3300009860: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 5, Depth 12m; RNA IDBA-UD

Overview

Basic Information

• IMG/M Taxon OID: 3300009860
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116874 | Gp0146831 | Ga0130032
• Sample Name: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 5, Depth 12m; RNA IDBA-UD
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 185394329
• Sequencing Scaffolds: 50
• Novel Protein Genes: 58
• Associated Families: 54

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	24
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	8
All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → unclassified Spirochaetales → Spirochaetales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10	1
All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Pachyviridae → Baltivirus → Baltivirus phi13duo	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Nodensvirus → Synechococcus virus SPM2	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → meromictic pond → pond water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.548517
  • Long. (^o): -70.622961
  • Alt. (m): N/A
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004573	Metagenome / Metatranscriptome	433	Y
F005382	Metagenome / Metatranscriptome	402	Y
F007265	Metagenome / Metatranscriptome	354	Y
F010539	Metagenome / Metatranscriptome	302	Y
F010541	Metagenome / Metatranscriptome	302	Y
F010908	Metagenome / Metatranscriptome	297	Y
F014004	Metagenome / Metatranscriptome	266	Y
F014956	Metagenome / Metatranscriptome	258	Y
F015419	Metagenome / Metatranscriptome	255	Y
F015723	Metagenome / Metatranscriptome	252	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0130032_1000040	Not Available	40253
Ga0130032_1000069	Not Available	30716
Ga0130032_1000107	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	24568
Ga0130032_1001451	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	3619
Ga0130032_1003329	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2309
Ga0130032_1003886	Not Available	2141
Ga0130032_1004549	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → unclassified Spirochaetales → Spirochaetales bacterium	1996
Ga0130032_1005381	Not Available	1848
Ga0130032_1005849	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	1777
Ga0130032_1007712	All Organisms → Viruses → Predicted Viral	1560

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0130032_1000040	Ga0130032_100004018	F035622	MAATKGSCGGTPRVGKKGDPKPARGRGRGAGRGRRSK*
Ga0130032_1000069	Ga0130032_10000696	F035190	MIKEIYIRDPVDPNFKINVLDHSDPIESIISKIKMLFGTRQGQVLGDLNFGLGIEDLVFETRINKMQLEEDIKRQIGQYISESSKYKIVPFVSFGKASGYDYCIINIYIDDQKAFGILIK
Ga0130032_1000107	Ga0130032_100010718	F058177	MAKEVIEEAQVVNQPVDSAQEIEQDAYVPTYKVKPEFRQAVLQAIGDRPFNEIAGLINAISVPTMDHNVLTQVINVLGQFPFVRVEKLLENINNYVEQVIED*
Ga0130032_1001451	Ga0130032_10014518	F032624	MATKQKLTLRKFDGDDSYSWAVFRKSDLPKGHRGPVFYGMARPLVSGCSRSEANYHKRLLEAK*
Ga0130032_1003329	Ga0130032_10033295	F010539	LRGKVNKLIKLENDLHLQISGRPVYTSTALRDSTAFLGDWTLNFDGEIILGEIQLNNNNRFIFNPDNGKVYTISTNLLLSTFTNQVSFAFNGVRYDLYKFANGRFATVDGEVRLIKKE*
Ga0130032_1003886	Ga0130032_10038865	F053254	MATDSQGNNFVFGSSTLTVTSVNINLSADVLDASHLGLDSGSYRLFQKPALLSENELSCEALGTTLLVPGATGTPTFAAFTYAATVQSSNVAYSVGELVRQSLTFKIIPSS*
Ga0130032_1004549	Ga0130032_10045492	F084270	MPRQTGQTNTVFPDGFRLEISTDGTTGSTWEEVGVLAGGATATLTWDDYYLDAGNYEGLVDKAKNPVFAVAPSAVWNWDAAVIAALFPGLFSTSAATTPAVGDDVEYAGTSNQVTLTRSKIRLTHYTVDASGGSETDGDIDWQFTLHNAKIDSGASFNFKGVNEDGLDEFTVSFTGKPDPASTYALFTYFKAD*
Ga0130032_1005381	Ga0130032_10053813	F033779	MTGLMNWKNKRLRRSAMWMILLAILAVVNSCSTAKPILDSVIVRDTLVVTQTKYLIDTLEVMKDTTIYQDRVRVQLQYVDRKVVVEAVCEPDTIRITQTKILTKQEPKVRKWTLETMLGGFAFVLTIVYLLKRWIDKITE*
Ga0130032_1005849	Ga0130032_10058491	F048391	LLFFYCVNWKSKFLLPEFIGLEGDKMNDSKSVEPINNLDYLKELLDDGYVVKGPRKDPSRDLISFKAFLKKGKEFVPELWLSNMGYEFVEPSTFTKGHKIAYKIIDEFPDERFNSNYTLVKGKRNILLYLKVEVPKVE*
Ga0130032_1007712	Ga0130032_10077123	F096249	MNPKAVERLLIDDARLLARREDQIDAELEAERQQCLELFYQWQDGAIEFQGLVPFCMVLDRKCKKNRDLIKWLRKFSIEN*
Ga0130032_1007907	Ga0130032_10079072	F021732	MITKYTVKCTLDKKLGHFVHVIFSSGFGLYGANKPHHEDDNIEIHGWTFEPHDIDLKLYPNINRFNLMPLVDEHEIDWVILNNQSL*
Ga0130032_1008171	Ga0130032_10081713	F070639	MNIIADKIIELLRKNLGNARNISRFYLGNPEELAKADLPAIFVQPISKNITQLDNVYDEMTCRFLIGVCVEEGKFARKNLSEGTATRFLMEIEGGRDSSNDPIETSITYIMRNHFTLENTVVYQEHETLWGERLMTGGVAKEIHTYFTVKVKVKNT*
Ga0130032_1008351	Ga0130032_10083513	F010908	VKQIFSPFQKYECFQVDGVDYICLDYQIIQDSDNKLVDWCSWFKFKRLSDHKHFLLPITKIIETKKEGRAKLCKCK*
Ga0130032_1012018	Ga0130032_10120181	F021885	MRERRTEMNIFEKLRLLAEWSPLITFAQRLAAETDYHAKAVIVSEAAEWIAGRTELEWDDELVEHLADILRSQEGEALVRWILSQLEVTPDAE*
Ga0130032_1013000	Ga0130032_10130001	F025505	MNNLPMIANRVEEKIQDVQLVIQNRELRIFKTGTKEAMPKVTEVLSQLLPVYGIEAKPEHLIEITEFVLTYKLLAVDEIRLAFEKFAKQELDIIDHKLYGKVDLHAIGRILTGYINWRQKIYFAMDSDIQAKKEEEDRMKRLGKVAEEYDKDFDNKLKNFQKPLDEIPVFWYDECVKRGYINEWKEGEKEALWAEAQEMAKQEKPDSDNLIDRKNHLRKIEEGNMPRARALALKLAVWRKVLLR*
Ga0130032_1013189	Ga0130032_10131893	F097314	SNFIIQSIEYNPKSNNPAKTVLLYDEKPNVNDLTKVSNTITLAGASPQSGTVTGSGSGLVGANGATVNIQLSYTPFLNSMTNVLVLAANSGINQVSNTNANVLVFQNGQKLIPTIQYIISGSTVGINVNTHYDGANYEVVVNGVTKG*
Ga0130032_1013968	Ga0130032_10139683	F026005	VSKLDKERQGKVNTIISEIEGFMSEFPPQYENDKESMLGYFSNIICQLDTDIAIEVMKDFGKAGEHQAMVIKVNYGY*
Ga0130032_1015261	Ga0130032_10152611	F021885	MNIFEKLRLLAEWSPLLTYMQTLAAEDDIHAKAVIVSEAAEWVASRTELEWDDELVEHVADIIRSEEGEALIRWILSQLEVSPDE*
Ga0130032_1015261	Ga0130032_10152612	F049303	MSDPVRILAVIAAIAVLVVPYLPAIGKRLAKLWRSLPSAPVPPANGIGVDDLTYVLGLANRLRLDGNEKATDLAKQLLDAMLEVPQK*
Ga0130032_1022334	Ga0130032_10223343	F074737	LQLLHLSKKDKEDADFLNKLSDECVNNSHFLLEVLEEFINTGEVCPDLMDMDFRDETKQESRDMFVIVNMINAMLNRWHNMPHGLHQTMDNAYIKIKEMILLNEEAHHQISEFVFEPED
Ga0130032_1024597	Ga0130032_10245972	F071188	MKKNTLSFSLKSEGLKSNSNHMKEQIEQAIANTVQAVEDGNADALKAFIHLKAVAATVTQALKQIEDAAMEELLNYPKGKAELEGAKVEVRSSAGRWDFKGIQEWISVNHTLKGIEADAKEAAKLAERGKVMYDEDGVEVQPADFTPGKETIFVSLSK*
Ga0130032_1025501	Ga0130032_10255013	F075716	MTSNTFNSFKFQRVDGNSTLTCEISIDTCQEIVDEFITFMRGCGFMDVNIYTAMENAVEEYASYSDHIKKAIEPGLYEPIGK*
Ga0130032_1025670	Ga0130032_10256702	F015851	MSHYIGKKSDCEAYDKKVSNQLGFKGSLTARWSDVRRHPAKSLFSVIAHARITPDEGSGLKLVETLTPDWNEIDQP*
Ga0130032_1026296	Ga0130032_10262962	F099239	MALYTKYNSEGILSRAVVAGVLNMFNNHVNYEQVWDNTDIEEVTVPWFYNQSGDERFMQDFYTHYADVCPPVSVDGNFDQIPRGVITYKGSTINQQRMTSRFVQGHYLKEVDGQLQSYTSYLYSIPLTIPIDCELWIDTQISALKIEQAIMETFYKTVTFYVYFKGLRVGCTAGFPETTTLDKSIQYSFEQDNKIKF
Ga0130032_1028543	Ga0130032_10285431	F049623	STLTDYYVKGKYPKATAIFEQCRAVQKLLLVTSDNYRTLLSSFRQERILVSHMAT*
Ga0130032_1029773	Ga0130032_10297732	F015419	MKYKLTITDENGNDHLYNVSRSSSDEPNNLNDFILKALSVSEDKRRLPFLIQCPNELEVFPSLKMKFENYGSPLLGDEIEAMMVTWRD*
Ga0130032_1033264	Ga0130032_10332641	F071779	GFFNEFAHCGTIGYACGFYNGHLQDPEMDGAVIIRVNHEDWEVIQEFGTIPYSVVYGPLGTFKVERSVPIVMV*
Ga0130032_1033911	Ga0130032_10339111	F010541	MEKQIYLVKYFGNATKYQDLHQTIAAYSKREAVEKYYEKMFYEDYFPEDEFTYGGLIRDCDGNVIAEPGSESIEYDGGHFYAKMFIA*
Ga0130032_1035712	Ga0130032_10357122	F041648	FTNNSLTRYYEERINYLEREKERLTNEARADFKITLDFWIYAQRMVNTYVMLHKESNHEFYADLITGVLKMYEAHDDTALDTSINRLRIESITHCKESIVKCQQITEAR*
Ga0130032_1036647	Ga0130032_10366471	F078426	KGTNHMKKTQKELDEMGIYSERNYYSAVTVLCCGLGAGVCIALSLLVEYLAGRF*
Ga0130032_1036647	Ga0130032_10366472	F046916	MRSKRIDAADWLDSIAEEEALPETGERMSEKEAFELTRGAGYDTEIDAVERIRALIKRYL
Ga0130032_1036957	Ga0130032_10369573	F070639	DKIIELLRKNLGEARSIKKFYLGNPEELAKADLPAIFVQPISKEIHQLDNVYDEMVCKFMIGVCVEEGKYSRKNLSEGTAVRFLMEIEGGRDSNNDPIETSVTYIMRNHFTLENTVLYQEHETVWGERPMTGGVAKEIHTYFTVKVRVKNTS*
Ga0130032_1037109	Ga0130032_10371092	F004573	PENPQTLADVLAFLPLPYDYASQYACVFSAELAERLLAVQEDGARFRVTPRALADGRFMIRGAILSETSGLYQDGFQRLDPSRFNEIDLLPWADAVALLPVEPEPTV*
Ga0130032_1037828	Ga0130032_10378281	F047392	LVKDHKPVTYEGYVLYFVEGKLVGNDRLTQTWSIVPREEAEFEHAFKVETHAIHSDAEEGKPSFVGRNNFKRDYEDSVRYELFHQDEDRGLVLDGIQVGDKPQEFDHETEHYIFPGTLKIGTKWLSEPVTSTLPGSCHHEVIGSEIYNGTNCWVVSSRRDPKKNPLVPNSGTVGKTTRFLVDPLTLSVMRMDSVTEGIGPLGRAFKF
Ga0130032_1045278	Ga0130032_10452781	F077029	ENLQQEVEVPARWLEAIITNLAAKVGIETPQVDVQVIALLEQKAAITLQKAWDGDGDGSPTQINPGIGCYTR*
Ga0130032_1047537	Ga0130032_10475372	F058177	MAKDIQDVTPVTEQPVGAPMGTPPGAQAVDSTQTVEQNAYVPTYKIKPEFKQAVLACIGDRPFNEIAGLIQAINVETMDHTTLTQVINAMGQFPFQRVEKFM
Ga0130032_1050261	Ga0130032_10502611	F088317	MPGPEDNVKYPEPQKFTQEELCKDAPKTRRDLWYGNSYTPTLPPLDESQLVRWIKSGGKEEEKAGRYVMMPPPELPFRKLPVSTKFISCNTRHLKEIGAFRTMLPELFGDAGYKAVDDAYASFAYSEFKTAQKRGQLLNAPNCTAREIGTFIATVYDIQNFPIVIAEASDERVRIQLYKGLPIYCPYDVRRGDYRLCAATA
Ga0130032_1050534	Ga0130032_10505343	F035276	MTKSYILCYNNETKELEHFEVSYSIFVYIRQLENAIKYDTSGVKRLYPFRFGVEE*
Ga0130032_1053525	Ga0130032_10535252	F031407	MTDKEKAVIIIDLIEKVTQEIIDKPLQRKKYLQMRGHLEKAVKLTGNGIKREWSRPPSLPIFQHEKGTAKPFEPETSGDVLADNSPEPTRKARKK*
Ga0130032_1054076	Ga0130032_10540761	F060411	GNKAIRYEYPETAADITLEQYIYFVKFLLPQHPKAELEAIQYMNERDAVYEKIKPYARKLKVGTKDENQATVVRQLVRILDTQEVKDNVRRFLPALISQWETNDDELGIRLQIMDEVWEAKERYPYMAKVVNYFTNIPLDACYGKVAESVELKYLTFLYTKIVNAVNTPTETTYKQLYDFNGKVYTLPEKLMEKSTLLEFTMAAQYDKAVKQIQG
Ga0130032_1054095	Ga0130032_10540951	F014956	MNIQDFALNASLTVCPSHIVEPLHLKRWWRQRGVGELEKYFCTGKKIKYDDEINWNAISDHKKQMWYDSQNFQIQTGNEYSKRQ
Ga0130032_1058183	Ga0130032_10581831	F015997	QPSEVIAGGVARPTPADIRIDKSLISPHIQDAEYRWIVPAIGVSFYDTLIADKGSSTAFTSTAYQQLWDSQLKSFCANAVLYEASPYIVMQMGSNGLYTLDNEYGQNVGVEGLKFYQDTLLQRLDVKKKRIKDYLCSCAAGLTGFVSSAIGCPESTCDEHEEITDIYNTLGIVL*
Ga0130032_1058838	Ga0130032_10588381	F033789	KDWGFTMFDDLPSPFTMKGIKIWPCHSRAEFSHFIAYEGKPYYFRSKNAAILFAKDKLAIDDPEGLCD*
Ga0130032_1058838	Ga0130032_10588382	F025994	MTPEDITKAIDDAIRHHELRVALWSGLVGAVLLAGTWHAILLCK*
Ga0130032_1061566	Ga0130032_10615662	F029413	MRKDSIDKKAIEAAYLIYSERGHKILDYSHDPTDYKRGTVEEPETTSKLKEAYNELTPANVMNGERFEDLEKKADALNLRIDQQQNKLRMCRLRGNFQEMHRCMQEMQDMIKEKERLDARMSVAAPGGNAGQKQQVDYNR
Ga0130032_1068254	Ga0130032_10682541	F015723	YFTFYLISKTNHTMAKIVSITPKGQWQEFYKLEIRFDNGDFGTAFAKSPTPSYGVGDEVEYSKNEKGTIKIQRPNGFGGSTGGSFATASKSAGDDRSASIIRQVALKAAVEYACAAGHDVPTILVNAEAFNKWMTGQSEAAVTHTEHFATRNESPF*
Ga0130032_1068664	Ga0130032_10686641	F081917	RLGMTVQDVLEWVGITSAGGLIGWFSGRRKTKAEGVEATILVFERTVKHLEVQVEELRKENKELRDRVKYLEERLSSGISDQ*
Ga0130032_1073396	Ga0130032_10733961	F080037	QALAYAAAIRDNAQDDGQPIPMDLVISFQDDYNKIIASLHEAHHLAS*
Ga0130032_1076130	Ga0130032_10761301	F060698	MEKNFTNIQFKWTFESIADNIPTIMLLTIILTYGVNAYLTAIFLPINFWVALAATSILQLGRFAVVFMDFLNPTKGRSPYPPKIALGATIIALIELFFGLQDKYSGSEFITMFFFVGTIVCFGYLLEINFVNK
Ga0130032_1076492	Ga0130032_10764922	F007265	MISPYNVVPGTDIIHSTTDVYELCDEAEGITYRVELQADNGGVSITYTETKIDEKSKLFNEYMSIANKELAVVIAKRILEIYQVK*
Ga0130032_1077484	Ga0130032_10774842	F073313	MSMLRHLCHWLTGRGQRIPVSEFVPPTHPLRQWADTCPWAAWIRAIEASFA
Ga0130032_1080306	Ga0130032_10803062	F015987	MTQITSTNLDKLNTLQLYEHYAALERSLPLLTPESQDVARAELEACANIRSEKVDRIYYAMAAHEDALERIKKESELVTQAKRRHESQLKSLKSLLSWLR
Ga0130032_1081319	Ga0130032_10813191	F037632	MTKIIVEFSGWVECDNDKVMFQYIGEKLNTPLNITGTEWLKLSQDEQDDYILEDCVHAQETAKDGSLEVLDVIVED
Ga0130032_1081512	Ga0130032_10815121	F014004	MTTLLLHVTEVQFAFDEEDFAPEEQQSVVDSVVGNTYAVEVDDNEDAEDALVEAVTDATGWCVNWLTYREVSNN*
Ga0130032_1084954	Ga0130032_10849541	F004573	HRNRSSIVMPDDIDNPQPLPENPATVAELLPHLPLPYEYAKQWACVFSEELADRLVEVQESLGGLQFRVTPIALTDGRFMIRGAILSETAANGLYGLPFSLLDASRFDEVAILPWADAMALRPQPDPVDP*
Ga0130032_1089986	Ga0130032_10899862	F005382	MVQRGESFTFLFPMDKTAKIKAFIFAAGSSIISVQFVKANGEPRSLQFNPRDTQEIKGTGHALKKASIIRCRDFTIARNEGEGAWRSFDCERVTSIKAKGNVLTF*
Ga0130032_1097398	Ga0130032_10973981	F073267	ADAGYVGPYTEPAYDAATEQLLWVDGAYVIEALPPPIPTPRWVDFSAAIMAMPAINVMLGAVLQAAPGLYGGMVVGLQNASEGDSRVFLNSWHAAIAMTLVTEELITTVQGVAGEFDLPAVFIEALAPPIISN*
Ga0130032_1097925	Ga0130032_10979251	F058114	HLYDVLLRNNLQVKQSVMNKIDGEIIADEIFDLLGDLECLDTYLNDEWQDKLWYDDQEDEHTIAVKRNRDLWNRQTIAELKTLIAKLEAQ*