Sample 3300010283

Overview

Basic Information
IMG/M Taxon OID	3300010283 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0120398 \| Gp0147148 \| Ga0129312
Sample Name	Orangutan group fecal microbial communities from Wisconsin, USA - O827 metagenome
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	254915007
Sequencing Scaffolds	11
Novel Protein Genes	11
Associated Families	7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Orangutan Group Fecal → Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	USA: Wisconsin
Coordinates	Lat. (^o)	43.07	Long. (^o)	-89.4	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F026592	Metagenome / Metatranscriptome	197	Y
F029444	Metagenome	188	Y
F047125	Metagenome / Metatranscriptome	150	N
F068855	Metagenome	124	N
F074899	Metagenome / Metatranscriptome	119	N
F090514	Metagenome	108	N

Scaffold	Taxonomy	Length	IMG/M Link
Ga0129312_1000207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	60034	Open in IMG/M
Ga0129312_1000246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	53543	Open in IMG/M
Ga0129312_1001129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	16921	Open in IMG/M
Ga0129312_1002992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7847	Open in IMG/M
Ga0129312_1003579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	6811	Open in IMG/M
Ga0129312_1006595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4313	Open in IMG/M
Ga0129312_1012783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2622	Open in IMG/M
Ga0129312_1024985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1551	Open in IMG/M
Ga0129312_1025728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1515	Open in IMG/M
Ga0129312_1058059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	790	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0129312_1000207

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

60034

Open in IMG/M

Ga0129312_1000246

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

53543

Open in IMG/M

Ga0129312_1001129

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

16921

Open in IMG/M

Ga0129312_1002992

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

7847

Open in IMG/M

Ga0129312_1003579

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

6811

Open in IMG/M

Ga0129312_1006595

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

4313

Open in IMG/M

Ga0129312_1012783

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

2622

Open in IMG/M

Ga0129312_1024985

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

1551

Open in IMG/M

Ga0129312_1025728

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

1515

Open in IMG/M

Ga0129312_1058059

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

790

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0129312_1000207	Ga0129312_100020721	F026489	LVAKENQKTTSDFDALEPRKRGCSPLLTPKKRATPEKTEDSRLFGVKIF*
Ga0129312_1000246	Ga0129312_100024615	F047125	MDVVLLLMVLGVMLSGFRAADALDHIRREILRQEGKRRGWWS*
Ga0129312_1001129	Ga0129312_10011295	F090514	MNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGIFFAKRPIFVYFADIPPRLTGAKWFVILLTIVPAGSRTWAGSSLPLPLQAIFF*
Ga0129312_1002992	Ga0129312_100299213	F074899	KQWNKQAATSYFLDKKPPQSLTQQGLEGSTTLGKDEVGSSNLPSSSTEKP*
Ga0129312_1003579	Ga0129312_10035799	F026489	MLAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKGWATPEKTEDSRLFGVKIF*
Ga0129312_1006595	Ga0129312_10065957	F026489	VAKENQKTTSDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF*
Ga0129312_1012783	Ga0129312_10127833	F068855	MCPSSSVPTVEAQGPQVRKSLAPQWLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSTALSEGGAVW*
Ga0129312_1024985	Ga0129312_10249854	F026592	AANSILCCLRTASPQGIAALAAQGGVATLTERSEEAFSVKQFSSVDGK*
Ga0129312_1025728	Ga0129312_10257282	F068855	MCPSSSVPTVEVQGPQARKALAPQGLQDEKERENANVQNAGWLHSFDADYHYRSSDLHYHVNVSAALSEGGAAW*
Ga0129312_1058059	Ga0129312_10580592	F029444	LTGFELEDLMSWTVSNLQRPFREDFSLEKSGIIAEKGAQIFGRRFVGPDGLRKRRPF*
Ga0129312_1063435	Ga0129312_10634351	F026489	SDFDALEPRKRGCSPLLTPKGWATPEKTEDSRLFGVKIF*

Scaffold ID

Protein ID

Family

Sequence

Ga0129312_1000207

Ga0129312_100020721

F026489

LVAKENQKTTSDFDALEPRKRGCSPLLTPKKRATPEKTEDSRLFGVKIF*

Ga0129312_1000246

Ga0129312_100024615

F047125

MDVVLLLMVLGVMLSGFRAADALDHIRREILRQEGKRRGWWS*

Ga0129312_1001129

Ga0129312_10011295

F090514

MNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGIFFAKRPIFVYFADIPPRLTGAKWFVILLTIVPAGSRTWAGSSLPLPLQAIFF*

Ga0129312_1002992

Ga0129312_100299213

F074899

KQWNKQAATSYFLDKKPPQSLTQQGLEGSTTLGKDEVGSSNLPSSSTEKP*

Ga0129312_1003579

Ga0129312_10035799

F026489

MLAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKGWATPEKTEDSRLFGVKIF*

Ga0129312_1006595

Ga0129312_10065957

F026489

VAKENQKTTSDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF*

Ga0129312_1012783

Ga0129312_10127833

F068855

MCPSSSVPTVEAQGPQVRKSLAPQWLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSTALSEGGAVW*

Ga0129312_1024985

Ga0129312_10249854

F026592

AANSILCCLRTASPQGIAALAAQGGVATLTERSEEAFSVKQFSSVDGK*

Ga0129312_1025728

Ga0129312_10257282

F068855

MCPSSSVPTVEVQGPQARKALAPQGLQDEKERENANVQNAGWLHSFDADYHYRSSDLHYHVNVSAALSEGGAAW*

Ga0129312_1058059

Ga0129312_10580592

F029444

LTGFELEDLMSWTVSNLQRPFREDFSLEKSGIIAEKGAQIFGRRFVGPDGLRKRRPF*

Ga0129312_1063435

Ga0129312_10634351

F026489

SDFDALEPRKRGCSPLLTPKGWATPEKTEDSRLFGVKIF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300010283: Orangutan group fecal microbial communities from Wisconsin, USA - O827 metagenome

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences