3300009947: Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 67 mira

Overview

Basic Information

• IMG/M Taxon OID: 3300009947
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114530 | Gp0149131 | Ga0131849
• Sample Name: Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 67 mira
• Sequencing Status: Permanent Draft
• Sequencing Center: Center for Advanced Technologies in Genomics, Sao Paulo University
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 45575039
• Sequencing Scaffolds: 22
• Novel Protein Genes: 25
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ZCTH02-B6	1
Not Available	12
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Compost Microbial Communities From Sao Paulo Zoo, Brazil
• Type: Engineered
• Taxonomy: Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Sao Paulo Zoo, Brazil
• Coordinates
  • Lat. (^o): -23.651072
  • Long. (^o): -46.620675
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018909	Metagenome / Metatranscriptome	232	Y
F029085	Metagenome / Metatranscriptome	189	N
F047639	Metagenome / Metatranscriptome	149	Y
F059782	Metagenome	133	Y
F075995	Metagenome / Metatranscriptome	118	Y
F078430	Metagenome	116	N
F088555	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0131849_100146	All Organisms → cellular organisms → Bacteria → Terrabacteria group	10234
Ga0131849_100346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	6423
Ga0131849_100713	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ZCTH02-B6	4114
Ga0131849_101638	Not Available	2521
Ga0131849_101811	All Organisms → cellular organisms → Bacteria → Proteobacteria	2391
Ga0131849_102896	All Organisms → cellular organisms → Bacteria	1900
Ga0131849_102917	Not Available	1893
Ga0131849_103031	Not Available	1857
Ga0131849_103104	All Organisms → Viruses → Predicted Viral	1832
Ga0131849_103381	All Organisms → cellular organisms → Bacteria → Proteobacteria	1765
Ga0131849_103620	All Organisms → Viruses → Predicted Viral	1713
Ga0131849_106570	Not Available	1312
Ga0131849_107881	Not Available	1210
Ga0131849_108082	Not Available	1198
Ga0131849_110452	Not Available	1064
Ga0131849_111504	All Organisms → cellular organisms → Bacteria	1020
Ga0131849_112964	Not Available	966
Ga0131849_115951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	879
Ga0131849_123127	Not Available	740
Ga0131849_124875	Not Available	715
Ga0131849_131636	Not Available	628
Ga0131849_141621	Not Available	512

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0131849_100146	Ga0131849_10014613	F078430	MEGAALMATMLGGVVLPRVYVQESEPDWAGKPIRRWTLRTRPLTWEQYAAIEQMVRTVGVARTIERAVDGTPHVVGASQVALVLDEGGGRVTTAXVYITSFRVSRPLSLPDRREVELELEEA*
Ga0131849_100346	Ga0131849_1003468	F088555	MYFDETVSLLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNTDADVQIHYAPDQNGQPGTYQTTLQLPDGDYQTPVPVWVKVTFAPATEPTLRTDLRHHLQWLEAVKG*
Ga0131849_100713	Ga0131849_1007136	F059782	VRVEFETARGRVVPGKGSQVAAFFVALEVESEQLTVPERGELLQRLTTRIVDAIAEEFGGEEIEVRRRHD*
Ga0131849_101638	Ga0131849_1016382	F078430	MGRATLMATMLGGVVLPRVYVQESEPDWAGKLIRRWTLRTRPLTWEQYAAIEQMVREVGVARNIERAVDGTPHALGASQVALILDEGGGRTTTAMVYITAYRVVRPXSLPQRXEIEXQLEEA*
Ga0131849_101811	Ga0131849_1018114	F088555	MAIRMYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNTDADVQIHYALDQGGQPGTYQTNLQLPDGDYQTPVPVWVKVTFAPTTEPTLRTDLRHHLQWLEAIAG*
Ga0131849_102896	Ga0131849_1028965	F078430	MATMLGGVALPSVYVQEMEPDWVGKPVRRWTLRTRPLTWEQFEAIEGLVREVGIARTIERAVDGTPHVLGASQVGFVLDEGGGQTTETAVYITAYRVVRPLSLPQRREIELQLEEA*
Ga0131849_102917	Ga0131849_1029172	F059782	VRVEFETARGRVVPGKGSQVAAFFVALEVHSEQLSVPERAELTQRLTTRIAEXIADEFGGEEVELRRRHE*
Ga0131849_103031	Ga0131849_1030312	F059782	VLGSDXVRVEFETARGRVIPGTGGQVATFFVALEIWSEQLTGPERAELTHRLSTRIMEAIAEEFGGEEIEIRRLRE*
Ga0131849_103104	Ga0131849_1031043	F088555	MYFDETVSSLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNXDADVQIHYAPDQNGQPGAYQTNLQLPDGDYQTPVPVWVRVTFAPATEPTLRTDLRHWLQWLEAVKG*
Ga0131849_103381	Ga0131849_1033812	F088555	MALRMYFDETVSSLVRDDISPTLGSPDSYEGPGAGGTVERKLYIYSDNFQRTYXQVQLTSLNXDAQVQLHYALDDNGSPGTWQTTVDLPDGDYRTPYPIWVRVTFAPTDEPTLRTDLRHWLQWLEAIAG*
Ga0131849_103620	Ga0131849_1036205	F059782	MRVEFETARGRVVPGKGSQVAAFFVALEIESEQLTVPERGELLQRLTTRIVDAIAEEFGGEEIEVRRPRE*
Ga0131849_106570	Ga0131849_1065704	F059782	VRVEFETARGRVVPGKGSQVAAFFVALEVESEQLTVPERGELLQRLTTRIVDAIADEFGGEEIEVRRPRE*
Ga0131849_107881	Ga0131849_1078812	F078430	VEGAALMATMLGGVVLPSVYVQEMEPDWVGKLIRRWTLRTRPLTWEQYAAIEQMVREVGVARTIERAVDGTPXVLGASQVALILDEGGGRTTTAMVYXTAYRVVRPLSLPQRREXXLQLEEA*
Ga0131849_108082	Ga0131849_1080822	F078430	MLGGVVLPRVYVQEMEPDWVGKLIRRWTLRTRPLTWEQYAAIEQMVRDVGVARSIERAVDGTPHVLGAXXVXLVLDEGGGRTTTAMVYITAYRVVRPLSLPQRREIELQLEEV*
Ga0131849_110452	Ga0131849_1104523	F059782	VCGYVLGSDVVRVEFETARGRVIPGTGGQVATFFVALEIWSEQLTGPERAELTHRLSTRIMEAIAEEYGGEEIEVRRRHD*
Ga0131849_111504	Ga0131849_1115041	F078430	GKLIRRWTLRTRPLTWEQYAAIEQMVRDVGVARSIERAVDGTPHVLGAGQVGFVLDEGGGQTTETVVYITAYRVVRPLSLPQRREIELQLEEA*
Ga0131849_112964	Ga0131849_1129642	F088555	LXLRRARRLAEGPSKAPPPFREGSGMAIRMYFDETVSLLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQISALNXDXDVQIHYALDQGGQPGTYQTXLQLPDGDYQTPVPVWVKVTFAPVTEPTLRTDLRHHLQWLEAVKG*
Ga0131849_115951	Ga0131849_1159511	F075995	MRKYRPLKKANVYITKNFKRVFYGMRTLYVKDHTGRVYINYKNRYYQAHFDGYH
Ga0131849_115951	Ga0131849_1159512	F029085	MKDIKNDKLKIDELLEENINEQLENGSSDLVSLIAISELTNLEKLKVITRLKEVQVPLLTKLYMYAETFNVPFMKNLADNILQLQISIRGLGRKELVNIVRESTPTETKRGLFGTKDVFR
Ga0131849_115951	Ga0131849_1159513	F047639	DKSSTITYHLSSKFKPDFLINPDHIFIYNGYRTVIITDKSAETINPLDFNSKFNASDFKTAIESKLIKDTFSTLKPNLFDTTTIILILNLVMTFGILYLLLKGQGVL*
Ga0131849_123127	Ga0131849_1231272	F059782	VRVEFETARGRIVQGKGSQVAAFFVALEIESEXLTVPERGELLQRLTTRIVDAIADEFGGEEIEVRRRHE*
Ga0131849_124875	Ga0131849_1248752	F018909	MKWIKTAIGAVIAISVVPMVVNVISDLTGTGGALEGTVAGVLLDLAPIVFVAGILSFLFLKTGTRD*
Ga0131849_131636	Ga0131849_1316361	F059782	GRAVQGRGSQLAAFSVLLDIESEQLSVMERAELAQRLTVRFAQAIAEEFGGEEIEIRRSRE*
Ga0131849_141621	Ga0131849_1416211	F029085	NISEQLESGSSDLVSLIAISELTNLEKLKVITRLKDEQVPLLAKLYMYAETFNVXFMKNLADNILQLQISIRGLGRKELVNIVRESTPTETKRSLFGPKDVFR*
Ga0131849_141621	Ga0131849_1416212	F075995	MSKYRPLRKANVYITKNFKKVFYGMRTLYVKDHTGRVFIRYKNRYYQAHFDGYHTYHV