3300009356: Microbial communities of water from the North Atlantic ocean - ACM16

Overview

Basic Information

• IMG/M Taxon OID: 3300009356
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117984 | Gp0126424 | Ga0103835
• Sample Name: Microbial communities of water from the North Atlantic ocean - ACM16
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Georgia
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 66712277
• Sequencing Scaffolds: 23
• Novel Protein Genes: 30
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses → Predicted Viral	1
Not Available	11
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Dictyochophyceae	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium TMED212	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → surface water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000055	Metagenome / Metatranscriptome	3096	Y
F000075	Metagenome / Metatranscriptome	2622	Y
F000237	Metagenome / Metatranscriptome	1498	Y
F003081	Metagenome / Metatranscriptome	508	Y
F005505	Metagenome / Metatranscriptome	398	Y
F005911	Metagenome / Metatranscriptome	386	Y
F008031	Metagenome / Metatranscriptome	340	Y
F009522	Metagenome / Metatranscriptome	316	Y
F014853	Metatranscriptome	259	Y
F024767	Metagenome / Metatranscriptome	204	Y
F033052	Metagenome / Metatranscriptome	178	Y
F033464	Metagenome / Metatranscriptome	177	Y
F054056	Metagenome / Metatranscriptome	140	Y
F063325	Metatranscriptome	129	N
F064357	Metagenome / Metatranscriptome	128	Y
F064786	Metagenome / Metatranscriptome	128	Y
F068484	Metagenome / Metatranscriptome	124	Y
F069721	Metatranscriptome	123	N
F070991	Metagenome / Metatranscriptome	122	N
F077350	Metagenome / Metatranscriptome	117	Y
F078190	Metatranscriptome	116	N
F085736	Metagenome / Metatranscriptome	111	Y
F090441	Metatranscriptome	108	N
F092219	Metagenome / Metatranscriptome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103835_1001359	All Organisms → cellular organisms → Bacteria → Proteobacteria	1309
Ga0103835_1001960	All Organisms → Viruses → Predicted Viral	1158
Ga0103835_1003158	Not Available	983
Ga0103835_1003478	Not Available	950
Ga0103835_1003733	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	929
Ga0103835_1005242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus	824
Ga0103835_1006656	Not Available	760
Ga0103835_1009152	Not Available	678
Ga0103835_1009790	Not Available	663
Ga0103835_1010517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus	646
Ga0103835_1011877	Not Available	618
Ga0103835_1012109	Not Available	614
Ga0103835_1012376	Not Available	609
Ga0103835_1012677	Not Available	604
Ga0103835_1012863	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	601
Ga0103835_1014062	Not Available	583
Ga0103835_1014755	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Dictyochophyceae	572
Ga0103835_1015317	Not Available	565
Ga0103835_1016035	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	556
Ga0103835_1017700	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	537
Ga0103835_1019161	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	522
Ga0103835_1020842	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium TMED212	506
Ga0103835_1021423	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103835_1001359	Ga0103835_10013592	F092219	MKKFITALAATFATVVIGSVASATTPTFSVYHEEVLPALVEANAPATFSVYHEEVLPALVAANTPPTFNVVREEILPAMNRAVASMPVTFAEVYGDIVYHEEVVPVADADPFSEHVVGGLGPQLPYDPMRGVDYGFVQALLQQNADPFAEEIVGGLGPQGDIDPFAEEIVGGLGPQPFNAITYSEVFVGGQLHIIPATDVETFSVAGN*
Ga0103835_1001960	Ga0103835_10019602	F008031	MATYKSDAGAILTPGNQINKLSAFNHEGVLGWPGIELFEQIGFVKVTNLSADKASFKSFSITVPSPDRRVSDRVRDDRTSLVVKASAARPAYVYGASIAIAQDTPSGGLPSFPASPITADLGGTSTELLLLGPDNSGSPLGVPSTQLNGLAAASSSLTAANSLFTQGSEDVTTGKFPA
Ga0103835_1002706	Ga0103835_10027061	F085736	MKIDQVLMYLDFMMLFLKEIQDA*Y*VLYVFCYFIIHHFSPGTVNYFFFER*NISELDEIRFYGVAPH*YFRPLMGLLVVSPSHYEGLM*MGLWFVLLAALPIIYNFYNSHNNYLPIIPMQHSYLQTCAFLLFMLSIYCTASMLPCGRYYYAPEGGYVGNP*VKFSYQYAYMYLA*IVHHLDLVEHYGFRFAKTFVRTCLKLYDSVKQNFYRKTVT
Ga0103835_1003158	Ga0103835_10031581	F090441	KNLLSNPKILQKGEVWELATLSFLDSLAFGALVTRRAIVGCQFPDAVSYRKNDCDTFRSHSGT*
Ga0103835_1003478	Ga0103835_10034781	F090441	EVWELATLSFPDSLALGALITRRVIVGCQLPDAASYRKNDCDTFRSHSGT*
Ga0103835_1003733	Ga0103835_10037331	F033052	FKINSMEIINEIANILIFINATLFYIFVFGREIKALARLNKMEKILLRVGLSIPSMGALYNVLVGQYPPIPEIIINVGYASLWTWASIFHYNTFVKNGK*
Ga0103835_1005242	Ga0103835_10052423	F064786	RRILIIT*KRREIDLSNKKYEIIEHKEIQKLVF*INLFFITDIDKHVRPKDRKE*
Ga0103835_1006656	Ga0103835_10066561	F005911	ETMCLKDRLLQMLKSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSIKAKIDGADINQARLGGGDEDEIEAPIDDVFHNGVFITLKEMVKKAVIIVSDDPTATARKGYDIGYDLDNSGVLIKFAAADGNVIQPDQGDADDTIVSDVHLFVNLAGTADTDSNAPYVDGTPFYYILMDSNTAGLAASLETIDLTIYATGILATNGGGPQAEVSVVLPQDNE*
Ga0103835_1006695	Ga0103835_10066951	F000237	LMVLHYFVP*YYFYLIQMHVLFCHES*DSDSGEATYEDRSGSYIS*FYDAFLKEIQDAYY*CLYVFVYFFLHHAEPVTVNFFFFER*NIVELDEIRFYGVAPH*YFRPLMGILVISPTHYEGLM*MGLFFALLAFLPVIYNLYNSFSKFVCIIPMQNSALQTTLFVVFMMSLYCTASMLPCGRYYYEPEGGYVGNP*VKFSYQFVYVYLG*ILHHLDALDHYFFQFSQSFKRRSKALSSRVLTSRN*
Ga0103835_1009152	Ga0103835_10091521	F077350	LNLSQIQKTETDPNQPDIQLLLEELEGKLRGALDVLSPSVKAMCDNLKEAASDIRTDKDATKLWGTVNDLQVFLSLVQQICTSVGTQGPKVVEFDNALGDALGTLETVVLDSEDADEVAAFVEKSLIGAFDKWGEAEAELRALTCM*
Ga0103835_1009790	Ga0103835_10097903	F024767	MNHLEFQNRVLLDKTIPAFVRLVASRALTDLRTAEVDAGTIRVESFVFWQLVRWSGAEPIKSGLYTFIRIYDDQSNAIDIQCLNS
Ga0103835_1010517	Ga0103835_10105171	F064357	LAASPGIGVVRESVWVESAADELVIVSLIDGEWSVDGVLVLGGGGQQFWVDSWDSGDFWHFSSFASVTVPVFVSVEVQWVDSSLGPQSI*
Ga0103835_1011877	Ga0103835_10118771	F054056	SVHFLTGFYYQYSGASDTGDLLGLWELLAVVLFLTWALAISVVGYIEGALLWERYETMEAAGTTVTIVQGYKYLALGCVIGIGAWISGLSLGDSAQELLGFFDNYSSKTRNEAREKGTVDYDPDGTAIEYDLLFHFITLLFSYMTISAIAVGGYVFGYIYLGQADTTTSS*
Ga0103835_1012109	Ga0103835_10121091	F005911	QRVAHLYNAYQMGQSIKGKIDGADINQARLGSGTEADIESPVSELFHNGNFITLKEMVKKAVIIVSDDPTATARSGVDTAYDIDNSGVLIKFADADGTVIADGTGGDTIVADVHLFVNLAGTADANTNAPYTAGEPFYYILMDDVTAGFNDATKRTIDLTQFPTGILATNDGGPQAEVSVVLPQDTEE*
Ga0103835_1012211	Ga0103835_10122111	F092219	AASAATLTFNVYHDEVLPALVAANTPPTFNVVREEILPAMNKAVASMPVTFSDVYGDIVYHEEVVPMSAPATFAEVYGDIVYHEEVAPVADADPFAEQIVGGLGPQLPYDPMRGVDYGFVQALLQQNADPFAEQIVGGLGPQGDIDPFAEEIVGGLGPQINFVASN*
Ga0103835_1012376	Ga0103835_10123761	F014853	GGQWNIPEEITDKTGTPCGSSDSVEVGYMQAVLDHLGKSPETYDTKRIFTSGCSMGSAFSGYMGNCLQQWDATQISAFATHSTGLKYKGDGNRLPSNWGECDGCQWWPFAPVKYSDSQGLKACIFDNTGDGDFYKTSQYLAEEWPKLGNPSESHFASGGHCQNIPYSDIVTCLGLGSSLEVAV*
Ga0103835_1012677	Ga0103835_10126771	F068484	THESGIPLMDTNDLTVGDRVSIRTVNDHTYETRTVDYMNFNGEAGDNYFTVSQPFTAKHEKKRIHLNYKGTQSSQECSGRGLCDGSSADCQCFKGYTGVACEIQNALAA*
Ga0103835_1012863	Ga0103835_10128631	F063325	VSDRLFWESTVVMSELLANSMSSWTAGESSEWNNCSMSKDLIHVIDCSLQIQTFASASSLICRLEMSSQIIDSAFGRFGWLCWLS
Ga0103835_1014062	Ga0103835_10140621	F078190	KAGRKAMFDAIDGADGFKPRGKIAMGQFLGWSTTHIFSKVASIKGETGRVAFRHVEDFTKEEYVAYVEEAVNKPDSIASTTLYNYLLTLFVEADVDCKGKISYEQFDGLVEIAAASPRHFGLAPAGSDAAARRMMFDAMDYNKSGYVTFRKFLRFVREHAREKVTEYKAQN*
Ga0103835_1014755	Ga0103835_10147551	F069721	QAMFKLCILALVAVCATAGETDTFYICPPTGMTKHLGNYTAKGFQDGISKYTNKEGMSIYRHNGYWYIGDVRNWPPTTHYRCVSDCPKDEELPPLVQFETNAKKAKDPAPTIQKTPCEA*
Ga0103835_1015202	Ga0103835_10152021	F000055	LLAATKAVEVSTDKSGDWFVDKTPPPTAAGTPSSGFFGADEDDVMNNIFNHYAVPITNAAGQATGTKVLQKDGCQKACAEILLVTKQVSEAKMEAYMAEFFPRTWAKFDINNSGEIDLTESHTFMRSLLGRLNQFVLAPGSLTDLKV*
Ga0103835_1015317	Ga0103835_10153171	F005911	KIDGADINQARLGSGDEDQIEAPINELFHNGNFIKLSEMVKKAVIIVSDDPTATARKGYDIGYDTENSGVLIKFAAADGNVIQPDQGDADDTIVADVHLFVNLAGTADTDANAPYVDGTPFYYILMDATTAGLADSLETINSTIYPTGILATNGGGPQAEVSVVLPQDSED*
Ga0103835_1016035	Ga0103835_10160351	F003081	MFNDTRFGAEVYYMHVRGVDTLMVLSYMHIMKKIYLKNYVTSESDG*
Ga0103835_1016205	Ga0103835_10162051	F009522	MKAMKRVSKFAKGKLAKLVVFRGNKEATVGGLTKASLTKNKNGKIVSKKQSANGKKAYSFIKGWTVAVTKARKALGVKGFLAVKKGTPLYKKAKEFYGQ*
Ga0103835_1017700	Ga0103835_10177001	F070991	GGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0103835_1017734	Ga0103835_10177341	F000075	ALIAVAAASKYDQMNEDELLVSLESTLSSAQRSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0103835_1019061	Ga0103835_10190611	F000075	LLATVAANRYDSMNEDDLLVNLESTLSSALSSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0103835_1019161	Ga0103835_10191611	F005505	LKEFQDG*Y*VMYIFIYFALHHFNGATVNYFFFER*NIAEMDEIRYYGVAPH*YFRPLMGMLIVCPTHYEGVF*LLFYLVLIAALPVIYNIYNSYGKYVSAIPMQNSLLQTTTFILFMMSLYCSASILPCGRYYYEPEGGYVGNP*IKFSYQYIYLYLA*ILHHLDVLDHHIYQ
Ga0103835_1020842	Ga0103835_10208421	F033464	IFLSFLLANHEPVHWTIKCNGWKDLASEVRQDQYLDEQSKSDLIGYFSTKVEEECDFEP*
Ga0103835_1021423	Ga0103835_10214231	F005505	ELDEVRFYGVAPH*YFRPLMGILVISPTHYEGLM*MGLFFGLLSFMPVIYNCYNVFHKYVATIPMQNSLLQTSTFIFFMMSLYCTASMLPCGRYYYDPEGGYVGNP*VKISYQFVYLYLG*IIHHLDLFDHYIFQFTQTLVRRCSSYNSRTLNSFTSSKDNSSDVF