Sample 3300010054

Overview

Basic Information
IMG/M Taxon OID	3300010054 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0067852 \| Gp0122837 \| Ga0098069
Sample Name	Marine viral communities from Cariaco Basin, Caribbean Sea - 27_WHOI_OMZ
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	101500707
Sequencing Scaffolds	9
Novel Protein Genes	9
Associated Families	7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	2
Not Available	6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Caribbean Sea: Cariaco Basin
Coordinates	Lat. (^o)	10.847	Long. (^o)	-65.114	Alt. (m)	N/A	Depth (m)	263
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002667	Metagenome	539	Y
F025299	Metagenome / Metatranscriptome	202	N
F039681	Metagenome	163	Y
F044724	Metagenome	154	N
F052647	Metagenome	142	N
F055665	Metagenome	138	Y
F095307	Metagenome	105	N

Family

Category

Number of Sequences

3D Structure?

F002667

Metagenome

539

F025299

Metagenome / Metatranscriptome

202

F039681

Metagenome

163

F044724

Metagenome

154

F052647

Metagenome

142

F055665

Metagenome

138

F095307

Metagenome

105

Scaffold	Taxonomy	Length	IMG/M Link
Ga0098069_102963	All Organisms → Viruses → Predicted Viral	3807	Open in IMG/M
Ga0098069_110835	Not Available	1535	Open in IMG/M
Ga0098069_111359	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1484	Open in IMG/M
Ga0098069_118973	Not Available	1011	Open in IMG/M
Ga0098069_119015	All Organisms → Viruses → Predicted Viral	1009	Open in IMG/M
Ga0098069_129652	Not Available	717	Open in IMG/M
Ga0098069_134146	Not Available	640	Open in IMG/M
Ga0098069_138777	Not Available	577	Open in IMG/M
Ga0098069_145355	Not Available	506	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0098069_102963

All Organisms → Viruses → Predicted Viral

3807

Open in IMG/M

Ga0098069_110835

Not Available

1535

Open in IMG/M

Ga0098069_111359

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

1484

Open in IMG/M

Ga0098069_118973

Not Available

1011

Open in IMG/M

Ga0098069_119015

All Organisms → Viruses → Predicted Viral

1009

Open in IMG/M

Ga0098069_129652

Not Available

717

Open in IMG/M

Ga0098069_134146

Not Available

640

Open in IMG/M

Ga0098069_138777

Not Available

577

Open in IMG/M

Ga0098069_145355

Not Available

506

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0098069_102963	Ga0098069_1029631	F052647	FMPLIYVSVGLTATYFIGKLILGHMTQLKKVKRGIEVQKEKKSFENGLEDLIDNSPEMYVKVMQELEHLKTNGADEKQMSSLQRKADLLKMVVENQEIINLAGKPLFRVLGKFVGNIGR*
Ga0098069_110835	Ga0098069_1108352	F044724	AGQSYLTKCIIESNSINLLPKVFQVPPILGGLGVFTNSLTPMLDAVECNTPLQLGATQQFRIYGQNFIANTVANRLGLGLHYSESVTNMKEKFYDMPTNETNTGTAATSVAGENVTINDGVFLEDIMPTVVSGVVTLSESYIGYMSVTSNDFGNSMPLNVPVQPISTALGTTTSVGMAKQPHYTNIHMPMKSSCLISHSYVQDEALTATGNFTITYGYTKS*
Ga0098069_111359	Ga0098069_1113592	F002667	MEEVLSASLILVASICAGLSCVFIARNRGSINKHSKQRIKDYESDIKYLGEVKKADAKEYREEILRLKGSINKMKQGTTVTDTDMANSGLGDIIMQLIPNKYRKAASFLVPQVEEAVKKDPAIIERVYEKIKSANTASNKQAQSGSEDQTANTL*
Ga0098069_118973	Ga0098069_1189731	F039681	HDLSLPLLLAQSTNLATLTPSTSSFHQTEHDSALPIDEVLSFISDSDKCELLHNGNDTDFDKTWLIQPDMTAWSYKIALNMGIGLKVSAYTSGNITVDNIHLTITEIGDGAGDTVIADLRIPTGASALSATGEQIIMFHADIMNKIRFNNNKPIKVRLQTESTKSGTATYQVGILPVYPMIPTAVPKEWLLSQVEIHLHASLDHAFPIWRDSDNDQRLDYSGCSPDGCNSALDEMGTV*
Ga0098069_119015	Ga0098069_1190152	F044724	LTSWDIATSTSIGTGVAQTEINGTQPLTKPTQAQTLIEVVPFMASTGSLTAGQTYLTKCIIESNSINLLPKVFQVPPIMGGLGTFTNSLTPMLDSVECNTPLVLGATQQFRIYGQNFIANTVANRLGLGLHYSESQTTLKEKFYDMPTNETNTGLTATSTVGENLTINDGVFLEDIYPTVVSGVVTASQSYIGYMSVTSNDFGNSMPLNVPVQPISTALGTTTSVGMAKQPHFTNIHMPMKSSCLISHSYVQDEALTATGNFTITYGYTKA*
Ga0098069_129652	Ga0098069_1296522	F095307	LTSWDIANPTSIGTGVAKTEINDANPLTKPTQAQTLIEVVPYMSSIAALTAGQSYLTKCIIESNSINLLPKNFLVPPILGGLGTFASSLTPMLDTVECNTPLQLGATQQFRIYGQNFVANTVANKLGLALHYSEAQTSAKEMFYDLPTNETGTGTAATTVAGENFTINDGTFLETITPVVTSGVVT
Ga0098069_134146	Ga0098069_1341462	F055665	KLDQFQSSFFGSLGAASKKLDQATGQATFKALTKDNPMMGFVAEYMMKRGNLGGLVGSESQNTPPKQPQKTDKLGLK*
Ga0098069_138777	Ga0098069_1387772	F052647	LIEPYLPLIYLITGVTASYFSAKLILNHMTSIKKVKRSIDVQKDKKSFENGIEDLIENSPQMYSKVLQELQYLKENGADEKQMASLQRKADLLKMAVDNQEIINLAG
Ga0098069_145355	Ga0098069_1453552	F025299	MIIEDIPFFTEFIVLGIVLGFGYGFTKLFLNHAKDKSRIKRSERKAKEANSVEDELDKYLNNIPAITQHLEIELMNLKEKGATPEQCKSLESKLDLARKAQQYEMPIRMLGKPILKKVLNLVDKFGV*

Scaffold ID

Protein ID

Family

Sequence

Ga0098069_102963

Ga0098069_1029631

F052647

FMPLIYVSVGLTATYFIGKLILGHMTQLKKVKRGIEVQKEKKSFENGLEDLIDNSPEMYVKVMQELEHLKTNGADEKQMSSLQRKADLLKMVVENQEIINLAGKPLFRVLGKFVGNIGR*

Ga0098069_110835

Ga0098069_1108352

F044724

AGQSYLTKCIIESNSINLLPKVFQVPPILGGLGVFTNSLTPMLDAVECNTPLQLGATQQFRIYGQNFIANTVANRLGLGLHYSESVTNMKEKFYDMPTNETNTGTAATSVAGENVTINDGVFLEDIMPTVVSGVVTLSESYIGYMSVTSNDFGNSMPLNVPVQPISTALGTTTSVGMAKQPHYTNIHMPMKSSCLISHSYVQDEALTATGNFTITYGYTKS*

Ga0098069_111359

Ga0098069_1113592

F002667

MEEVLSASLILVASICAGLSCVFIARNRGSINKHSKQRIKDYESDIKYLGEVKKADAKEYREEILRLKGSINKMKQGTTVTDTDMANSGLGDIIMQLIPNKYRKAASFLVPQVEEAVKKDPAIIERVYEKIKSANTASNKQAQSGSEDQTANTL*

Ga0098069_118973

Ga0098069_1189731

F039681

HDLSLPLLLAQSTNLATLTPSTSSFHQTEHDSALPIDEVLSFISDSDKCELLHNGNDTDFDKTWLIQPDMTAWSYKIALNMGIGLKVSAYTSGNITVDNIHLTITEIGDGAGDTVIADLRIPTGASALSATGEQIIMFHADIMNKIRFNNNKPIKVRLQTESTKSGTATYQVGILPVYPMIPTAVPKEWLLSQVEIHLHASLDHAFPIWRDSDNDQRLDYSGCSPDGCNSALDEMGTV*

Ga0098069_119015

Ga0098069_1190152

F044724

LTSWDIATSTSIGTGVAQTEINGTQPLTKPTQAQTLIEVVPFMASTGSLTAGQTYLTKCIIESNSINLLPKVFQVPPIMGGLGTFTNSLTPMLDSVECNTPLVLGATQQFRIYGQNFIANTVANRLGLGLHYSESQTTLKEKFYDMPTNETNTGLTATSTVGENLTINDGVFLEDIYPTVVSGVVTASQSYIGYMSVTSNDFGNSMPLNVPVQPISTALGTTTSVGMAKQPHFTNIHMPMKSSCLISHSYVQDEALTATGNFTITYGYTKA*

Ga0098069_129652

Ga0098069_1296522

F095307

LTSWDIANPTSIGTGVAKTEINDANPLTKPTQAQTLIEVVPYMSSIAALTAGQSYLTKCIIESNSINLLPKNFLVPPILGGLGTFASSLTPMLDTVECNTPLQLGATQQFRIYGQNFVANTVANKLGLALHYSEAQTSAKEMFYDLPTNETGTGTAATTVAGENFTINDGTFLETITPVVTSGVVT

Ga0098069_134146

Ga0098069_1341462

F055665

KLDQFQSSFFGSLGAASKKLDQATGQATFKALTKDNPMMGFVAEYMMKRGNLGGLVGSESQNTPPKQPQKTDKLGLK*

Ga0098069_138777

Ga0098069_1387772

F052647

LIEPYLPLIYLITGVTASYFSAKLILNHMTSIKKVKRSIDVQKDKKSFENGIEDLIENSPQMYSKVLQELQYLKENGADEKQMASLQRKADLLKMAVDNQEIINLAG

Ga0098069_145355

Ga0098069_1453552

F025299

MIIEDIPFFTEFIVLGIVLGFGYGFTKLFLNHAKDKSRIKRSERKAKEANSVEDELDKYLNNIPAITQHLEIELMNLKEKGATPEQCKSLESKLDLARKAQQYEMPIRMLGKPILKKVLNLVDKFGV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300010054: Marine viral communities from Cariaco Basin, Caribbean Sea - 27_WHOI_OMZ

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences