3300009572: Marine microbial communities associated with Trichodesmium colonies (puff morphology) from Station ALOHA, North Pacific Subtropical Gyre ? SampleE20

Overview

Basic Information

• IMG/M Taxon OID: 3300009572
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0120383 | Gp0147222 | Ga0130020
• Sample Name: Marine microbial communities associated with Trichodesmium colonies (puff morphology) from Station ALOHA, North Pacific Subtropical Gyre ? SampleE20
• Sequencing Status: Permanent Draft
• Sequencing Center: Oregon State University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 467673615
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Lipsvirus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities Associated With Trichodesmium Colonies (Puff Morphology) From Station Aloha, North Pacific Subtropical Gyre
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Pelagic → Unclassified → Marine → Marine Microbial Communities Associated With Trichodesmium Colonies (Puff Morphology) From Station Aloha, North Pacific Subtropical Gyre

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.0
  • Long. (^o): -158.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002093	Metagenome / Metatranscriptome	594	Y
F002490	Metagenome / Metatranscriptome	554	Y
F004764	Metagenome / Metatranscriptome	424	Y
F004772	Metagenome / Metatranscriptome	424	N
F015102	Metagenome / Metatranscriptome	257	Y
F067104	Metagenome / Metatranscriptome	126	Y
F072421	Metagenome	121	Y
F090509	Metagenome	108	Y
F097234	Metagenome	104	N
F101343	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0130020_10045284	Not Available	517
Ga0130020_10127517	Not Available	525
Ga0130020_10224885	Not Available	686
Ga0130020_10459111	Not Available	656
Ga0130020_10640514	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	564
Ga0130020_10774103	Not Available	517
Ga0130020_10799316	Not Available	505
Ga0130020_10821542	Not Available	826
Ga0130020_11043553	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Lipsvirus	519
Ga0130020_11217298	Not Available	680

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0130020_10045284	Ga0130020_100452842	F002093	MAYTGSIPAGGPGNFLTPDRATEQEGVAVDFITVDFISDVSGEITHPLASANTAGLQLAMEAIQHQGVNILGTGNLSNSDTEQTYMVRRDALDTISSTTTVAAIQTAIRALDGLTPDKV
Ga0130020_10127517	Ga0130020_101275172	F067104	MKLTKETLREIIKEVIAETDAHPQIIKKNKEVAHN*
Ga0130020_10224885	Ga0130020_102248851	F002490	LKEVKKEIKEYVRDHYKYYGWYPYDVQVGDVLYSYEEYMDILSMTL*
Ga0130020_10459111	Ga0130020_104591112	F072421	MNDLIESLIHQFKKQRIIRGNIYDNFMFFSYKTLGADK
Ga0130020_10640514	Ga0130020_106405142	F101343	MKSLLIKIGIGVSLGVNLFVFSALLYNLKMYDKRVDENRKFIKDTIIEEVYKQIKFVMPKQSGGVVK*
Ga0130020_10774103	Ga0130020_107741031	F015102	LSTKISNQDGDDYAEDKNAPFDDVTHWVGNLPSKDTDSTKRVTQRSTWRKIKSNILSKELGMETKRKD*
Ga0130020_10799316	Ga0130020_107993162	F004772	MTKNFKIAQNVSSDGEIITGFRYIDTNLTLGDEGTGSDPTPSTNRILAIHTYSTLAGEIVITGSKQITNKTAKGTAIRYRVAAADANDQYIGDMGVGVHGILSVANSGTGTMTPTITLYVG*
Ga0130020_10821542	Ga0130020_108215422	F097234	MTELFLGFAALVFVEQNKEFIHQARENKRAGYVWELDPGFVSKDALAIAFEGNGERTVMWRQKKVVEVRIPLRKPKEMK*
Ga0130020_11043553	Ga0130020_110435534	F004764	MNFSLEQNVDILSAYHVERFTHLRDNEQYQDADAIAQEYICNGEVEDDNYQWLYVN
Ga0130020_11217298	Ga0130020_112172981	F090509	MQLLSRREYNLILRSLDKYELYMNSKEKQLSEDLQDKLYYNLYNPKDGIAQTDTEDNVIRSLNFTS*