3300009722: Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_241_18m (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300009722
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110190 | Gp0141784 | Ga0123378
• Sample Name: Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_241_18m (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9088110
• Sequencing Scaffolds: 21
• Novel Protein Genes: 23
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	11
All Organisms → cellular organisms → Eukaryota → Sar	2
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Goniodomataceae → Pyrodinium → Pyrodinium bahamense	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Peridiniales → Endodiniaceae → Brandtodinium → Brandtodinium nutricula	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Louisana Shelf, Hypoxic Zone, Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.8679
  • Long. (^o): -90.4764
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000100	Metagenome / Metatranscriptome	2281	Y
F000491	Metatranscriptome	1079	Y
F000981	Metatranscriptome	814	Y
F002457	Metagenome / Metatranscriptome	557	Y
F002556	Metagenome / Metatranscriptome	548	Y
F008029	Metagenome / Metatranscriptome	340	N
F010768	Metagenome / Metatranscriptome	299	Y
F012639	Metagenome / Metatranscriptome	279	Y
F013645	Metagenome / Metatranscriptome	269	Y
F015413	Metagenome / Metatranscriptome	255	Y
F019841	Metagenome / Metatranscriptome	227	Y
F021393	Metagenome / Metatranscriptome	219	N
F029117	Metatranscriptome	189	Y
F030135	Metagenome / Metatranscriptome	186	Y
F040115	Metatranscriptome	162	Y
F044287	Metatranscriptome	154	N
F052646	Metagenome / Metatranscriptome	142	Y
F056157	Metagenome / Metatranscriptome	138	N
F066686	Metagenome / Metatranscriptome	126	Y
F091895	Metagenome / Metatranscriptome	107	Y
F101069	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0123378_101463	Not Available	910
Ga0123378_101508	Not Available	521
Ga0123378_101989	Not Available	563
Ga0123378_104743	All Organisms → cellular organisms → Eukaryota → Sar	518
Ga0123378_105087	All Organisms → cellular organisms → Eukaryota → Sar	962
Ga0123378_105307	Not Available	610
Ga0123378_105689	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	714
Ga0123378_106371	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales	888
Ga0123378_106934	Not Available	1347
Ga0123378_109901	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Goniodomataceae → Pyrodinium → Pyrodinium bahamense	889
Ga0123378_111043	Not Available	527
Ga0123378_111402	Not Available	573
Ga0123378_111544	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712	787
Ga0123378_111769	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	859
Ga0123378_114083	All Organisms → cellular organisms → Bacteria	595
Ga0123378_116137	Not Available	685
Ga0123378_116139	Not Available	653
Ga0123378_116264	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	578
Ga0123378_118356	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Peridiniales → Endodiniaceae → Brandtodinium → Brandtodinium nutricula	538
Ga0123378_118403	Not Available	510
Ga0123378_118620	Not Available	693

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0123378_101463	Ga0123378_1014631	F000491	LLLWCLRIMLAPVRSAARPAVRTFSASPWGTDHWRHDKQAFKAWAKEASEPGSSKAKRELYGFLALSFGDVDTDKDGLINAEQFDQLLAEVAALPRRYGLAPLDVGDAVSRAVNHKILFDSLDTKNGPARGVLGLDQFIEWAYDHVVTHVPKVPAKDVGLYHVEDYSEEEYIGFVEKAVNNPGSYEHASFYNFILNCFVEADEQCQGRITYDQFDKLLSRAATVPRHFGLAPPESSTEARKKMFDELELQRGGKGTGYVTARTFWEWTVVHVKGMIELQKAGKGWRENH*
Ga0123378_101508	Ga0123378_1015081	F000100	EMLEKLLDKFIAERTTLEKEEMNAKHAYDMLMQDLKAQLAQATQDRDEKAAFKAETLQSKADAKGDLEDTTSTRDADQTYLNDLTATCEQKATDFESRQQLRADELEAIEKAIEIISSNAVSGNADKHLPGFVQTSFAQLRADSSSANQARVAAYLQARADKLGSRVLSALAV
Ga0123378_101989	Ga0123378_1019891	F000981	LINAEQFDQLLAEVAALPRRYGLAPLDVGDAVSRAVNHKILFDSLDTKNGPARGVLGLDQFIEWAYDHVVTHVPKVPAKDVGLYHVEDYSEEEYIGFVEKAVNNPGSYEHASFYNFILNCFVEADEQCQGRITYDQFDKLLTRAATVPRHFGLAPPESSVEARKKMFDELELQRGGKGTGYVTARTF
Ga0123378_104628	Ga0123378_1046281	F002457	SIEKRTAARKAMFDAVDSKQGAARGWIGAAQFTDWATTHIAGKIAEIDTASEVDFYHVANYSEADFLKAIEVAVTNKNSREYASLYEFLLTAFVETDATCRGEITYAEFNKLIERAAAVPRTFGLAPPDGTVEARKAIFESMDDTKTGLITFRKFLEWTVTHTAGKVEAHKAGKGYKK
Ga0123378_104743	Ga0123378_1047431	F091895	KATAEGDLAVTSKDLAEDIKALADLHHNCMTKASDYEAETKSRGEELKALATAKKIIKETTGGAADQSYGLDQVSFMQVSSDSENRAVRFVRQLAKHQHSSVLAQLASRMSSTIRFSAGNKDDIFAKVKGLIQDMIEKLEAEAEADATKKAYCDKELAETNQKKDDKNAEIE
Ga0123378_105087	Ga0123378_1050872	F010768	MKEVLNGGYNVHPVPPPNSEIKERIRKRYEGERIKIEKLFTLGYTTS
Ga0123378_105307	Ga0123378_1053071	F101069	EKTMKTITIDLTDKQHCMLSRIAKGDKRKVSDLIYLALSRGFEYMYCETALHIDKVDSDYTDKEKKQIAKNKKLEASKGWSDLDYDEKQKRGWEHVCSVMCNYPHDNDFMPGFSESLERNATEGLKENE*
Ga0123378_105689	Ga0123378_1056893	F052646	MKKIILIGLCLLFFLGNKPTTAKQHETTVPLADILLYCNTPEFIRNMAENDYMLGLAASGVVNDDRHRTLISMDLLMNQNNRQWAIIFNYAKGNLSCIIGGNRIKLFSPKN*
Ga0123378_106371	Ga0123378_1063711	F000491	MSVRAFSAASPWGTDHWRHSKAAFKDWTKAAVAPGVSREKREFFGFCALAFGDVDTDKDGFINLEEFDRLLEKVAAVPRRYGLAPVSTMTTLERQMAHKKLFDQLDTKAGPARGVLGLDQFVEWAFDHVISKIGKVPAKDVGLYQVQDYSEEEYIGFVERAVNNPGSYEHASFYNFILNCFVEADEQCEGRITYDQFDKLLTRAAVVPRHFGLAPPESSTEARKKMFDQLELVRGDKKSGFVTARTFWEWTVVHVKGMIELQKAGKGWRENH*
Ga0123378_106934	Ga0123378_1069341	F021393	INSETQVDTVEKSADTLVETEKSFQETVKSGIDTLTEVVQSIAESQLASTQAIEGLTDRVKALETPTDLPLSPKGTVAGDDVGAKVTVPDTYQSNSVQAGLDDDRSGDKKPSSDKGGLKMQQKADDTELVEKSQHTFTTETPRPNAALETVEKSHVDSSQILEDARAGGYDGLSNVAKGILTGKYYTPSPDEVGVY*
Ga0123378_109901	Ga0123378_1099011	F000491	PAMLAPVRSVAQPASVRAFAAASPWGTDHWRHSKAAFKDWTKAAVAPGVSREKREFFGFCALAFGDVDTNKDGFINLEEFDRLLETVAAVPRRYGLAPVSTASPLERQMAHKKLFDQLDTKAGPARGVLGLDQFVEWAFDHVISKIGKVPAKDVGLYQVQDYTEEEYIGFVERAVNNPGSYEHASFYNFILNCFVEADEQCEGRITYDQFDKLLTRAAVVPRHFGLAPPESSTEARKKMFDQLELVRGDKKTGYVTARTFWEWTVVHVKGMIELQKAGKGWRENH*
Ga0123378_111043	Ga0123378_1110431	F030135	REELATLSSFTDIWHSTFAGCQFPDAILPGREAFDLVAGPLN*
Ga0123378_111402	Ga0123378_1114021	F044287	EIRLLSVSSNQPSTMLAPVRSIAQPASSRAFAAASPWGTDHWRHSKAAFKDWTKAAVAPGVSREKREFFGFCALAFGDVDVDKDGFINLEEFDRLLESVAAVPRRYGLAPVSTVSTLERQMAHKKLFDQLDTKAGPARGVLGLDQFVEWAFDHVISKIGKVPAKDVGLYQVQDYTEEEYIGFVERAVNNP
Ga0123378_111544	Ga0123378_1115441	F019841	MFSILESVAFDTGYAGSNGLEPQAWVNGNGTSYIYFGSGEFDGQGSGHDFYGTLYMPPSGYVNSCDGGRSHTYCDYRQE*
Ga0123378_111769	Ga0123378_1117691	F012639	VVKMSANNSGIVLTCSAVFAANAPVATVISATLQTSPTVAAVTELQVPLTENWIATDMYILAAAGAGTPTAIDPQISLDKNRGRQLVETVPLSAMLITNNTRPRFSPQPIGFEGGSIIRSFATSTVV
Ga0123378_111769	Ga0123378_1117692	F015413	MESSELEKQVNDLLNTKFEQPEFEQILPKGILGKDMLIGAAGTALSVQMGNLVGKFLPLGQLPAGTSAILSGILLQKLGGKSGNLKKLSEGVIQGGIATAMTPFLSGLVPTSFQQEEKVEQTTEAINPAIQGVMW*
Ga0123378_114083	Ga0123378_1140831	F008029	KTLNLVGLKELSELLDVSYDTLKVWKNRNRLPDPFQVISGTPVWDWDESEEDFRSIQKNENSGRPRKPKISIAGGLVEIDLNENKKDKDGNVSIRVMGKSFVDIQTESAESNSKSKNVSIRVLGKKVVDINTDDFIEVDKEDKSSENS*
Ga0123378_116137	Ga0123378_1161371	F029117	MKSLIAAACLLLQSDATVEETSLMQGLVARRGQISPESTSRKDATAKLMETATKMMKNGATPDVITFIETTITEVNRDILGVIVDEHNEDQRLIDDLLARFDAAIAAMEECAASVRQQHTDREAASEHHQICRSEEAISCARSRKCEDELEELWRIVEIEEREMREIHWAIHGEWCVGPDPPQPNLEDPFRWQLAYHSEGEETSQSTEDYPLI
Ga0123378_116139	Ga0123378_1161391	F002556	KINAAEFDGLCEDVASLPRRFGLAPSWEKEYGTVERRTASRKAMFDMLDLRQGPPRGWIGLEQFVNWATDHLITKVATIDIGADVDYYHIEQYGEHQYLSHLEEAVTDKNSRAHASLYEFLLAIFTECDSRSTGVLTFAEFDNLLSRAAEVPRTFGLAPPEASKEVRKQFFDSMEDKQMGGVTFRLLLAWTIEHSKGKIALQKSGKGYKK*
Ga0123378_116264	Ga0123378_1162642	F013645	LGTAFNIAYWHRKYHSGTICKGVSNAQASNALSGWEREETPK*
Ga0123378_118356	Ga0123378_1183561	F040115	GKRVLWMLNIQVGTQSISPLLWAIETGSLDAAKAMIVDLLTIRADRDTYYYGMDTLFERHPDIIKRLCYDAPALLPVLLDGLIWRARLIDKGMRRVNYFVKHLVVNQEGDFSKALEWFCDNDDPKLVCHPVVKLVTDLVFSRVAFRSFLYSKTFFVFTLCVFLTSQSILEHLHEGHQNF
Ga0123378_118403	Ga0123378_1184032	F066686	MQELQDIINNLQARLAIVGGGRIIITSDSVSIRLGEEHENFEVQENETDVEMYNQMWGQ*
Ga0123378_118620	Ga0123378_1186201	F056157	KKLSQDDYWAQQIIRAQSGGKDYIFALVRRKYSEDDIEPTGPGEYIGMKEKKSYPKITDNDPDSDTFGKRIDKPGAEPTGLKMEYEDEFTPANVKKYQSMVGINDFGETIFIYKFKQINVRADKVDEFWKISQDEAYNKYILKEQVIKIEESKSNTRRRVSKKAG*