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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300009352 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117984 | Gp0126454 | Ga0103865 |
| Sample Name | Microbial communities of water from Amazon river, Brazil - RCM18 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Georgia |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 50112240 |
| Sequencing Scaffolds | 32 |
| Novel Protein Genes | 35 |
| Associated Families | 29 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
| Not Available | 20 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Haemosporida → Plasmodiidae → Plasmodium | 1 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida → Stentoridae → Stentor → Stentor coeruleus | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater river biome → river → river water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Amazon river | |||||||
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000237 | Metagenome / Metatranscriptome | 1498 | Y |
| F000344 | Metagenome / Metatranscriptome | 1257 | Y |
| F001024 | Metagenome / Metatranscriptome | 803 | Y |
| F001583 | Metagenome / Metatranscriptome | 668 | Y |
| F001926 | Metagenome / Metatranscriptome | 616 | Y |
| F002071 | Metagenome / Metatranscriptome | 596 | Y |
| F003081 | Metagenome / Metatranscriptome | 508 | Y |
| F004178 | Metagenome / Metatranscriptome | 449 | Y |
| F004323 | Metagenome / Metatranscriptome | 443 | Y |
| F006424 | Metagenome / Metatranscriptome | 373 | Y |
| F009078 | Metagenome / Metatranscriptome | 323 | Y |
| F014854 | Metagenome / Metatranscriptome | 259 | Y |
| F023129 | Metagenome / Metatranscriptome | 211 | Y |
| F024806 | Metagenome / Metatranscriptome | 204 | Y |
| F025755 | Metagenome / Metatranscriptome | 200 | Y |
| F037234 | Metagenome / Metatranscriptome | 168 | Y |
| F037987 | Metagenome / Metatranscriptome | 167 | Y |
| F039175 | Metagenome / Metatranscriptome | 164 | Y |
| F045132 | Metagenome / Metatranscriptome | 153 | Y |
| F048103 | Metagenome / Metatranscriptome | 148 | Y |
| F049019 | Metagenome / Metatranscriptome | 147 | N |
| F050362 | Metagenome / Metatranscriptome | 145 | Y |
| F051728 | Metagenome / Metatranscriptome | 143 | Y |
| F059886 | Metagenome / Metatranscriptome | 133 | Y |
| F060922 | Metagenome / Metatranscriptome | 132 | Y |
| F064358 | Metagenome / Metatranscriptome | 128 | Y |
| F069733 | Metatranscriptome | 123 | N |
| F069751 | Metagenome / Metatranscriptome | 123 | N |
| F081750 | Metagenome / Metatranscriptome | 114 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0103865_1001400 | All Organisms → cellular organisms → Eukaryota | 1147 | Open in IMG/M |
| Ga0103865_1001727 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1070 | Open in IMG/M |
| Ga0103865_1001871 | Not Available | 1042 | Open in IMG/M |
| Ga0103865_1002398 | Not Available | 956 | Open in IMG/M |
| Ga0103865_1003025 | Not Available | 878 | Open in IMG/M |
| Ga0103865_1003212 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei | 860 | Open in IMG/M |
| Ga0103865_1003387 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 844 | Open in IMG/M |
| Ga0103865_1003400 | Not Available | 843 | Open in IMG/M |
| Ga0103865_1003542 | Not Available | 831 | Open in IMG/M |
| Ga0103865_1003712 | Not Available | 815 | Open in IMG/M |
| Ga0103865_1004392 | Not Available | 764 | Open in IMG/M |
| Ga0103865_1004509 | Not Available | 757 | Open in IMG/M |
| Ga0103865_1004582 | Not Available | 753 | Open in IMG/M |
| Ga0103865_1004645 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia | 748 | Open in IMG/M |
| Ga0103865_1006093 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata | 676 | Open in IMG/M |
| Ga0103865_1006144 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Haemosporida → Plasmodiidae → Plasmodium | 674 | Open in IMG/M |
| Ga0103865_1006437 | Not Available | 662 | Open in IMG/M |
| Ga0103865_1006920 | Not Available | 644 | Open in IMG/M |
| Ga0103865_1007549 | Not Available | 623 | Open in IMG/M |
| Ga0103865_1008102 | Not Available | 607 | Open in IMG/M |
| Ga0103865_1008748 | Not Available | 590 | Open in IMG/M |
| Ga0103865_1008861 | Not Available | 587 | Open in IMG/M |
| Ga0103865_1008879 | Not Available | 587 | Open in IMG/M |
| Ga0103865_1008935 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata | 585 | Open in IMG/M |
| Ga0103865_1008975 | Not Available | 584 | Open in IMG/M |
| Ga0103865_1009876 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae | 563 | Open in IMG/M |
| Ga0103865_1010802 | Not Available | 544 | Open in IMG/M |
| Ga0103865_1010992 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida → Stentoridae → Stentor → Stentor coeruleus | 540 | Open in IMG/M |
| Ga0103865_1011017 | Not Available | 540 | Open in IMG/M |
| Ga0103865_1011451 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 532 | Open in IMG/M |
| Ga0103865_1013161 | Not Available | 506 | Open in IMG/M |
| Ga0103865_1013555 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 500 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0103865_1000753 | Ga0103865_10007531 | F000237 | MVLHYFTP*YYLYLVKLHILFCHES*DTDSGENIYEDKSGTYIS*FYDAMLKEFQDA*Y*TLLVFMYFTEHHFNPSTVNYFFFER*NISELEEIRFYGVAPH*YFRPLMGLLVVSPSHYEGLM*LAL*LVLLAILPITYNFYNSNNNYLPIIPMQSSLLQTGCFMLFMLSIYCASSMLPCGRYYYDPEGGYVGNP*VKFSYQYAYLYMA*IAHHLDLIEHYGYQYTQTYLRKTNTYYLTCHKNYKQSIDTLK* |
| Ga0103865_1001400 | Ga0103865_10014003 | F006424 | VVGTSWVNSVFIRDDFPEFGTDLVTTLSSLDVNDFS |
| Ga0103865_1001727 | Ga0103865_10017272 | F050362 | SGSPLSYGNGQTPTINPGATQQSRLHTNGNQPGYSIDGSEFTTVNPAFQSYNDGVSNILPQPSLLDLNGQTPPQYINNLPG* |
| Ga0103865_1001871 | Ga0103865_10018711 | F049019 | DPGSRLLSDSAASDQKQGSLLVYTHYGSATTNVSDNDTRINITNTHGTASVVVHFFFVAQNCNVADFKTELTQSQTYSFLTSDFDPDQKGYIMAVAENQDGLPIAMNWLIGDLFVKDSTITAAGPISANLGAIAFAALWGNSNNTNPDPDGFWPIPPSAIDGTGVFVTINFGTLYNSLPRTLAVDNIPSLAGGDRALLILANPAHNYITGGSTSLGSTFGLLYDDAEQSQSFQLAPPTSCQSANVLGDSYPRTAPRFSTVIPAGRTGWMKIYRTGEAGFVGSVIVSNIGGRGVNFHGGHNLHHLTLSGTQTATLPVFPFELQTN* |
| Ga0103865_1002398 | Ga0103865_10023982 | F009078 | MVHVNKPAHCRETAITDKTGGCNRDAECSGKNGDLPARKGNRSHWKVTGGADFTAKPTWLSGMRKGSVFVQGVAPKGWYAV* |
| Ga0103865_1003025 | Ga0103865_10030251 | F009078 | MVHVNKPAQPREGSIVDKTGSGNRDAECSGKNADLPARKGNRSQWKVTGGADFTAKPIRLTGMRKGSVMIRGVAPKSCSAVLMAVGLRES* |
| Ga0103865_1003212 | Ga0103865_10032121 | F000344 | MRPIHPHAAESGVGKHTARESESAQACAIGEERVANAHSHHWPRKLPSFQIG |
| Ga0103865_1003335 | Ga0103865_10033351 | F037987 | ISPGSTLRSNRDKWGMGVRHALFPELTFGALFSEAVSFPTPFSTASGVFGLVAGPSGDFHLADFE* |
| Ga0103865_1003387 | Ga0103865_10033872 | F004323 | MPLVGFRRREGRAAPAATFRSPVARDYLSRAFSDVFQAAA |
| Ga0103865_1003400 | Ga0103865_10034001 | F045132 | VLIYSSNPYPLGNCDSPRPETSLSYLTQLGAVSHRTSLPSPFFALTDGARTPPEELVNPASASECVSTRLQRGLVNQPDLAFPRSPGRILETSASELLLTGLRL |
| Ga0103865_1003542 | Ga0103865_10035421 | F060922 | VDERTLKNVSKIIPGDWGMVGPGWLAQPLSNRIAGCGGGGRIHQFL* |
| Ga0103865_1003712 | Ga0103865_10037121 | F060922 | KWLNVSKIIPGDWGKVGSGWLIQPLLNRTARCGSGGRIHQFL* |
| Ga0103865_1004392 | Ga0103865_10043921 | F069751 | VASGQRTAKSGGSPGAGGRDADESHKRVFTWFANRRCKRQLKQAKRPHSKSSVRKVLDGPATRPATPLAVENSVGKLAAN* |
| Ga0103865_1004509 | Ga0103865_10045092 | F009078 | GAIIEKTGGGNSDAGSIGKNVGLQARKGNLSRWKVTGGADFYTKPAQLTGMRKGSVYCPKGCT* |
| Ga0103865_1004582 | Ga0103865_10045822 | F004178 | MRSITSHAAKSGVGEHTARESESAQCMRRERLCGE |
| Ga0103865_1004627 | Ga0103865_10046271 | F000237 | HILFCHES*DTDSGENVYEDKSSTYIS*FYDGMLKEFQDA*Y*TLLVFMYFAEHHFNPATVNYYFFER*NISELKEIRFYGVAPH*YFRPLMGLLVVSPSHYEGLMWLAL*LVLLAILPMTYNFYNSNNYYLPIIPMQSSLLQTSCFMLFMLSMYCASSMLPCGRYYYDPEGGYVGNP*VKFSYQYAYLYMA*IAHHLDLIEHYGYRYTQVYLRKTNTHYIMCHREFRRSIDVMK* |
| Ga0103865_1004645 | Ga0103865_10046451 | F059886 | VTYASGPAFAAWRGEQHQLPLTFPRSPGIIPAVFSAAPFRPLH |
| Ga0103865_1006093 | Ga0103865_10060932 | F003081 | VIELREEMFNDTRFGAEVFYTHIRGVDTIFVLSYMHILKKIYLKNYVNTEADG* |
| Ga0103865_1006144 | Ga0103865_10061441 | F001926 | VKHEDIPETNKPKIRNPVLEGDKLMKEVLNGGYNVHPVPPPNSEIKERIRRRYERKRIKIEKLLTLGYTTSGDP* |
| Ga0103865_1006437 | Ga0103865_10064371 | F001024 | MRPDTPLAVENGVGKSAAKERLMPAWEREHGELPSPNLSPFSRKAGR |
| Ga0103865_1006920 | Ga0103865_10069201 | F002071 | PTLEIGQTFTTEKSGVVGIVKAVDNHPSGVNRVLLDVNGTERWTSVSAN* |
| Ga0103865_1007549 | Ga0103865_10075491 | F048103 | EVGTSIGITRRNSAKNKIIRFYYCVFHYDRILKTERYVNVQVVLLLTLTVPYQGFDHEVV |
| Ga0103865_1008102 | Ga0103865_10081021 | F014854 | KPLVVSRMIPVNWGKVGSGWLARPLLNRIARCGGGGRIHQFLWSRSHAAGNANRNLAMRSDEKPLRVGSSTPSEFRAWGNRSYPEGKWLLLCISTGRMTLADSINRLKPPNESHRKVDKRSRRTGKITQARQAA* |
| Ga0103865_1008748 | Ga0103865_10087481 | F048103 | VGRLIEVGTPIGITRRNIAKHRVIRFYYCVFQYKRVLKTVRYVDVQVVLLLTLIVLYQGFDLEVILKYGNGDISESS* |
| Ga0103865_1008861 | Ga0103865_10088612 | F064358 | MLCYCCGKNKNELHPKKSAIMEGVVVLMCTTCIEAKFEPRWLVVIAGRQKGPEFVRDYVIKRRYIGKIITAEELIV* |
| Ga0103865_1008879 | Ga0103865_10088791 | F025755 | TIGVLSIASLVSTSAFSQITISGYAEVGFITGSADGTRGTVTSKGRGSEFLVTVAGKGKMSNGWEYSAYQNFDTDEVGNGRDVANSNPMTTRAVELSPSKDFKLFYTYDGVYGGEIARTAVPTVTERAVDLTGQSTLAEFIDVTSGTHAVGLEVLNVGPAGRLSVAYAPNLDATQAQSSDRVYAATNYVTGGRNP |
| Ga0103865_1008935 | Ga0103865_10089351 | F037234 | NEYLILDPKPSDLTMIRVIKARMAYRCKDIQRIVVS* |
| Ga0103865_1008975 | Ga0103865_10089751 | F023129 | MKGNLRVERRDPWHRANALPKAAADPALSGQDATSSIQACLDLVRT |
| Ga0103865_1009876 | Ga0103865_10098762 | F001926 | EDIPEVNNPKIRFPVLEGDKLMKEVLNGGYNVHPVPPPNSDIKESIRKRYERERIKIEKLLTLGYTTSGDP* |
| Ga0103865_1010802 | Ga0103865_10108021 | F069733 | MVGRSSFYDCSFPSGLYIPSLHRLSGQSCDWFENRCFLDYPCEQFEKPDLKGVGLLQILIQAFLRLLKFSTRFALYLLIDRSISLPCGFVIKQKIAECRSFVRRIKIFLRISLSRAAFANLYDLASIYLGHPCEQPAQLKLFTKINLNYLASTYLSYPCEQLARLRPFI |
| Ga0103865_1010992 | Ga0103865_10109921 | F051728 | RRTLRDATERILGDGSKVKGAIKKIYSTMQRMPKVALEKWRKYLQGLKNKDFFDNVRSLKVKGCLEGIIKRTTRDASQRIIGGGNKIKGAMQSLINGLNNIPKKALKRWRQTVQDIKDKKLYDNAARSAKLQNSLEKIQRRTMKEAHERVKGLICASPAVKAVIKRMDGLLKRKPKQAF |
| Ga0103865_1011017 | Ga0103865_10110171 | F024806 | MISNFDFNFKNTPTLTLELPFAEHIEELRQRIIHIFWIILLFSLLAFIEVKFLVQLLELP |
| Ga0103865_1011451 | Ga0103865_10114511 | F039175 | AKLPIFPFPLMMLYELADNIDALRIPIETLNREMFKNGFEVVERWKYKCENCGKEFQYAPLVSERPDDQPFEQNQDNAGNAIPKSKANIDQSAMQCDTCGSDKLRRPVPEHRLKLENLMKKSVNGNGQTLEDLSRQLERDLEIADNAYLLLLKSYSISDATGKINPNGTEIKELLRL |
| Ga0103865_1013161 | Ga0103865_10131611 | F001583 | YLYLVKLHILFCHES*DTDSGENILEDKSGTYVS*FYDAMLKEFQDA*Y*TLLVFSYFIEHHFNPSTVNYFFFER*NISELEEIRFYGVAPH*YFRPLMGLLVVSPSHYEGLM*LAL*FVLLAILPMTYNFYNSNNSYLPIVPMQSSKLQTICFMLFMFSVYCASSML |
| Ga0103865_1013555 | Ga0103865_10135551 | F081750 | MGQKVDARIFRLGICKKN*EQKYIEKNNEESSLYLYKTLEIQKYINRIFDLYKIKIHNCKIFYSESSLHVFISFYVTTKTISIISKNLTK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |