Sample 3300009356

Basic Information
IMG/M Taxon OID	3300009356 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117984 \| Gp0126424 \| Ga0103835
Sample Name	Microbial communities of water from the North Atlantic ocean - ACM16
Sequencing Status	Permanent Draft
Sequencing Center	University of Georgia
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300009356 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0117984 | Gp0126424 | Ga0103835

Sample Name

Microbial communities of water from the North Atlantic ocean - ACM16

Sequencing Status

Permanent Draft

Sequencing Center

University of Georgia

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	66712277
Sequencing Scaffolds	23
Novel Protein Genes	30
Associated Families	24

Dataset Contents

Total Genome Size

66712277

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses → Predicted Viral	1
Not Available	11
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Dictyochophyceae	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium TMED212	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → Viruses → Predicted Viral

Not Available

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Dictyochophyceae

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium TMED212

Ecosystem Assignment (GOLD)
Name	Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Ecosystem Assignment (GOLD)

Name

Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → surface water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → surface water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	North Pacific Ocean
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

North Pacific Ocean

Coordinates

Lat. (^o)

N/A

Long. (^o)

N/A

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F000055	Metagenome / Metatranscriptome	3096	Y
F000075	Metagenome / Metatranscriptome	2622	Y
F000237	Metagenome / Metatranscriptome	1498	Y
F003081	Metagenome / Metatranscriptome	508	Y
F005505	Metagenome / Metatranscriptome	398	Y
F005911	Metagenome / Metatranscriptome	386	Y
F008031	Metagenome / Metatranscriptome	340	Y
F009522	Metagenome / Metatranscriptome	316	Y
F014853	Metatranscriptome	259	Y
F024767	Metagenome / Metatranscriptome	204	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0103835_1001359	All Organisms → cellular organisms → Bacteria → Proteobacteria	1309	Open in IMG/M
Ga0103835_1001960	All Organisms → Viruses → Predicted Viral	1158	Open in IMG/M
Ga0103835_1003158	Not Available	983	Open in IMG/M
Ga0103835_1003478	Not Available	950	Open in IMG/M
Ga0103835_1003733	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	929	Open in IMG/M
Ga0103835_1005242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus	824	Open in IMG/M
Ga0103835_1006656	Not Available	760	Open in IMG/M
Ga0103835_1009152	Not Available	678	Open in IMG/M
Ga0103835_1009790	Not Available	663	Open in IMG/M
Ga0103835_1010517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus	646	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0103835_1001359

All Organisms → cellular organisms → Bacteria → Proteobacteria

1309

Open in IMG/M

Ga0103835_1001960

All Organisms → Viruses → Predicted Viral

1158

Open in IMG/M

Ga0103835_1003158

Not Available

983

Open in IMG/M

Ga0103835_1003478

Not Available

950

Open in IMG/M

Ga0103835_1003733

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

929

Open in IMG/M

Ga0103835_1005242

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus

824

Open in IMG/M

Ga0103835_1006656

Not Available

760

Open in IMG/M

Ga0103835_1009152

Not Available

678

Open in IMG/M

Ga0103835_1009790

Not Available

663

Open in IMG/M

Ga0103835_1010517

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus

646

Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103835_1001359	Ga0103835_10013592	F092219	MKKFITALAATFATVVIGSVASATTPTFSVYHEEVLPALVEANAPATFSVYHEEVLPALVAANTPPTFNVVREEILPAMNRAVASMPVTFAEVYGDIVYHEEVVPVADADPFSEHVVGGLGPQLPYDPMRGVDYGFVQALLQQNADPFAEEIVGGLGPQGDIDPFAEEIVGGLGPQPFNAITYSEVFVGGQLHIIPATDVETFSVAGN*
Ga0103835_1001960	Ga0103835_10019602	F008031	MATYKSDAGAILTPGNQINKLSAFNHEGVLGWPGIELFEQIGFVKVTNLSADKASFKSFSITVPSPDRRVSDRVRDDRTSLVVKASAARPAYVYGASIAIAQDTPSGGLPSFPASPITADLGGTSTELLLLGPDNSGSPLGVPSTQLNGLAAASSSLTAANSLFTQGSEDVTTGKFPA
Ga0103835_1002706	Ga0103835_10027061	F085736	MKIDQVLMYLDFMMLFLKEIQDAYVLYVFCYFIIHHFSPGTVNYFFFERNISELDEIRFYGVAPHYFRPLMGLLVVSPSHYEGLMMGLWFVLLAALPIIYNFYNSHNNYLPIIPMQHSYLQTCAFLLFMLSIYCTASMLPCGRYYYAPEGGYVGNPVKFSYQYAYMYLA*IVHHLDLVEHYGFRFAKTFVRTCLKLYDSVKQNFYRKTVT
Ga0103835_1003158	Ga0103835_10031581	F090441	KNLLSNPKILQKGEVWELATLSFLDSLAFGALVTRRAIVGCQFPDAVSYRKNDCDTFRSHSGT*
Ga0103835_1003478	Ga0103835_10034781	F090441	EVWELATLSFPDSLALGALITRRVIVGCQLPDAASYRKNDCDTFRSHSGT*
Ga0103835_1003733	Ga0103835_10037331	F033052	FKINSMEIINEIANILIFINATLFYIFVFGREIKALARLNKMEKILLRVGLSIPSMGALYNVLVGQYPPIPEIIINVGYASLWTWASIFHYNTFVKNGK*
Ga0103835_1005242	Ga0103835_10052423	F064786	RRILIITKRREIDLSNKKYEIIEHKEIQKLVFINLFFITDIDKHVRPKDRKE*
Ga0103835_1006656	Ga0103835_10066561	F005911	ETMCLKDRLLQMLKSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSIKAKIDGADINQARLGGGDEDEIEAPIDDVFHNGVFITLKEMVKKAVIIVSDDPTATARKGYDIGYDLDNSGVLIKFAAADGNVIQPDQGDADDTIVSDVHLFVNLAGTADTDSNAPYVDGTPFYYILMDSNTAGLAASLETIDLTIYATGILATNGGGPQAEVSVVLPQDNE*
Ga0103835_1006695	Ga0103835_10066951	F000237	LMVLHYFVPYYFYLIQMHVLFCHESDSDSGEATYEDRSGSYISFYDAFLKEIQDAYYCLYVFVYFFLHHAEPVTVNFFFFERNIVELDEIRFYGVAPHYFRPLMGILVISPTHYEGLMMGLFFALLAFLPVIYNLYNSFSKFVCIIPMQNSALQTTLFVVFMMSLYCTASMLPCGRYYYEPEGGYVGNPVKFSYQFVYVYLGILHHLDALDHYFFQFSQSFKRRSKALSSRVLTSRN
Ga0103835_1009152	Ga0103835_10091521	F077350	LNLSQIQKTETDPNQPDIQLLLEELEGKLRGALDVLSPSVKAMCDNLKEAASDIRTDKDATKLWGTVNDLQVFLSLVQQICTSVGTQGPKVVEFDNALGDALGTLETVVLDSEDADEVAAFVEKSLIGAFDKWGEAEAELRALTCM*
Ga0103835_1009790	Ga0103835_10097903	F024767	MNHLEFQNRVLLDKTIPAFVRLVASRALTDLRTAEVDAGTIRVESFVFWQLVRWSGAEPIKSGLYTFIRIYDDQSNAIDIQCLNS
Ga0103835_1010517	Ga0103835_10105171	F064357	LAASPGIGVVRESVWVESAADELVIVSLIDGEWSVDGVLVLGGGGQQFWVDSWDSGDFWHFSSFASVTVPVFVSVEVQWVDSSLGPQSI*
Ga0103835_1011877	Ga0103835_10118771	F054056	SVHFLTGFYYQYSGASDTGDLLGLWELLAVVLFLTWALAISVVGYIEGALLWERYETMEAAGTTVTIVQGYKYLALGCVIGIGAWISGLSLGDSAQELLGFFDNYSSKTRNEAREKGTVDYDPDGTAIEYDLLFHFITLLFSYMTISAIAVGGYVFGYIYLGQADTTTSS*
Ga0103835_1012109	Ga0103835_10121091	F005911	QRVAHLYNAYQMGQSIKGKIDGADINQARLGSGTEADIESPVSELFHNGNFITLKEMVKKAVIIVSDDPTATARSGVDTAYDIDNSGVLIKFADADGTVIADGTGGDTIVADVHLFVNLAGTADANTNAPYTAGEPFYYILMDDVTAGFNDATKRTIDLTQFPTGILATNDGGPQAEVSVVLPQDTEE*
Ga0103835_1012211	Ga0103835_10122111	F092219	AASAATLTFNVYHDEVLPALVAANTPPTFNVVREEILPAMNKAVASMPVTFSDVYGDIVYHEEVVPMSAPATFAEVYGDIVYHEEVAPVADADPFAEQIVGGLGPQLPYDPMRGVDYGFVQALLQQNADPFAEQIVGGLGPQGDIDPFAEEIVGGLGPQINFVASN*
Ga0103835_1012376	Ga0103835_10123761	F014853	GGQWNIPEEITDKTGTPCGSSDSVEVGYMQAVLDHLGKSPETYDTKRIFTSGCSMGSAFSGYMGNCLQQWDATQISAFATHSTGLKYKGDGNRLPSNWGECDGCQWWPFAPVKYSDSQGLKACIFDNTGDGDFYKTSQYLAEEWPKLGNPSESHFASGGHCQNIPYSDIVTCLGLGSSLEVAV*
Ga0103835_1012677	Ga0103835_10126771	F068484	THESGIPLMDTNDLTVGDRVSIRTVNDHTYETRTVDYMNFNGEAGDNYFTVSQPFTAKHEKKRIHLNYKGTQSSQECSGRGLCDGSSADCQCFKGYTGVACEIQNALAA*
Ga0103835_1012863	Ga0103835_10128631	F063325	VSDRLFWESTVVMSELLANSMSSWTAGESSEWNNCSMSKDLIHVIDCSLQIQTFASASSLICRLEMSSQIIDSAFGRFGWLCWLS
Ga0103835_1014062	Ga0103835_10140621	F078190	KAGRKAMFDAIDGADGFKPRGKIAMGQFLGWSTTHIFSKVASIKGETGRVAFRHVEDFTKEEYVAYVEEAVNKPDSIASTTLYNYLLTLFVEADVDCKGKISYEQFDGLVEIAAASPRHFGLAPAGSDAAARRMMFDAMDYNKSGYVTFRKFLRFVREHAREKVTEYKAQN*
Ga0103835_1014755	Ga0103835_10147551	F069721	QAMFKLCILALVAVCATAGETDTFYICPPTGMTKHLGNYTAKGFQDGISKYTNKEGMSIYRHNGYWYIGDVRNWPPTTHYRCVSDCPKDEELPPLVQFETNAKKAKDPAPTIQKTPCEA*
Ga0103835_1015202	Ga0103835_10152021	F000055	LLAATKAVEVSTDKSGDWFVDKTPPPTAAGTPSSGFFGADEDDVMNNIFNHYAVPITNAAGQATGTKVLQKDGCQKACAEILLVTKQVSEAKMEAYMAEFFPRTWAKFDINNSGEIDLTESHTFMRSLLGRLNQFVLAPGSLTDLKV*
Ga0103835_1015317	Ga0103835_10153171	F005911	KIDGADINQARLGSGDEDQIEAPINELFHNGNFIKLSEMVKKAVIIVSDDPTATARKGYDIGYDTENSGVLIKFAAADGNVIQPDQGDADDTIVADVHLFVNLAGTADTDANAPYVDGTPFYYILMDATTAGLADSLETINSTIYPTGILATNGGGPQAEVSVVLPQDSED*
Ga0103835_1016035	Ga0103835_10160351	F003081	MFNDTRFGAEVYYMHVRGVDTLMVLSYMHIMKKIYLKNYVTSESDG*
Ga0103835_1016205	Ga0103835_10162051	F009522	MKAMKRVSKFAKGKLAKLVVFRGNKEATVGGLTKASLTKNKNGKIVSKKQSANGKKAYSFIKGWTVAVTKARKALGVKGFLAVKKGTPLYKKAKEFYGQ*
Ga0103835_1017700	Ga0103835_10177001	F070991	GGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0103835_1017734	Ga0103835_10177341	F000075	ALIAVAAASKYDQMNEDELLVSLESTLSSAQRSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0103835_1019061	Ga0103835_10190611	F000075	LLATVAANRYDSMNEDDLLVNLESTLSSALSSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0103835_1019161	Ga0103835_10191611	F005505	LKEFQDGYVMYIFIYFALHHFNGATVNYFFFERNIAEMDEIRYYGVAPHYFRPLMGMLIVCPTHYEGVFLLFYLVLIAALPVIYNIYNSYGKYVSAIPMQNSLLQTTTFILFMMSLYCSASILPCGRYYYEPEGGYVGNPIKFSYQYIYLYLA*ILHHLDVLDHHIYQ
Ga0103835_1020842	Ga0103835_10208421	F033464	IFLSFLLANHEPVHWTIKCNGWKDLASEVRQDQYLDEQSKSDLIGYFSTKVEEECDFEP*
Ga0103835_1021423	Ga0103835_10214231	F005505	ELDEVRFYGVAPHYFRPLMGILVISPTHYEGLMMGLFFGLLSFMPVIYNCYNVFHKYVATIPMQNSLLQTSTFIFFMMSLYCTASMLPCGRYYYDPEGGYVGNPVKISYQFVYLYLGIIHHLDLFDHYIFQFTQTLVRRCSSYNSRTLNSFTSSKDNSSDVF

Showing 1 to 30 of 30 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300009356: Microbial communities of water from the North Atlantic ocean - ACM16

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences