Sample 3300009530

Overview

Basic Information
IMG/M Taxon OID	3300009530 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0116874 \| Gp0147197 \| Ga0129361
Sample Name	Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 4m depth; RNA IDBA-UD
Sequencing Status	Permanent Draft
Sequencing Center	Marine Biological Laboratory
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	17587161
Sequencing Scaffolds	8
Novel Protein Genes	12
Associated Families	12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gymnodiniales → Kareniaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater biome → meromictic pond → pond water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Falmouth, Massachusetts
Coordinates	Lat. (^o)	41.548517	Long. (^o)	-70.622961	Alt. (m)	N/A	Depth (m)	4
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000100	Metagenome / Metatranscriptome	2281	Y
F000738	Metatranscriptome	913	Y
F001583	Metagenome / Metatranscriptome	668	Y
F002083	Metatranscriptome	595	Y
F002825	Metagenome / Metatranscriptome	527	Y
F007472	Metagenome / Metatranscriptome	350	N
F013634	Metagenome / Metatranscriptome	269	Y
F015066	Metagenome / Metatranscriptome	257	Y
F048780	Metagenome / Metatranscriptome	147	N
F060572	Metagenome / Metatranscriptome	132	N

Scaffold	Taxonomy	Length	IMG/M Link
Ga0129361_100460	Not Available	1346	Open in IMG/M
Ga0129361_101963	Not Available	806	Open in IMG/M
Ga0129361_102252	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	767	Open in IMG/M
Ga0129361_103053	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	694	Open in IMG/M
Ga0129361_105407	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	575	Open in IMG/M
Ga0129361_105815	Not Available	560	Open in IMG/M
Ga0129361_106705	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	534	Open in IMG/M
Ga0129361_107534	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gymnodiniales → Kareniaceae	513	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0129361_100460

Not Available

1346

Open in IMG/M

Ga0129361_101963

Not Available

806

Open in IMG/M

Ga0129361_102252

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales

767

Open in IMG/M

Ga0129361_103053

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium

694

Open in IMG/M

Ga0129361_105407

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea

575

Open in IMG/M

Ga0129361_105815

Not Available

560

Open in IMG/M

Ga0129361_106705

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

534

Open in IMG/M

Ga0129361_107534

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gymnodiniales → Kareniaceae

513

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0129361_100460	Ga0129361_1004602	F074811	MPTKTRLKTASCPLGKWEAIVKSEDVERIREFLTRDNSLRTVGELTALSQQYLGHGQAGSCGPCNSKLMKELETLVNNADSNS*
Ga0129361_101963	Ga0129361_1019631	F007472	MVYFTYKKLNICTVALLATVFAVLIAAMAVDWYSYKVEFSYTRIAASDSSLASSLYNYTQTTFDMFGQTVNTQVANTKIVKTSQQTYAQLGASSVNQQFKIQQAFVLISLLTAGLLFVAHTLYFFDGFRNKILFFIGITALRTILIIALLIVVASEVIAFLAFLGLSDKVASDSPNCLSGPCQKFSDSVTTQLGQSTLTIGNEASVAVALQQIASWGPTAGWYLVLATIPLTVLARSESTRLNSSHFSSAYA
Ga0129361_102252	Ga0129361_1022522	F100417	MLPVIEALLAGVAVGIINRFLARLEHECPDVSAAHRDDSDASTASSGTVEIPHSH*
Ga0129361_103053	Ga0129361_1030532	F048780	VKEKKTALSTKPLPQALVIIDDFADRYDVMKSAGNVLTTLFIRGRHFGCSCWISSQKLTAISTVARVNFRFLCVWRLRNQKEIVALLEELSAIYPIPTLHEMYEAAVSDEPHSWWYIDLVAKEKQRMFHIRFEHRQIVEEVSPQELLAAAPRPDVDPEPAQQL*
Ga0129361_103232	Ga0129361_1032321	F000100	YDRKQASFAQVSALKNLNLIPADAKKAIDLFLMQDPEGLAVSAPEANAYEFQSSGVIEMLEKLLDKFIDERTTLEKEEMNSKHAYDMLMQDLTAQIAQATQDRDEKAETKAKKLQAKADAEGDLKDTTTTRDADVKYLADLTATCEQKASDFESRQQLRAEEIVAIEKAIEIISSNAVAGNAEKHLPTLVQSDRSSFALLRSDLNMQTQSRVADYLRTRAKELNSR
Ga0129361_104375	Ga0129361_1043751	F002825	YDQEIAKCTDYYSKTCAAMEVCRGQIAAANYIAANSRALILDAQANINRCEVDIPTRKYELKQHLLKCKAELYKMNTRLKIVLGDIAVMTMILEMTDCDKSFLQTQHMSLLHCKDPCTNKTFVTFDHKGLQEKVGQLKSAFSTELMKDAFNDLFEGIESIESTEFLQTGSAQSPININKTQFNNPPVPVTKVPPNPCTDPYAGAP
Ga0129361_105025	Ga0129361_1050251	F000738	LKQMKDTMVKDLADITATEKTSISDYESLMEAKTKEVHSCTKSIETKSARVGELGVSIAEMHNDLDDTSAALLEDKKFLANMDKTCDAKKKEWEEITKARAEETLAIQETIKILNDDEALELFKKTLPTPALLQLTESGRAVKSRALAVLQQGKTTDFRLNLISLALKGKKVSFEKVLTMIDEMVALLKKEQVADD
Ga0129361_105407	Ga0129361_1054071	F001583	FNKFYKTYYIIFTNKHLNTDQLTRLMVLHYFTPYYLYLVKLHVMFCHESDSDSGENVYEDKSGTYVSFYDAFLKEIQDAYTLYVFVYFIIHHFDASTVNYFFFERNISELDEIRFYGVAPHYFRPLMGLLVVSPSHYEGLMMALWFVLLASLPIIYNFYNSSKYYLPIIPMRSEEHTSELQSL
Ga0129361_105815	Ga0129361_1058151	F013634	GALTQSKIDKALAGEKVYTKPKTIFGKLIGGISGRTAAADASASVKTAPISDTVVNALQPQSMNLDPNMRQTFPVTGEVSFGGQATQKTWLPFAIIGGIIAVFYFLFGGKRRRRGGRR*
Ga0129361_106705	Ga0129361_1067051	F015066	LTAEGAEFSSTDTAVTFQEDTVVKFAGAGRLDVELVDRSDPSFLDLYIRELAASYAQKTDAYAANIAAQNSAASTGATIYKSIADGIADSFGVMRFTPNRLLVANTGGEDGIDYSGLLGAVDGSGRPLFAAAVPSNAGGLISQGSTAGTVAGLSLVVDPNYTGNNANAKYALVYPSA
Ga0129361_107534	Ga0129361_1075341	F060572	LAVTVAYSFCSTMHSVVYLLFGLAAASGAREWEIANIARNAKGEISDAELGLLNLKNAMQDPSLLKEMAESLRRPEGRGELVKMMANPKFQEQAKNVVDDMRARGISANFLNPASYAKKQDSSKTLQTLLLALNPVAATRSTAASRPFCARRVGCDAISCPSPNHCCHRL
Ga0129361_107672	Ga0129361_1076721	F002083	VKTRNEELLALADTIKILNDDDSLELFKKTLPSSSFMQLKVSSTTLRANALALIRSVQSSAKFDRHHLDFIALAIQGKKIGFDKVIKMIDEMVITLKTEQTDDDNKKEYCGKELDQADDSKKSLEKSISDLDATIADTKEAIASLEADIEALQSSIKALDKAVAEATEQR

Scaffold ID

Protein ID

Family

Sequence

Ga0129361_100460

Ga0129361_1004602

F074811

MPTKTRLKTASCPLGKWEAIVKSEDVERIREFLTRDNSLRTVGELTALSQQYLGHGQAGSCGPCNSKLMKELETLVNNADSNS*

Ga0129361_101963

Ga0129361_1019631

F007472

MVYFTYKKLNICTVALLATVFAVLIAAMAVDWYSYKVEFSYTRIAASDSSLASSLYNYTQTTFDMFGQTVNTQVANTKIVKTSQQTYAQLGASSVNQQFKIQQAFVLISLLTAGLLFVAHTLYFFDGFRNKILFFIGITALRTILIIALLIVVASEVIAFLAFLGLSDKVASDSPNCLSGPCQKFSDSVTTQLGQSTLTIGNEASVAVALQQIASWGPTAGWYLVLATIPLTVLARSESTRLNSSHFSSAYA

Ga0129361_102252

Ga0129361_1022522

F100417

MLPVIEALLAGVAVGIINRFLARLEHECPDVSAAHRDDSDASTASSGTVEIPHSH*

Ga0129361_103053

Ga0129361_1030532

F048780

VKEKKTALSTKPLPQALVIIDDFADRYDVMKSAGNVLTTLFIRGRHFGCSCWISSQKLTAISTVARVNFRFLCVWRLRNQKEIVALLEELSAIYPIPTLHEMYEAAVSDEPHSWWYIDLVAKEKQRMFHIRFEHRQIVEEVSPQELLAAAPRPDVDPEPAQQL*

Ga0129361_103232

Ga0129361_1032321

F000100

YDRKQASFAQVSALKNLNLIPADAKKAIDLFLMQDPEGLAVSAPEANAYEFQSSGVIEMLEKLLDKFIDERTTLEKEEMNSKHAYDMLMQDLTAQIAQATQDRDEKAETKAKKLQAKADAEGDLKDTTTTRDADVKYLADLTATCEQKASDFESRQQLRAEEIVAIEKAIEIISSNAVAGNAEKHLPTLVQSDRSSFALLRSDLNMQTQSRVADYLRTRAKELNSR

Ga0129361_104375

Ga0129361_1043751

F002825

YDQEIAKCTDYYSKTCAAMEVCRGQIAAANYIAANSRALILDAQANINRCEVDIPTRKYELKQHLLKCKAELYKMNTRLKIVLGDIAVMTMILEMTDCDKSFLQTQHMSLLHCKDPCTNKTFVTFDHKGLQEKVGQLKSAFSTELMKDAFNDLFEGIESIESTEFLQTGSAQSPININKTQFNNPPVPVTKVPPNPCTDPYAGAP

Ga0129361_105025

Ga0129361_1050251

F000738

LKQMKDTMVKDLADITATEKTSISDYESLMEAKTKEVHSCTKSIETKSARVGELGVSIAEMHNDLDDTSAALLEDKKFLANMDKTCDAKKKEWEEITKARAEETLAIQETIKILNDDEALELFKKTLPTPALLQLTESGRAVKSRALAVLQQGKTTDFRLNLISLALKGKKVSFEKVLTMIDEMVALLKKEQVADD

Ga0129361_105407

Ga0129361_1054071

F001583

FNKFYKTYYIIFTNKHLNTDQLTRLMVLHYFTP*YYLYLVKLHVMFCHES*DSDSGENVYEDKSGTYVS*FYDAFLKEIQDA*Y*TLYVFVYFIIHHFDASTVNYFFFER*NISELDEIRFYGVAPH*YFRPLMGLLVVSPSHYEGLM*MALWFVLLASLPIIYNFYNSSKYYLPIIPMRSEEHTSELQSL

Ga0129361_105815

Ga0129361_1058151

F013634

GALTQSKIDKALAGEKVYTKPKTIFGKLIGGISGRTAAADASASVKTAPISDTVVNALQPQSMNLDPNMRQTFPVTGEVSFGGQATQKTWLPFAIIGGIIAVFYFLFGGKRRRRGGRR*

Ga0129361_106705

Ga0129361_1067051

F015066

LTAEGAEFSSTDTAVTFQEDTVVKFAGAGRLDVELVDRSDPSFLDLYIRELAASYAQKTDAYAANIAAQNSAASTGATIYKSIADGIADSFGVMRFTPNRLLVANTGGEDGIDYSGLLGAVDGSGRPLFAAAVPSNAGGLISQGSTAGTVAGLSLVVDPNYTGNNANAKYALVYPSA

Ga0129361_107534

Ga0129361_1075341

F060572

LAVTVAYSFCSTMHSVVYLLFGLAAASGAREWEIANIARNAKGEISDAELGLLNLKNAMQDPSLLKEMAESLRRPEGRGELVKMMANPKFQEQAKNVVDDMRARGISANFLNPASYAKKQDSSKTLQTLLLALNPVAATRSTAASRPFCARRVGCDAISCPSPNHCCHRL

Ga0129361_107672

Ga0129361_1076721

F002083

VKTRNEELLALADTIKILNDDDSLELFKKTLPSSSFMQLKVSSTTLRANALALIRSVQSSAKFDRHHLDFIALAIQGKKIGFDKVIKMIDEMVITLKTEQTDDDNKKEYCGKELDQADDSKKSLEKSISDLDATIADTKEAIASLEADIEALQSSIKALDKAVAEATEQR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300009530: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 4m depth; RNA IDBA-UD

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences