3300009404: Microbial communities of water from Amazon river, Brazil - RCM6

Overview

Basic Information

• IMG/M Taxon OID: 3300009404
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117984 | Gp0126442 | Ga0103853
• Sample Name: Microbial communities of water from Amazon river, Brazil - RCM6
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Georgia
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 131264481
• Sequencing Scaffolds: 46
• Novel Protein Genes: 50
• Associated Families: 47

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Filimonas → unclassified Filimonas → Filimonas sp.	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	2
Not Available	24
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	2
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater river biome → river → river water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Amazon river
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000344	Metagenome / Metatranscriptome	1257	Y
F001024	Metagenome / Metatranscriptome	803	Y
F001219	Metagenome / Metatranscriptome	744	Y
F001293	Metagenome / Metatranscriptome	729	Y
F001506	Metagenome / Metatranscriptome	681	Y
F002501	Metagenome / Metatranscriptome	553	Y
F003081	Metagenome / Metatranscriptome	508	Y
F003495	Metagenome / Metatranscriptome	483	Y
F003643	Metagenome / Metatranscriptome	475	N
F004153	Metagenome / Metatranscriptome	450	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103853_1000056	All Organisms → cellular organisms → Bacteria	6551
Ga0103853_1000080	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Filimonas → unclassified Filimonas → Filimonas sp.	5793
Ga0103853_1000704	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2530
Ga0103853_1004092	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1261
Ga0103853_1004653	Not Available	1198
Ga0103853_1005590	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1115
Ga0103853_1005601	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria	1114
Ga0103853_1005937	Not Available	1090
Ga0103853_1005958	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	1088
Ga0103853_1007466	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	997

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103853_1000056	Ga0103853_10000561	F068923	QGNPADFWRSFGSLADRDPANAWRYLNQASANPEVFRQKLLVME*
Ga0103853_1000080	Ga0103853_10000801	F086675	MKRIIFSALALVGGLNAFAQCPNTTGNYEYSITNDAKNIYIKCRNTTGTIRSSYVNPAIDGNFVGLVFGVKWSAQSDITLYRNSSEAPFNITTSAGILEKGGFKFQSYGDPADALPKLSKEFMSGEWNLIATIPYTGRLANGDKFELTECGF
Ga0103853_1000704	Ga0103853_10007046	F028070	MAKISYDIGMAKAVRQLKQPVKGLKMDVVARPNYLALTVYESNIMEYNDGQRADIMEYLLLVRKLIESYGTPCEIEGVKYDSELKRKR*
Ga0103853_1004092	Ga0103853_10040921	F001293	MIQNSLICKLINVQAKVKENNEENIKNCDEISKLTKALPKDTAALDKRKVLAKVNSQGSGR*
Ga0103853_1004653	Ga0103853_10046531	F030134	LSLNRRKTGWILSNNVLNSFRTKSTNNKDKIQPVLRRFKLRSCNLLIVEQTNLKSGYSFSERIIQHRGSS*
Ga0103853_1005590	Ga0103853_10055902	F002501	MHCQKCGGRVFIDRVFSQKLHMELFCIGCGKRWMLNKDTNGLGRWLERLEIIHQKDLSISF*
Ga0103853_1005601	Ga0103853_10056012	F049099	MEDAKRNARLKILRKRSEQNYQKYFWDLCAAGDANNDGNVDMDEWLDVMDGIVKGLKETGEFPEWFEGLNKALWRSVEFLEERNVSSKEFCEMLAIWNVKEMHAEKGFDFITENGAKKMDYPLFSQFMKKFFLCETPGHAMNLGC*
Ga0103853_1005937	Ga0103853_10059373	F023361	MGFMTVINKTGETTNEDETLSLLIEACGVALSKQLPELVADRDALEDALDIPTINRILEVCGGLKMDDPNLLAAAVLAGQN*
Ga0103853_1005958	Ga0103853_10059582	F057919	SFHEINSIFGFVTMLTIMLQLVSGTMLSFSLVPEPMLVPLVRDEEDIEDMYTDDFF*
Ga0103853_1007466	Ga0103853_10074661	F003081	YIPEPGLVIELREEMFNDTRFGVEVFYTHIRGVDTIFVLSYIHILKKIYIKNYVNTEADG
Ga0103853_1007785	Ga0103853_10077851	F056656	ELMNALFLQVKSKGANLQQGDVFRVLKFTRDRADKIETDIQNRVKHNNLACTQDLKNFATKVHENQKWEFTISRHVENNERAATRLRNFVDRTQQEQNDYQALQNIIKASWTNWKNFQTSAVNNLKRVCKSLNRAVSSLRLLEEQGAALVQTGENSQYLTNLNEIRVDFEGNFVNLEGFRPVVVKLLELMSNTSAVNKPLVRRKLIAVFRKITSQVEQRIDEIKAIGERQNAIFGSIIESYKENLLRIQKLLQRLNNESTHLQKRGLALVDSNKQARQITLVSKSIFKTRKTQCLTYAERVSRMNVSIQRTRSIVAQIAEILSESL
Ga0103853_1008557	Ga0103853_10085571	F049099	KYVWDLCEVGDANKDGNIDLDEWLDVMNDIVKYLKDNGKFPEWYEGLHKSLFRANEFLDDRNISASEFANMLLTWSVDETAAERAYNFMIDGGKKKMDYNLFSEFMKQFILNDTQGHPVNLSLDK*
Ga0103853_1010763	Ga0103853_10107631	F091427	MLILGVYYAGISTTISMVNLLITRRALSMPGLRNRRVLLPFVSITILLMLRALSIITPVLGSAMLMLLTDRH*
Ga0103853_1011452	Ga0103853_10114522	F086675	MKRVIFSAFLFSAFGSFAQCPNTTGNYEYSITNDAKNIYIKCRNTTGTIRSSYVNPAIDGNFVGLVFGVKWSAQSDITLYRNSSEAPFNITTSAGILEKGGFKFQSYGDPADALPKLSKEFMSGEWNLIATIPYTGRLANGDKFELTECGF
Ga0103853_1011648	Ga0103853_10116481	F000344	MRPRHPHAAESGVGEHTARESERAQQCATGKERVANAHPQIWPRDRKVP
Ga0103853_1012534	Ga0103853_10125343	F005089	PREQLALENYQQRNGVVDYRLDGVCHHYFAKYDWNCNRDGEICLTCKVSKTVKGSLRYTFQIDGKRIAEKNIWSKFNSLGAFRN*
Ga0103853_1012678	Ga0103853_10126781	F025024	RMEYIAKSDEFLPEYDAQIKTDALALIREIKDEVKEISLRTLIAVSKVRASNKDWKDLATYMLTA*
Ga0103853_1012807	Ga0103853_10128071	F001024	MRPKTPLAVENGVGKLAAKVRRMSARERERGDLPPP
Ga0103853_1013076	Ga0103853_10130761	F060937	REIVEDIAGIIPGDWGKVGTGWLAQPLEVRSASSGNWRQHSPVPLAGVAARHNANEELGGKGRLETAPSRVK*
Ga0103853_1013605	Ga0103853_10136052	F068743	MPWQIKQGAAGCKGFGVVKEGTNELVGCHPSKSRALAHLRASYASENKSKEVKKSILKGDNNG*
Ga0103853_1013978	Ga0103853_10139781	F040495	LATSIEQNELQRKADEAEAIVRFEDRVLNLMHTSTNRERVIAWLMDAEGANGDFEYFCFTQGLPYGYFNVKEVV*
Ga0103853_1016994	Ga0103853_10169941	F003495	MKENNEKRTKNSDEISKLTKAPPKDTAALDKRSVLAKVNSQGSGR
Ga0103853_1017032	Ga0103853_10170321	F082172	MANTVIAVRSSSATGNQPSLGVIANGELSLNYADGILYYKTASNTLGQIRTTQVSGSNQQVQ
Ga0103853_1017613	Ga0103853_10176131	F005478	DDYDLDYTFSNDYNLDEDSYYEHAALDLDEDYARDGQDYQDLAYRHYA*
Ga0103853_1018437	Ga0103853_10184371	F014494	KYFECSECGAEGKITVKGTDIPVQDIVYCPVCSADIYEEEEFDEEE*
Ga0103853_1018545	Ga0103853_10185451	F049674	YHPIFQGIDAVTS*G*NLVSLSGVFFSYLNFFVNRLVLPFSSVTSVIGFMLLIAIALQLLSGFYLG*YYIPEPGLVIELREEMFNDTRFGAEVFYMHVRGVDTIFVLSYMHILKKNLPQKLH*
Ga0103853_1019365	Ga0103853_10193651	F035116	VSWPGSQADGATTGRSELKSLTRQSTGGNALDGPATRPITPLAVENSVGKPAALTAPNVGMGKRAWRTPIPE
Ga0103853_1019646	Ga0103853_10196462	F075875	MANRDTSRIRIKFFAQTTVPTGSGAAPDPVDNTSNVYACVTDGPTWSGFTRGDVETTCSNTTLDAWGNLIKTFRSGKIVDLGTLTFTVDWDVTNTYGGRELAAFMDGRSGVLIVEFPAESGETTGPKINITGYCNKFTPMGTVLSEG
Ga0103853_1019781	Ga0103853_10197811	F069751	VVSGQRIAKSGGCPDASGEDADASHKRVFTWFASWRRKRQLKQAKRPHSKSSCREALDGPATRPTTPLAVENSVGESAVTCVTPNVDIGKESVASS
Ga0103853_1021141	Ga0103853_10211411	F085736	*FYDGMLKEFQDAWY*TLLVFMYFIEHHFNPATVSYYFFER*NISELKEIRFYGVAPH*YFRPLMGLLVVSPSHYEGLM*LAL*LVLLAILPMTYNFYNSNNSYLPIIPMQSSLLQTFCFMLFMMSMYCASSMLPCGRYYYDPEGGYVGNP*VKFSYQYAYLYMA*IAHHLDIIEHYGYRYTQTYLRKTHTFYLICHRRFKKISKLKI*
Ga0103853_1022234	Ga0103853_10222341	F085203	NGLKNIPKNALKTWRNYVQAVKDKKLYDGARSAKLLNSLERIQRRTLKESHERIRGLIFASPAVIAVLKRMDGLLKRKPKQAFDRWRKYVTAVNNKEVLDGVKSRELKAILDKVARRTLRDATERILGDGSKVKGAIKKIFSALQRMPKVALEKWRKYMEGLKNKSFFDNIRSLKVKSALEGIAKRTMRDASQRVIGGGNKVKGAMQSLINGLN
Ga0103853_1022459	Ga0103853_10224591	F001506	MNRILYEIRCKCNEEISITKKRKSNRSEGKPLLYPNPAELTSKTFQIKYEKTLSSIAKFLLNSFQNKYLYYAIDDLLYLLNSNLSERDNLLALLYSPVLSLQNNLSINFFDIWIQEIYIHQTVKTNKFLKTNSPTFESS
Ga0103853_1022497	Ga0103853_10224971	F009078	MVHVNKPAQVREGPITDKTGGCNRDAECSGKNVGLQARKGNLSRWKVTGGADFTTKPIRLTGMRKGSVFVRGVAPKGSYAV*
Ga0103853_1023553	Ga0103853_10235532	F024036	FYGVAPH*YFRPLMGLLVISPTHYEGLM*MGLFFILLTFLPIIYN*YNVSNKHVPTIPMQNSLLQTGAFVIFMFSLYCSASMLPCGRYYYEPAGGYVGNP*VKFSYQYIYLYMA*FIHHLDLIDHYIFQFFQTFVRKSTTFYKHNTDILRNSVSTFANYSNLKKSNKI*
Ga0103853_1025001	Ga0103853_10250012	F004153	KIVVNNQTGEAAGWMFPHTAPYPNLGNDLTKFRMPIQQIEQQAGVAYALPAGTKELAPGAEWKVDFGALTNAKRAKCGANASAD*
Ga0103853_1025939	Ga0103853_10259391	F001219	LFLNPISKQLDDRAEFINFTLRKSTILLTFGYEKLSECIGLLTEEVSEMNRQLKLTRNYTNSHFEEEVASVQQQNAKLLSKLKGDLSIKSAYLFSNVTRELISLTDTFFAKKFQS*
Ga0103853_1027887	Ga0103853_10278871	F004925	VDERKSLVVLRMIPGNWGKAESGWLAWPLSNRIVRFGSGGRIHQFLWPRSRAVSNAKKELGGEER*
Ga0103853_1029833	Ga0103853_10298331	F042356	MVATVHQHGARDSGGFNQPFEAAQRKPPKGGQKEQAHREDHAGAAGRVKNFRVPAMLKTTPLACERKAT*
Ga0103853_1031409	Ga0103853_10314091	F029635	HVSDMLLTSFPPDTNKHSLWKDFSTTNYRHPNFNGVHGSSWAPPLAAVGNGGFKIASPVPKPPSSPKIIAKDLPGPTYSASSFDLPKRRDIVQITIPNSRMKTVQYVTDPSKHFKPIKTGTYYHGIEQKIQKKSFGLFRFISPDQINSVKNDALTAATSAENKAAQLQGQITKNPFATTMIIPIVT
Ga0103853_1031708	Ga0103853_10317081	F058438	AEQPEARAKEPLSPVFDSQLDTMVPSGRALTGKILPTERAALAPA*
Ga0103853_1034021	Ga0103853_10340211	F014854	NWGKVEPGWLARPLLDRIARFGGGGKIHQFLWPRSHVAGNANRNLAARSDEKPLRVESSSPSRFRAWGNRSYPEGKWLLLCISTGRVTLADSINRLKPPSESHRKVDKRSRRTGKITQARQAA*
Ga0103853_1034189	Ga0103853_10341891	F011154	RAWANRSYPEGIRLLLCISTVGRLWRFLEGGQPNERRRKAGQREPPNREGHAVWAGPVKTFRGVGDVKNDTADLWTKGNLRVKRRDPWHRANALSQAAADPELSGEDAEEKTQTCLDLVRKPVAQPLVQAS*
Ga0103853_1036288	Ga0103853_10362881	F009078	VHVNKPAHSCEGAFTDKTGGCNRDAECMGKNFCLQARKGNLSRRKVTGGADFHAKPIQLTGMRKGSVLVRRVAPKSSNAVLMAVGLRES*
Ga0103853_1036728	Ga0103853_10367281	F039653	TIQIEPTFFYIYPFLVIGITDAVFKLFYQIDLKKLVAYSTVVEMH*
Ga0103853_1036951	Ga0103853_10369511	F008361	VEELTNIELSEARKELEKATLAVENAETSKSRLDASVELKKATARLEAINYLS*
Ga0103853_1037036	Ga0103853_10370362	F003643	MKKDLNNDGKVTMQEQILAAMASYGRAFLSAALALYMTANTNPGDLIKGGIAAVAPVLLKALNPNDSSFGFKSHK*
Ga0103853_1038485	Ga0103853_10384851	F048301	EIPSTKLDKYLEVGYNKSSDRTLTFVPKLTKAVSYVWDISVDKALVKTAQIMINQNAASELQNKLMSPEIKAVMSKVEMLHSYNNNEARELAVAEIESLINTYATRGVMDAGQVEEIEMSIQIILDNHPARADYQSSEEFDQMINEAEARMEHPF*
Ga0103853_1041093	Ga0103853_10410932	F018510	KFSHACLCTSGACIIRKEGKEITIDKNTQPINLVADEWHEIEALEDGTVFINVFAEGKY*
Ga0103853_1041321	Ga0103853_10413211	F089902	KLMDAIWHERNTWADTEQKLVAAIIRKTTEYVRTMTAQKMDNLTVLDKGDMMTLSKEVENL*
Ga0103853_1041405	Ga0103853_10414052	F009426	KSTAMTMKVNKDLKLSLDMIVGETPYSIILFMTTSPCVISVGSARETLFEGKADYCMNVCE*