3300010279: Orangutan group fecal microbial communities from fecal samples from Wisconsin, USA - O1105 metagenome

Overview

Basic Information

• IMG/M Taxon OID: 3300010279
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0120398 | Gp0147149 | Ga0129313
• Sample Name: Orangutan group fecal microbial communities from fecal samples from Wisconsin, USA - O1105 metagenome
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 253261968
• Sequencing Scaffolds: 17
• Novel Protein Genes: 18
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Orangutan Group Fecal → Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.07
  • Long. (^o): -89.4
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F047125	Metagenome / Metatranscriptome	150	N
F056682	Metagenome	137	Y
F059106	Metagenome	134	N
F068855	Metagenome	124	N
F074899	Metagenome / Metatranscriptome	119	N
F078004	Metagenome	117	N
F078822	Metagenome	116	N
F088921	Metagenome	109	N
F092227	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0129313_1000069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	103528
Ga0129313_1000089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	90007
Ga0129313_1004703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter	5859
Ga0129313_1006537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4567
Ga0129313_1020852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1777
Ga0129313_1025054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1543
Ga0129313_1030970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	1304
Ga0129313_1031130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1299
Ga0129313_1033277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1232
Ga0129313_1035921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	1161
Ga0129313_1045455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp.	968
Ga0129313_1058171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	802
Ga0129313_1074255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	666
Ga0129313_1086434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	595
Ga0129313_1105754	Not Available	512
Ga0129313_1106397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	509
Ga0129313_1107908	Not Available	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0129313_1000069	Ga0129313_1000069100	F047125	MDVALLLMVLGVMLSGFRLADVLDHIRRKIIQQEGRRRGWWS*
Ga0129313_1000089	Ga0129313_10000896	F092227	MKERKRKNAMRIACLVMAGVFVLSLLASILVMLF*
Ga0129313_1002295	Ga0129313_10022957	F078004	LSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDIHMIRHALVIAVINTFYRLTVDADRMTWMRQGITERFSSLSLLRKALTAGAVTVTGVLAAHHDVSLAAQTVLIIGTIFHNAF*
Ga0129313_1004703	Ga0129313_10047036	F032286	MVKWVCQIVTPIRHRALVFNTRLFAGTAADDVLVTGGTFRFCRLMCLCVKRRNIMLNDKHRSLLNSALFRADNRTEQKTISPFSLALIFTFDFAVLPECRSCPEVRSRRFVPFGALNAALRRRTYPVRTVMKFSRFRCDCKTILAKNTALSRISKR*
Ga0129313_1006537	Ga0129313_10065373	F068855	VEVQGPQARKSLAPQGLQAEKESENVNVRNAGWLHSFDADYHYHGSDLHYHVNVSAALSEGGAAW*
Ga0129313_1020852	Ga0129313_10208522	F068855	VEAQGPQVRKSLAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSTALSEGGAAW*
Ga0129313_1025054	Ga0129313_10250541	F074899	MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVTSSNLVSSSTEKP*
Ga0129313_1030970	Ga0129313_10309702	F068855	VPTVEAQGPQVRKSLALQGLQAEKESENANVRNAGWLHFFDADYHYRGSDLHYHVNVSAALSEGGAVW*
Ga0129313_1031130	Ga0129313_10311303	F068855	VPTVEAQGPQVRKTLALQGLQAEKENENANVRNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGRAVW*
Ga0129313_1033277	Ga0129313_10332772	F074899	MSGRKKWNKQAATSSFLDKKLPKNLVQQGMEGSTAVGKDEVGSSNLPSSSNINRLNHLI*
Ga0129313_1035921	Ga0129313_10359211	F068855	LAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW*
Ga0129313_1045455	Ga0129313_10454552	F032286	MVKWVCQIVTPVRHRALIFDVRLSAGNTANDTLVTGNTRSFCHLMCLCVKRRNIILNGKRHSLLNSALFRADSHTVQKTISPFSLALILTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENALKNADFHAHGQDRERAEI*
Ga0129313_1058171	Ga0129313_10581712	F078822	LSSTFFDIFLSLPNAFLKAFHPHAVRFSAAFLLVHRFYLAFEELLSCATAYL*
Ga0129313_1074255	Ga0129313_10742552	F068855	VEAQGPQARKSLAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW*
Ga0129313_1086434	Ga0129313_10864341	F088921	LGTTIRLYKIGVGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANESAM
Ga0129313_1105754	Ga0129313_11057541	F059106	VWKIRMILLQIFVWIVDLKVRERSTEYLKKDIKYRRVTIEVHV*
Ga0129313_1106397	Ga0129313_11063972	F056682	MKTQSRAGKVANQSVGQSEMYPASFWAFPSKNRSTFPIQELRKNREDQEVL*
Ga0129313_1107908	Ga0129313_11079081	F068855	MCPSSSVPTVEVQGPQARKALAPQGLQDEKERENANVQNAGWLHSFDADYHYHGSDLHYHVNVS