIKNTILEKFLDQAWQGFLKYRCAGSKAAYREAKKNPDAVFQYDDPLLACLNRVMKESIAEHHTDNDAARKQQLMRQATDITLTLLNEDIYYRARCKEHLRDILAAVAEHPEYLDLSPEEEQNIRRWNGCSP*
Ga0116235_1295004	Ga0116235_12950043	F076128	MLVEIIVLLFFLVASLYLAYQFRSCGHQMGILQGSNASLSADLQETRSCLYNTREENLKLMDELEATRADLALTRGELEKTRAALNSCTDAINGGSCMCLP*
Ga0116235_1306928	Ga0116235_13069283	F104682	MREIGIDRPRFDVKVSTEVFTLFFIPNLARKKYIDFWHRVEAMIEALKIKNKKERKQAVDSLSSDDESDLLKEIIEVTLEANGIAYNEIWWEEHTDAEMQLEFVRAVIEGSDSGKKKVLQVLKA*
Ga0116235_1307109	Ga0116235_13071092	F095525	MKPVTAIWLVALGLVVGIVIGQCLQYNKKRIENFTNKLKKK*
Ga0116235_1316152	Ga0116235_13161522	F036251	MSAKERQTVLFSDTGVTTPIDTTERVSLTDGTVFVAQRIELRPSNKYGEYVVFDGEDLDGKAFHAYSTSSVVLQQAKALLEKYGGEKGALTHDVLCAVKSVVSESTGRRFFTLV*
Ga0116235_1327126	Ga0116235_13271263	F018746	MRPTSEALNEFEAAVIAALEQTPDRPILAADLVRTFSTRVGRTSCISRLERMERRGLVRTSRFAGRILIHPPVEE*
Ga0116235_1338288	Ga0116235_13382884	F005744	MDEMFEIIKAGAPDGPPEQALYRIQQTYPDGSGGRLNVDWTGLHRLHDLIHDRIAMEGCVCETCDTRGCHRPATWEIECREAGLRSHLIYSCDEHCPDPAILSPQDEIRRLVEKE*
Ga0116235_1344037	Ga0116235_13440371	F087252	MISTAAVSTAQAANGSADKDARLLDKLVKLWTVHNKRSLEVRLETGELLNGRLGEPIIRQSRGRSVLKQAAATLHIAESELNRMRWYAYLSKDGQSFWGETPSGMRSWTKFKIILPGLIAARKGAARKGSEKRQGFSRDRKARAVADGALRLIRSTTSRLCTGNFTVDGAKREELIGGLREFVDAVSSLTGIRFHVEMDEDTTGGHGLNK
Ga0116235_1351671	Ga0116235_13516713	F037999	PRVGKSIISSEIRQKHAVSVVSTDTLGAVLENVLSPEAAPDLFVFGKFNEMPMTERVKLITQNPTELIDYVRRESHVVWKAIEAFVRRENDEGREALIEGVAVLPELMSRLEDIPHRVVFIGNQGENHKENIKKSAQENEHDWMRGVSDQYIDAFAVFVRQMSAYIEQEAKQHGFKYIEMDKELLGDVTEEVVKSFGLSMR*
Ga0116235_1360306	Ga0116235_13603063	F003987	VIPSLPCGTFSDGDTPAGAFYVAAFEDGDQTHHVGEYRIETVLRALRALQACGYDDVEIGSIERGGKTHLLLIGLDGEARFGDRQTGCVAVAPVGVE*
Ga0116235_1376209	Ga0116235_13762091	F103505	AHPKGGYMDPVLLREYEAKLAYWLSQGYRLLADDIDGELRITAHFVSRDGAVGSERAQEYWPMTPGIVQLLTDNGIEISRALAGPRPWAGPHPEDL*
Ga0116235_1386164	Ga0116235_13861642	F034940	MGNDCWYYRAQYAGMTKVCMRQSIVECGRIRRFGLCPIPPDSESWRRCGFAIGQREIPAGNEG*
Ga0116235_1398125	Ga0116235_13981251	F009606	RGANVVRTKAKPKVNPVTGANFEYVSEPRIGDSFAVVMGGPSGVQSFTFHHPIGLTDVDGEDWVCTPTGDIPSLLARREDPDEADRKAKRDRYRLSLVVAAGLLEKANDEGLLVYPDTEISRQDALAAARTAAKDAVKKEAGKPGPDLYIRFLDTNIQEKEVAVRNKLADKETIRKAEQKFPPSGYRTRGGPLADRDQKSVEYLTGLTRSQAQDAVTKRIFGLDD
Ga0116235_1399129	Ga0116235_13991291	F103320	MAATDNIHIAGVKAIYVTDVEDTPMAVNAFYPSLKVKNPAGDTITVNPVAAAFNERFRENESYPAFILKDPKSGRIDTLTWDVLDWDDDSVALYLGSGTNTTTDTWMAPTDSYVAEKTVRIDFLTGWTWYFPRLKIAAAPGGDGSAAGSINLQVVAKVQPLGELEPFQRI
Ga0116235_1402251	Ga0116235_14022512	F076220	MNPIPEAARSGLEKFLKEDLAGAVVTAASPYVDEDGRIYFDEIALRLGDGREVVVAAEMRSKWPAIVLEINPGDGWRDMTVEEDYSEELEELTAEPWH
Ga0116235_1415873	Ga0116235_14158733	F054898	MKAKLKIEELPAGYRCRVCGRRFRAEEAAFVHQSYDCSQNVRTMVEER*
Ga0116235_1420714	Ga0116235_14207142	F042353	MTSNTLPATLTGDACRRLERIIRDDLEHATVSSAMVLVEEGGRIVINELVLRLDDGRMVTLMPLGVPAETAVDLRLDIYDDHLPGGHGWREATVAEDYAEELADLTQVWCPEPDTLEEARL*
Ga0116235_1421036	Ga0116235_14210363	F088942	MEWFRRDNTDGYDENTLKEMNDEMKKLYDSLSDEEKGNESYIDYLKEQILSLH*
Ga0116235_1434490	Ga0116235_14344902	F094051	MGNTGVLGKVQIEGNWTQKRLILPVIQAALERTSLASPAIGPTMTYAKLKGTIPLLGPVPVQSQLDEFEHAVGGGGKPSGFDIEVLKDRVVLYVSDEAEIESDVGNPMSLQQQAAAGALAANLNKLIAERLNTTPQVYGTGGDLGNWTSVKPTLAVGKMAAAMGVHRPTALVMGTLAGAYYVDAVGDKVAIANLAEWRGATSIHPTLNIPVFISTDVDKLDDTSGNRYVFGVCNTTPGVVTVLSKIKARQYDDPKLGAQVYQYDIWRSPFSNIQQTSGNLNLGVMRGIMKES*
Ga0116235_1441242	Ga0116235_14412422	F091989	MTLSAYARDVINRARVNGYASDASKAGDALIRPFGEHDKQRASLRALQESTRALCWIDATGGAVPFDEAEFNQVQKEIAALQAKIDHNDDILDALDDKVAELGLTEFSISKLKGQIEKLRSQINQIRAEENDSLRSKWESVVSLGGNRATYDKLPEVIDARAKAAEKIAPIESEIKALNAQIRSLE