3300010288: Hot spring microbial communities from South Africa to study Microbial Dark Matter (Phase II) - Tshipise hot spring metaG

Overview

Basic Information

• IMG/M Taxon OID: 3300010288
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111485 | Gp0138775 | Ga0116210
• Sample Name: Hot spring microbial communities from South Africa to study Microbial Dark Matter (Phase II) - Tshipise hot spring metaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 309030554
• Sequencing Scaffolds: 23
• Novel Protein Genes: 24
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → unclassified Mycoplasmatota → Mycoplasmatota bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Candidatus Nephrothrix → unclassified Candidatus Nephrothrix → Candidatus Nephrothrix sp. EaCA	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: South Africa: Tshipise
• Coordinates
  • Lat. (^o): -22.6092
  • Long. (^o): 30.1749
  • Alt. (m): N/A
  • Depth (m): 2 to 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000353	Metagenome / Metatranscriptome	1246	Y
F001564	Metagenome / Metatranscriptome	670	Y
F008501	Metagenome	332	Y
F010100	Metagenome	308	Y
F012675	Metagenome / Metatranscriptome	278	Y
F013791	Metagenome / Metatranscriptome	268	Y
F020112	Metagenome	226	Y
F028996	Metagenome	189	Y
F038253	Metagenome / Metatranscriptome	166	N
F041729	Metagenome	159	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0116210_1001737	Not Available	15131
Ga0116210_1002134	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12700
Ga0116210_1004281	Not Available	7020
Ga0116210_1005418	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	5737
Ga0116210_1005658	Not Available	5523
Ga0116210_1005970	All Organisms → cellular organisms → Bacteria	5252
Ga0116210_1006633	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4784
Ga0116210_1010548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → unclassified Mycoplasmatota → Mycoplasmatota bacterium	3137
Ga0116210_1011077	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3001
Ga0116210_1018530	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1930

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0116210_1001737	Ga0116210_10017373	F041729	MSAKTFEGSVSIVKNTKGEIALKRDPEGRFSAANAAECYAKMMELCKRLKSPVNKYSLFIADGGTEPVMLANRFGNPYIALLPKRGDGNVKRSAVTKLA*
Ga0116210_1002134	Ga0116210_100213412	F049663	MRAKLLIEKALKQKAFVGALMRSSLENREYASYRLSEYVKAYSNQDAYEKSSLERMFSALPGTATTRGFPNYGVVLQLASLLANVSSFSGFLTIEKTIEQPNFVLHFLDLIGTNVRDNGRTEPVFPTVGPTKYDNSAYGLQTYTTTPTSTPLVINNNTFKIAANIDVTVPIPPIMPHTIKIVVKAYNSSGNLLATEVFTDNGNKMLVSLGVSSGLIGIDTSVPVPHIVTYGNPSIPPQTTIGSGWDFIINNIQINGPVGTNLVAELSFAFNYTEPIYYPGQEQDERFTLNLTRVVTVNTKPAKLTIELNKQELAAISKSMSQDLQPVIVQRVGDIYNKMVNRYIVRKYMQRFIDSNNFSGVVTIDIGSPFGGPANPGSPLPPYSSYDQYIPILERTRGGFEKVRQELHRKSYIANKPTALLVSPKLAYFLSKSIMVEQSLWVEEKVTYINDLFGYYIGIPVLVHTELETLDTAFETWARTQNLIPSPGIYATAAVGFAVAVLPDNNLAPMVRATFLPPTNTPTVANFNNPLQEAFSMFYQEDVDVVAPELVVPFALVNMPVS*
Ga0116210_1002134	Ga0116210_10021349	F062520	MANRRFVAVVAAVPNLKVDELKRLPTFVDERNIPDMGGNLKTWRWTNNPEVYEIYYNEAGILRYHYFTDRISNDSIKNLIDFVRNNKIDAQVPNNAFINASYVFSTTVEQSPELYSAIIAPAMFLEADNVGLARGMTSYGFKIANQTYDLVLKAMWESVVIHVELSVVYNTQSVVGLDTVLPHMLEVLSNEHRILSSRIFTADKAVAR*
Ga0116210_1004281	Ga0116210_10042814	F000353	MMTQAQTSGTELKVRIEKALQERSLKKLITKLAKELDGEHSFLPQAVEAQIRNEIASAGVAVSQYGGWYRCIAAYLLLPKLDDLLQVKEMGDSRNVAPIVQKLRKEALRESLSAFGVEMPTRYARTSSSTGQRKVRIPREQKQQLVESFLDALPTFEGLREVLDTLPSNTNLTVKQIRSLVKRYFSIANRLQSVAADE*
Ga0116210_1005418	Ga0116210_10054186	F103321	MKDALTDLLHKAVSLSNAKSNLYGEIGDSDVKVLIYSLPTKLIMNTAKLFGDSIRGDIDEGTIIDIITYSLYIHSVVNGNDYRNIESILNDSYKIIQQRHYDYNSADLIYDRLSMSDITSMIHIKAIRIKNLLNNIDKSNDNGVIESIKSRIIDSIYDLMIYIAMAFLKLYRV*
Ga0116210_1005658	Ga0116210_10056583	F088948	MPGYLFYYHRQTPSIQLPNLHEVLQDSKTINTISYERVTDFGIVPFLFVEGIPSNPYYDITNKIKQHLKTQNIEPEKIKVVHYQKDEIHQYGQSRIPWHYIGTKITKQKISIEDINKKLDKIKLDKSEVLFLESTRVGKELLGFLAERDVDAVEMLKFFLDRASQKLKVEVPIKDYDLLYDMLYDVYEYYIWYGVRSEIGNFHTLIENFYRYYLLNVLPKAVGLYWLDTYYDPSALVTQIKL*
Ga0116210_1005970	Ga0116210_10059703	F049080	VTLEVEDPMAKDLRAKLTLSKEEIVHLYHGGILSVKIKGKEGDANLEISCGEVPEKKGTRIRFKTIEAE*
Ga0116210_1006633	Ga0116210_10066331	F000353	QERSLKKLITKLAKELDGEHSFLPHDVEAQIREAIVSAGVAVSQHGGWYRCIAAYLLLPKLDDLRQVKSTAGDKNVTPIVQRLRNEALRESLSAFGLEVPARYARTPSSTGQPRVRIPREQKQQVVENFLDALPTFEALKEVMDTLPSNTNLTVKQIRSLVKRYFSIANRLQTKTYQEETTQE*
Ga0116210_1010548	Ga0116210_10105483	F008501	MLERMYKKSAVDLTDLALGVVVLGIVVSVGVTILTNIRDTNQPNSPAYNITNMAANGLAEYGNWFKIIVIIGVAAVILALIFMAFGKGSNTVGSTY*
Ga0116210_1011077	Ga0116210_10110772	F012675	MLGMTAIVSAGVAVSQHGGWYRCIAAYLLLPKLDDLLEVKKMGDAQNVVSVVQKLRNEALRESLGAFGIEVPARYVRTSSSTGRSRVRIPREQKQQLVENFLDALPTFEGLKEVLDSLPSNTNLTVKQIRSLVNRYLSIANRLQTQATQEEDTQE*
Ga0116210_1018530	Ga0116210_10185301	F010100	LELQIYLEPQVEQLVAEQPLQEELAVLLNLPPLEKAKADIMRWTFLLLHLGQRIFSEGLKTSFSKSLSHWLQ*
Ga0116210_1028123	Ga0116210_10281232	F051242	MKEDDPSKANDEKSLKLTVCKPEDQAFQRLHLCEYLSELYESAEEENKSSVEKKKA*
Ga0116210_1030551	Ga0116210_10305512	F056992	MEVRSSEELRPFVDIDRAEVVDERARGGEVIIIPLVNPFLPRPALAAVADNLAWFMERVTGRGYQKAEEVYDVGFVVREPGHQAYGLKVNAESGLVVISRVSILEDETVFRRYVDYLHTGIFF*
Ga0116210_1036469	Ga0116210_10364691	F095698	MRIFLESEEFWFEDFKVDNLMEAISKLKALYRDCRECFKEDRIVRKIGIIIE*
Ga0116210_1042717	Ga0116210_10427171	F013791	LIPDRTSPAKPQKLVNLPAGCCIGAREITHPCKVESRSGTNMKVFISYGDAADQVTALRLQALGAANGLTVYVPPAYTRQGAQAFLDPVTSQKLSDAEVVLGFVGNTLSEACRQELNTGLALRKNMIVMAYPHIAEQLQPYLSRHLVVVDPANPDQSEIGIVEHLRQIEAQQNAKKALLALGTLVLGLLILAPAEQS*
Ga0116210_1047856	Ga0116210_10478562	F001564	LIHWALRRDEPCDPGLCPDAADDGGRCGHCPLDTLDVAQSSEAGLLLRRALDLRAALKLGIRVSLDEIRADEFRALVVLEEERDALDREQMNAHGR*
Ga0116210_1050315	Ga0116210_10503151	F001564	GPKLLSGEWPERPSLRFLIHWALRRDELCDPGLCPDAPDDSGRCGHCPLDKLDAAQSSEAGLLLRRALDLRAALKLGVRIRLDEIRADEFQALVVLEEERDALEREQMQMNAHGR*
Ga0116210_1065521	Ga0116210_10655211	F038253	GQIFTHDMPFVSRVFPCAFDDMSAMETHGKNTKGVQEELLRIIQSDEARELIESMANRMAVIEEAYYRIRELREAVQPYIPDNSEYDEDYWIAAYLVRPHASTVIEKFRQLREIQHKLAKIEGQLQEMDRHGSYLEDKLGDLDAAQENMGDKIYKLISEDAKSYLSFGDSNLYDLLYESTREWAAKQLSANRS*
Ga0116210_1069169	Ga0116210_10691691	F020112	MVSKAFKNCVELVEEILREGYRLQIPSTCVEKLIKVHVGADKRTIQKYMKMLTEDLGFLETTAKNPLGIIIYRIDIPTIEQYVSEHMKEKLRQLTLFDLRVRQEEEVKAENT*
Ga0116210_1073309	Ga0116210_10733092	F091441	VTLAELQTKRDEIVRSLGVLKIQFGERSVEYGRQAEALAAIDREIARLTAPEQRVFQIKGSRGLE*
Ga0116210_1095897	Ga0116210_10958971	F061950	MPKMECPKCGEALEEIIRVIEVRCRFDEEEDDYLKEAEGERFIDLCPKCRTELEVF*
Ga0116210_1097936	Ga0116210_10979362	F102263	VVDGGEPGVDSRDEGKHTGRNDLLFVEKMMWMVERV*
Ga0116210_1099495	Ga0116210_10994952	F103508	MIKEEKSLKEGVEKTFEKQENRVWISCLAFGIFIGYSSLWAKVTDCFHYPILG
Ga0116210_1108259	Ga0116210_11082592	F028996	MRSETYMSKINLQRGKLTVENRKSREKKRICSEVSVNSPGNPWSQSRRRNGRLWWEGFAEKESFKPGVKE*