3300009908: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 6, Depth 6m; RNA IDBA-UD

Overview

Basic Information

• IMG/M Taxon OID: 3300009908
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116874 | Gp0151161 | Ga0132233
• Sample Name: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 6, Depth 6m; RNA IDBA-UD
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9826234
• Sequencing Scaffolds: 4
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium B17	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → meromictic pond → pond water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.548517
  • Long. (^o): -70.622961
  • Alt. (m): N/A
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000077	Metagenome / Metatranscriptome	2584	Y
F000237	Metagenome / Metatranscriptome	1498	Y
F025017	Metagenome / Metatranscriptome	203	N
F046404	Metagenome / Metatranscriptome	151	Y
F066528	Metagenome / Metatranscriptome	126	Y
F103354	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0132233_101080	Not Available	812
Ga0132233_101510	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium B17	721
Ga0132233_103671	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	529
Ga0132233_104289	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0132233_101080	Ga0132233_1010801	F066528	PETMTEYATPADFANWEAKAKAMTVAQLLYTVKDCQQAEAAMRGWNPVKEGYYSDQASTYGMELTRRRRA*
Ga0132233_101510	Ga0132233_1015101	F103354	GAKKAVNESRSFASKAAGVAPKTQIVESNDFVKRMQKIAGII*
Ga0132233_101552	Ga0132233_1015521	F000237	LFNKFYKTYYIIFTNKHLNTDQLTRLMVLHYFTP*YYLYLVKLHVMFCHES*DSDSGENVYEDKSGTYVS*FYDAFLKEIQDA*Y*TLYVFVYFIIHHFDASTVNYFFFER*NISELDEIRFYGVAPH*YFRPLMGLLVVSPSHYEGLM*MALWFVLLASLPIIYNFYNSSKYYLPIIPMQSSMSQTLCFILFMLSMYCTASMLPCGRYYYAPEGGYVGNP*VKFSYQYAYLYMA*IL
Ga0132233_103671	Ga0132233_1036711	F025017	MASNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIKFSSTTSAAP
Ga0132233_104068	Ga0132233_1040681	F000077	TTHKDYSESVDALERAIVVLKKQSHNRKQASLVELSSLKGMNLIPASAKKTIDSFLAQDPEETPTGLDVTAPEAAGYEFQSHGVIDMLEKLHDKFIDERTTLEKEEMNSKHAYDMLMQDLTAQTDQATRDRGEKTEFKAAKLQAKADAEGSLSDTTTTRNSDQTYLDDLS
Ga0132233_104289	Ga0132233_1042892	F046404	MNEKMSKRRIQIRDLQKQEIEEKQERRLLIRLHIFYLLIAAHIK*