3300009830: Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 07 mira

Overview

Basic Information

• IMG/M Taxon OID: 3300009830
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114530 | Gp0149120 | Ga0131845
• Sample Name: Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 07 mira
• Sequencing Status: Permanent Draft
• Sequencing Center: Center for Advanced Technologies in Genomics, Sao Paulo University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 74945241
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
Not Available	5

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Compost Microbial Communities From Sao Paulo Zoo, Brazil
• Type: Engineered
• Taxonomy: Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Sao Paulo Zoo, Brazil
• Coordinates
  • Lat. (^o): -23.651072
  • Long. (^o): -46.620675
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059782	Metagenome	133	Y
F078430	Metagenome	116	N
F088555	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0131845_104884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2577
Ga0131845_107031	Not Available	2006
Ga0131845_117111	Not Available	1070
Ga0131845_127074	Not Available	811
Ga0131845_132203	Not Available	734
Ga0131845_153867	Not Available	517

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0131845_104884	Ga0131845_1048848	F059782	MRVEFNVARGRAVQGRGSQLAAFSVLLDIESEQLSVMERAELAQRLTARFAQAIAEEFGGEEIEVRRPRE*
Ga0131845_107031	Ga0131845_1070312	F078430	VEGAALMATMLGGVVLPRVYVQESEPDWAGKLIRRWTLRTRPLTWEQYAAIEQMVREVGIARTIERAVDGTPHALGASQVALVLDEGGGRTTTAIVYITAFRVVRPLSLPQRREIELQLEEA*
Ga0131845_117111	Ga0131845_1171112	F078430	VEGAALMATMLGGVVLPRVYVQESEPDWAGKLIRRWTLRTRPLTWEQYAAIEQMVREVGIARSIERAVDGTPHVLGASQVSFVLDEGGGRTTTAMVYITAYRVVRPLSLPQRREIEXQLEEA*
Ga0131845_127074	Ga0131845_1270742	F088555	MAIRMYFDETVSLLVRDDISPTLGSPDTYEGPAEGGSVERKLYLYSDNFQRTYSNVQITALNTDDDVQIHYALDQGGQPGTYQTTLQLPDGDYQTPVPIWVKVTFAPVTEPILRTDLRHWLQWLEAIAG*
Ga0131845_132203	Ga0131845_1322032	F059782	VLGSDVVRVEFETARGRVIPGTGGQVATFFVALEIWSEQLTGPERAELTHRLSTRIMEAIAEEYGGEEIEIRRSRE*
Ga0131845_153867	Ga0131845_1538671	F078430	MLGGVVLPRVYVQESEPDWAGKPIRRWTLRTRPLTWEQYAAIEQMVRTVGVARTIERAVDGTPHVVGASQVALVLDEGGGRVTTAHVYITSFRVSRPLSLPDRREVELELEEA*