Sample 3300009903

Overview

Basic Information
IMG/M Taxon OID	3300009903 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0116874 \| Gp0151165 \| Ga0132237
Sample Name	Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 7, 3m depth; RNA IDBA-UD
Sequencing Status	Permanent Draft
Sequencing Center	Marine Biological Laboratory
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	6815191
Sequencing Scaffolds	8
Novel Protein Genes	9
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1
Not Available	4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater biome → meromictic pond → pond water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Falmouth, Massachusetts
Coordinates	Lat. (^o)	41.548517	Long. (^o)	-70.622961	Alt. (m)	N/A	Depth (m)	3
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F005974	Metagenome / Metatranscriptome	384	Y
F010159	Metagenome / Metatranscriptome	307	Y
F013634	Metagenome / Metatranscriptome	269	Y
F017644	Metagenome / Metatranscriptome	239	Y
F025485	Metagenome / Metatranscriptome	201	Y
F031077	Metagenome / Metatranscriptome	183	Y
F042640	Metagenome / Metatranscriptome	158	N
F048168	Metagenome / Metatranscriptome	148	Y
F078633	Metagenome / Metatranscriptome	116	N

Scaffold	Taxonomy	Length	IMG/M Link
Ga0132237_100318	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	975	Open in IMG/M
Ga0132237_100514	Not Available	825	Open in IMG/M
Ga0132237_100782	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	696	Open in IMG/M
Ga0132237_100878	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	662	Open in IMG/M
Ga0132237_101211	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	585	Open in IMG/M
Ga0132237_101550	Not Available	532	Open in IMG/M
Ga0132237_101743	Not Available	509	Open in IMG/M
Ga0132237_101811	Not Available	501	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0132237_100318

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium

975

Open in IMG/M

Ga0132237_100514

Not Available

825

Open in IMG/M

Ga0132237_100782

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

696

Open in IMG/M

Ga0132237_100878

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium

662

Open in IMG/M

Ga0132237_101211

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

585

Open in IMG/M

Ga0132237_101550

Not Available

532

Open in IMG/M

Ga0132237_101743

Not Available

509

Open in IMG/M

Ga0132237_101811

Not Available

501

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0132237_100318	Ga0132237_1003181	F010159	MSWSIPALIEADIKSGKAQYRTFQTGNGGQSILPVPSNSYVVIFGYDFSPAGGGMTRGTAEVEPNNLTISDGFLRPFETQQISFYTGTDFYPFIHHVDLKSMAYLNSWNAANPDLNFGLTVRYAQEIDNTPIARQVYITSTNDVTITHGLVVTTPRASANAIPVTNRTPLGLTYGGSGQVINTQTNYGPAGTPQQFMQPSPKDYQDFAFGLLPANADGQAFATP
Ga0132237_100318	Ga0132237_1003182	F048168	AMQLRLTLTINNDVVIDDVCAYDLGAAATAGITSGFPHYIPFPRALTGQDTILLRVTNSSGASQLLNAVVFYKNEI*
Ga0132237_100514	Ga0132237_1005141	F013634	MAIALGPLLGAGLGQLQQSKIDKALAGQKTYTKPKTIFGKLIGGVSGRTAAAEASALTKTAPLSEGVMNSLQQRQSLPITGGFSFGGEATKRSYLPFAIVAAIVAAFYFLRGKKGGRRRR
Ga0132237_100782	Ga0132237_1007822	F005974	LRGNPLERAQVYEILNRIGAMSVEEIRKEEDLLK*
Ga0132237_100878	Ga0132237_1008782	F031077	FPLTNVGANGNQFQVDEALLVEKIGFFIPAAADGIAYTGLAGESVKFDLIVGNKTVLKDVACEFGGEQAFFNDGTLGSAVIDLEGVGILIPPQVEYYVVAKSYTTESRLADSIRLGCYLFGTGALLNFNTTI*
Ga0132237_101211	Ga0132237_1012111	F017644	MATGFPATTGDVLTAAAFNGLVAFTVGAAETDNYTAVAADQYQVLVSMNKATAVDFKIPTNA
Ga0132237_101550	Ga0132237_1015501	F078633	DEIQDRVAVIPPDRLNAKHLFAIYIPVIRHTWQPDLDREWYAAVVTKEQVHGPTFEVKAHPDQTAAWVAFATWIGDLVRNPQKFTA*
Ga0132237_101743	Ga0132237_1017431	F042640	HHTYLQCINALESNQNILENLPGYFHTSMWNQAQNLFRKLYEIHETPTDTLVSDYDISEAIKREEAMIMANHLPWFDRTVLSLYLDGWSMAQISRESGINVSVLYESISKSKNKLRHVISKRTEEK*
Ga0132237_101811	Ga0132237_1018112	F025485	MNNARKFLPIIIGSLVAFIVFWISRKMRKSNTANQERFTILEKARGAKLAKSILKKSENEESPTYSEIPA*

Scaffold ID

Protein ID

Family

Sequence

Ga0132237_100318

Ga0132237_1003181

F010159

MSWSIPALIEADIKSGKAQYRTFQTGNGGQSILPVPSNSYVVIFGYDFSPAGGGMTRGTAEVEPNNLTISDGFLRPFETQQISFYTGTDFYPFIHHVDLKSMAYLNSWNAANPDLNFGLTVRYAQEIDNTPIARQVYITSTNDVTITHGLVVTTPRASANAIPVTNRTPLGLTYGGSGQVINTQTNYGPAGTPQQFMQPSPKDYQDFAFGLLPANADGQAFATP

Ga0132237_100318

Ga0132237_1003182

F048168

AMQLRLTLTINNDVVIDDVCAYDLGAAATAGITSGFPHYIPFPRALTGQDTILLRVTNSSGASQLLNAVVFYKNEI*

Ga0132237_100514

Ga0132237_1005141

F013634

MAIALGPLLGAGLGQLQQSKIDKALAGQKTYTKPKTIFGKLIGGVSGRTAAAEASALTKTAPLSEGVMNSLQQRQSLPITGGFSFGGEATKRSYLPFAIVAAIVAAFYFLRGKKGGRRRR

Ga0132237_100782

Ga0132237_1007822

F005974

LRGNPLERAQVYEILNRIGAMSVEEIRKEEDLLK*

Ga0132237_100878

Ga0132237_1008782

F031077

FPLTNVGANGNQFQVDEALLVEKIGFFIPAAADGIAYTGLAGESVKFDLIVGNKTVLKDVACEFGGEQAFFNDGTLGSAVIDLEGVGILIPPQVEYYVVAKSYTTESRLADSIRLGCYLFGTGALLNFNTTI*

Ga0132237_101211

Ga0132237_1012111

F017644

MATGFPATTGDVLTAAAFNGLVAFTVGAAETDNYTAVAADQYQVLVSMNKATAVDFKIPTNA

Ga0132237_101550

Ga0132237_1015501

F078633

DEIQDRVAVIPPDRLNAKHLFAIYIPVIRHTWQPDLDREWYAAVVTKEQVHGPTFEVKAHPDQTAAWVAFATWIGDLVRNPQKFTA*

Ga0132237_101743

Ga0132237_1017431

F042640

HHTYLQCINALESNQNILENLPGYFHTSMWNQAQNLFRKLYEIHETPTDTLVSDYDISEAIKREEAMIMANHLPWFDRTVLSLYLDGWSMAQISRESGINVSVLYESISKSKNKLRHVISKRTEEK*

Ga0132237_101811

Ga0132237_1018112

F025485

MNNARKFLPIIIGSLVAFIVFWISRKMRKSNTANQERFTILEKARGAKLAKSILKKSENEESPTYSEIPA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300009903: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 7, 3m depth; RNA IDBA-UD

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences