3300009340: Microbial communities of water from the North Atlantic ocean - ACM60

Overview

Basic Information

• IMG/M Taxon OID: 3300009340
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117984 | Gp0126427 | Ga0103838
• Sample Name: Microbial communities of water from the North Atlantic ocean - ACM60
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Georgia
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 38393926
• Sequencing Scaffolds: 41
• Novel Protein Genes: 50
• Associated Families: 34

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	9
Not Available	16
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	6
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Tunicata → Appendicularia → Copelata → Oikopleuridae → Oikopleura → Oikopleura dioica	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida	2
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → surface water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000048	Metagenome / Metatranscriptome	3365	Y
F000070	Metagenome / Metatranscriptome	2710	N
F000075	Metagenome / Metatranscriptome	2622	Y
F000147	Metagenome / Metatranscriptome	1917	Y
F000237	Metagenome / Metatranscriptome	1498	Y
F000491	Metatranscriptome	1079	Y
F001583	Metagenome / Metatranscriptome	668	Y
F002297	Metatranscriptome	573	Y
F002556	Metagenome / Metatranscriptome	548	Y
F003009	Metagenome / Metatranscriptome	513	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103838_1000961	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1064
Ga0103838_1001012	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	1045
Ga0103838_1001122	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1009
Ga0103838_1001386	Not Available	949
Ga0103838_1001520	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	919
Ga0103838_1001948	Not Available	842
Ga0103838_1001961	Not Available	840
Ga0103838_1002097	Not Available	820
Ga0103838_1002310	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	792
Ga0103838_1002331	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	788

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103838_1000961	Ga0103838_10009611	F027191	KKNEIEKPLLHSINLVRVVRLLISPNKNKMKIEVSKIMKPAFLLGIAFNIAYWQRKYHSGTICKGVSNPLTSKALSGCEREDIPKCT*
Ga0103838_1001012	Ga0103838_10010121	F003009	VYYPLQGKTIFNYFALLSVAFHDIYSVFGFFVFLIVTNQLISGTMLSFSLILEPMIVPMVREEEDVEDLYIDDFF*
Ga0103838_1001122	Ga0103838_10011221	F003081	MFNDTRFGFEVFHMHVRGVDTLMVLSYMHILKKIYLKNYVTAESDG*
Ga0103838_1001386	Ga0103838_10013861	F090441	WELATLSFLDSLAFGALVTRRAIVGCQFPDAVSYRKNDCDTFRSHSGT*
Ga0103838_1001520	Ga0103838_10015201	F011139	MLPAIYNFYNSTNKYVAAIPMQNSLLQTTFFMLFMMSVYCVSSVLPCGRYYYEPEGGYVGNP*
Ga0103838_1001817	Ga0103838_10018171	F000237	SDLTLTVFANVF*SLLNNIHKSYYIVFTNKHLNVDQLTRFMVLHYFTP*YYLYLVQLHVMFCHES*DTDSGENTLEDKSGTYVS*FYDAFLKEIQDAWF*SQFVFVYFVMHHFHASTVNYHFFER*NISELDEIRFYGVAPH*YFGPLMGILVISPTHYEGLM*MGLFFALLAFLPVIYNLYNSFSKFVCIIPMQNSALQTTLFVVFMMSLYCTASMLPCGRYYYEPEGGYVGNP*VKFSYQFVYVYLG*ILHHLDALDHYFFQFSQSFKRRSKALSSRVLTSRN*
Ga0103838_1001948	Ga0103838_10019481	F030403	EASDDEVWRVDRTAFVSFCKAAAAAEPSQAKREWNGFLSLAFADVDASKTGMIDPDQFDELCEQVARLPRRFGLAPSWEEEYGGSREKRTAARKAMFDAIDSMQGPARGWIGPAQFIHWATEHVAKKTSGNVEAKSASGKMVDFYHVENYDKDAFLKAIKTAISDRKSPEFTRLYEFLLTVFVEEDHACRGVVNREGFERLVNRAAFVPRQFGLAPPTASTERIEELYQGMEDSRLKGITFRKFLDWSVKHLETKVA*
Ga0103838_1001961	Ga0103838_10019611	F002297	DQAWTYEGGREHTANGGFTLTHKITHGENVIQEAERVFDVKANDGSKFEMEHLHKMTMTEESPFYGMVYWYTGRYGKNVERKMTVFFDKINKSILFVPKMKMDTTLTVDGEKISEFVFDNTQAKKHIKFFYSPDAYTKDYLYEEEWEYPGFSGIKCKIDFKRGGVSTYNYDGEYSWVNNANKFEVKSNEKANQEANGPYYGMDYWLVGTYWKSAVVTRTFTYEKKNRNFLLGKLFVENTITLDGEKFSQEKLDTRSTPYTMVWFNQPVRGLFPITRDNT
Ga0103838_1002097	Ga0103838_10020972	F024323	MGLFESIWFLVSSLIIMIVLLVDPKSSLAGSNTNAVVGLFSSPNSGQQFIYNFSAVLILLFFILTIALSLGN*
Ga0103838_1002175	Ga0103838_10021751	F000237	VV*SLFNFIHKTYYIIFTNKHLNVDQLTRFMILHYFTP*YYLYLVQLHVLFCHEA*DSDSGENVYEDKSGSYIS*FYDAMLKEFQDG*Y*TLYVFVYF*LHHFTPSTVNYFFFER*NIAELDEIRFYAVAPH*YFRPLMGLLVVSPSHYEGLM*MGL*FVLLSALPIIYNWYNSNNNYLPIIPMQSSLLQTSGFILFMLSMYCVSSMLPCGRYYYEPEGGYVGNP*VKFSYQYMYLYLG*FIHHLDLIEHYSFQFVQTFVRQCRKAPNS
Ga0103838_1002310	Ga0103838_10023102	F003495	MKENNEKKIKKEDEISKLIKAPPKDTAALDKRSVLAKVNSQGSGR*
Ga0103838_1002331	Ga0103838_10023311	F003081	MSCFFLGLYFVPEPGLVVELREEMFNDTRFGVEVFYMHVRGVDTIMVLSYMHILKKIFLKNYVTAESDG*
Ga0103838_1002668	Ga0103838_10026681	F065388	NGNDHMVFSGAYDKRAATVDAVTEILAGKCCEVECDSAWCAGKDWGVDKNNCQVISTSNTNAQELVCPSGTLMTEVEDGLSGNAHGVQKVASVTCCALDLIAPPTMAPSVAPTTARPTSAPTGAPSTSMPTLAPTSVADCLLGLRDPQDTDSEFLSGIDRCLPGCRSSSRAPTALHRRALESRLLSENNRRQ*
Ga0103838_1002773	Ga0103838_10027732	F034058	NIMVPFSFLSLMGDEIPKEDCAKLLESLADPEDEDGFFPYTPFLDKLCGK*
Ga0103838_1002802	Ga0103838_10028021	F049398	MAPFDEELSDDPEFPPFRTPLKISPNEGLLGGFLLPPGLYELEPPGRPGLYELEPKGLYELELEPPGLYELEPPAGLYELEPPGRYEPEL*
Ga0103838_1002853	Ga0103838_10028531	F001583	LGGYAFFFFHYIIFLGISLSATHLSDLTLTIVANIV*SLMNFYYKTYYIIFTNKHLNTDQLVRLMMLHYLTP*YYLYLVQLHAMFCHES*DTDSGENTIEDKSGAYIS*FYDAFLKEIQDA*Y*TLFVFVYF*THHFNPSTVNYFFFER*NVSEVEEIRFYGVAPH*YFRPLMGMLIVCPTHYEGVF*LLLYLVLIASLPI
Ga0103838_1002871	Ga0103838_10028711	F000491	EFFGFCALAFGDVDVDKDGFINLEEFDRLLESVAAVPRRYGLAPVSTQSTLERQMAHKKLFDQLDTKAGPARGVLGLDQFVEWAFDHVISKIGKVPAKDVGLYQVQDYTEEEYIGFVERAVNNPGSYEHASFYNFILNCFVEADEQCQGRITYDQFDKLLSRAATVPRHFGLAPPESSTEARKKMFDELELKRGGKGTGYVTARTFWEWTVVHVKGMIELQKAGKGWRENH*
Ga0103838_1003341	Ga0103838_10033411	F005202	KDMMRSNYQNDYDMSEFFNDRMDNYRTNNAMSQFKQMFNSYRSKRQASRRQGPRPAPRQTGDNLDLGDRLVEKLAEQKHHMEAKIGNMTCVMKELNVLDASNNIDVQAMKRDIQKYTMPSEWFKNKYEHLLDTCYEMATNLPADIAENSVVTGDSFGTVKLGEVKMFTKCCEKAKTKLCMHQDIKKKVESNFGPMEDILQETQLTEHEFFPLVMQLLHGKEMDYMTGGM*
Ga0103838_1003387	Ga0103838_10033871	F090442	MLFQLEYESGKSGIRRGIPAKPRKCIGKKQTLTPTNVDQK*
Ga0103838_1003662	Ga0103838_10036621	F009309	LTVTAAVKKLSVVSPGTATGSVTVQSFEWKSVWVSTATSFLSRNSFDTWFDWASFVVAWVESVLVSVGVVVDLGSRQKKSKERVNKLSFDGTSISGAVIGVQGVARVSQVDTSTGTWVVRNFPWNARFTGGFGVQNSALVSVSQSFTESIDFIDWGTFTSSDVIVEVAPASVFIQRVNGVGDVSGESS
Ga0103838_1003725	Ga0103838_10037251	F065401	DRTWEQALAPSKMVVDSVSLNSWLHMWARMCKGAAGIDDFPIWVQLIPRVIFNVICSKEGGLIISRSSLRNFYENFTGLSGDTLEKVSTEGFRSMSANGDYELDWSSYKLLFSNFLLGRTIYGPGKYVFGCFDNSDMTEKYKIDYNG*
Ga0103838_1003772	Ga0103838_10037721	F011139	MGLFLGSLAFLPLIYNVYNSFNKYLATIPMQNSILQTTTFILFMLSLFCANSMLPCGRYYYEPEGGYVGNP*
Ga0103838_1004654	Ga0103838_10046541	F005505	INRKYAS*FYDAMLKEFQDG*Y*VMYIFIYFALHHFNGATVNYFFFER*NIAEMDEIRYYGVAPH*YFRPLMGMLIVCPTHYEGVF*LLFYLVLIAALPVIYNIYNSYGKYVSAIPMQNSLLQTTTFILFMMSLYCSASILPCGRYYYEPEGGYVGNP*IKFSYQYIYLYLA*ILHHLDVLDHHIYQFSSTFTRRTNSYNLRVST*
Ga0103838_1004849	Ga0103838_10048491	F032526	IKLPKMSDCSEYDAKIESGRVAKYEYDTQASGSKACKGPDAADLTQYVWDYKNDENKDLGLEVGAVVHNREWSYGLIKYASLVQVAVSFKAKCTFSFRDEGATRTLKIVDDTGYTHGELDINIHAGTPCVCAVPRKEKIAVKDKVIRCPQKLSSRKAGNCA*
Ga0103838_1005046	Ga0103838_10050462	F013645	MRIEVNKIMNPAFLLGTAFNIAYWHRKYHSGTICKGVTNPHTSNALSGCDKE*
Ga0103838_1005385	Ga0103838_10053851	F000048	CEALHEKVSTFDKTCLTYAKVLDAANGAAQKMTTHAEADAEVAALRERYAKVKAVSDEWVKKVDILLKEWTLLDNTVTELNSWVAKDKSSEGENQFSLEKMESTLGELKNIFKEKEKLVENL*
Ga0103838_1005470	Ga0103838_10054701	F002556	QGAPRGWIGLEQFVNWATDHLITKVATIDVNADVDYYHIEQYGEHQYLSHLEEAVTNPSSRAHASLYEFLLAIFTECDSRSTGVLTFGEFDTLLSRAAEVPRTFGLAPPEASKEVRKQFFDSMEDKQMGGVTFRTLVAWTTEHARGKIADQKAGKGYKK*
Ga0103838_1005577	Ga0103838_10055771	F090441	SFPDSLALGALITRRVIVGCQFPDAALNRKNDCDTFRFHSGT*
Ga0103838_1006032	Ga0103838_10060321	F001583	IFWSLMNFCYKTYYIIFTNKHLNTDQLTRIMMLHYFMP*YYLYLVQLHVMFCHES*DTDSGESSLEDKSGTYIS*FYDGFLKEIQDA*F*TQFVFVY*IMHHFHASTVNYHFFER*NISELEEIRFYGVAPH*YFRPLMGLLTITPTHYEGLL*MGM*FGLLAALPLINSFYNSGLSYVPVIPMQSSLV
Ga0103838_1006148	Ga0103838_10061481	F061512	LADYDECKEDIGSMIGNLTCVMTKLDMLDSALQVNLKLWTTDVWQQLDLKKTLAGEDPEWRQKMIGGYTDCYQVASNWPQQSLDRNPITKVFGRHMIFFKCAMKQEKKMCGMAQMYSWLKTLYGDSDDFNWSQFGLPQDKYDRAALTIMVQTQAASKEERFINDFFVNDEL*
Ga0103838_1006363	Ga0103838_10063631	F001583	TNKHLNTDQLTRMMMLHYFTP*YYLYLVKLHALFCHESWDTDSGENVFEDKSGSYIS*FYDAMLKEFQDA*Y*TMFCFIYFFLHHFNGATVNFFFFER*NIVEMDDIRFYGVAPH*YFRPLMGLLVISPTHYEGLM*MGL*FGLLAFLPIFYNLYNSFHRYVGAIPMQNSLLQTSLFITFLMSLG
Ga0103838_1006481	Ga0103838_10064811	F000147	FAKRKRVGSWVNAPMFIAAWKKIQEEGLWQDKDWVVKVDVDAVFLPSRLRTYLEKVEVTNNGIYLENCKYVSYGFFGSLEVLSHTAASTYMANLDDCKAALNYMGHEKVTGNQAWGEDLFQQRCMDLHGVDKVQAFDINTDASCAAWRPEGQKKNRKWLPECALTKTPAMHHFKTPKLYFDCLK
Ga0103838_1006541	Ga0103838_10065411	F032157	LERGHVQLLSSRKIFTQMAFMKAMKVKKSKKVSFIAKGPRAKAVVFLGLGSTTKTSSGFKKTDLMKSKTGKIVTKKQHAAGRKAYKHIKGWTTALQQARKDLGVKGFVAIKKGTALYKAAKAIHEA*
Ga0103838_1006544	Ga0103838_10065441	F000048	AEVAGLRERYTKVKATSDTWVKKLEVLVKEWVLLDNTVTELNSWVAKDKSAEGENQFSLEKMESTLGELKNIFKQKEKLVEGL*
Ga0103838_1006894	Ga0103838_10068941	F000048	KGRYEKVKAVSDDWCKKVDTLVKEWKLLDNTVNELNSWVAKDRGAEGEQQYSLEKMESTLGELKNIFKEKEKLVENL*
Ga0103838_1006934	Ga0103838_10069341	F043763	KNKNFKMVATPRSNGKIQKLPTEEWGCDFADEAPEELIVSGREGYNETMNGRYQRGDRLHEGRVFYSHTERKFVIRWCPAKRSWFFDWRGLNTDTTASAALAQDIEHPHLATQAWRVFDGKKWISDAKLALCATIEKKQSEGEHVDFSEINGSEEGTSALTGGVSV*
Ga0103838_1007135	Ga0103838_10071351	F038531	EVCITIALVNGKPQVPFLGLGPGPFHGPGPLPYALGPAVCPEEVCTACEEEGATDLKPILEINCQEGLEDCHASAKDCSANAVDCNEPLKDCTCHIDPQDEGCTKECLIGPGPCLRENAITVGKCVAEHREEIAKCVLEQENTVGKCLNEKRISLAKAEECLACAPGCKKEEK*
Ga0103838_1007247	Ga0103838_10072471	F003081	MPEPGLVIELREEMFNDTRYGAEVFYMHVRGVDSLMLLSYIHILKKIFLKNYVTSESDG*
Ga0103838_1007312	Ga0103838_10073121	F041572	LGIQVSSNVGGFLSVGVLFLGFWAAVIDVVDSFGFFFSEFVGLLSSKSFGVVRLVELSEGGSIDSNDGTFDQSFCSDHFVGGGVVDDIDNPGGSGDSFAGPTEVTVVQPQSSEFHVATHSSDGVNSLWGDLGVRSWSTEFELSLLVHLWFSTTGLSSFVP*
Ga0103838_1007455	Ga0103838_10074552	F003081	MPEPGLVVELREEMFSETRFGAEVFYMHVRGVDSLMLLSYLHIFKKVYLKNYVTSESDG*
Ga0103838_1007639	Ga0103838_10076391	F000147	DYLGKVEVTDNGIYLENCKYVNYGFFGSLAVVSHDAAATYMANIDDCKNTLNYMGHEKDTGNQAWGEDLFQQRCMDLHGVDKVGAYDINTDASCAAWRPEGEKKNRKWVPDCATVQTPGIHHFKKPEAYFKCLKATQGNM*
Ga0103838_1007665	Ga0103838_10076651	F001583	ESDG*LLGGYAFF*FHYIVALGISLSATHLSDLTLTIIANIF*SVFNFAYKTYYIVFTNKHLNTDQLTRLMMFHYFTP*YYLYLVKLHALFCHES*DSDSGENVYEDKSGTYLS*FYDAFLKEIQDA*Y*TLYVFVYFFIHHFDASTVNYHFFER*NISELDEIRFYGVAPH*Y
Ga0103838_1007680	Ga0103838_10076801	F011139	MGLFLGSLAFLPLIYNVYNTFNKYVSTIPMQNSILQTTTFTLFMMSLYCANSMLPCGRYYYEPE
Ga0103838_1007689	Ga0103838_10076891	F000075	NRYDSMNEDDLLVNLESTLSSALSSEARGDSDAAVAKTSAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0103838_1007763	Ga0103838_10077631	F003081	EPGMVIELREEMFNDTRYGAEVYYMHVRGVDTLMILSYLHILKKIFLKNYVTAESDG*
Ga0103838_1007872	Ga0103838_10078721	F004023	FFDFKGKPYW*IFTDKQLNSDTMVRLAYGHYLLAFFMFYLGLIHGIDMHYD*KNETSFDGVDAEMAY*DEAISNEVSHVMDVLMIVTIVA*FVYVEPEALSYEIFM*GDIGLVTDVRYYGVAPH*YFRPFQAWLIACPHHKTGIFGIIFYMVVLFYQPTLHGTNEFNNFNKK
Ga0103838_1007952	Ga0103838_10079521	F003081	MPEPGLVIELREEMFNDTLFGAEVFYMHVRGVDTIFVLSYLHILKKIYLKNYVTAESDG*
Ga0103838_1008138	Ga0103838_10081381	F005505	MGMLTICPTHYEGLF*MGAYMVGLAALPVIYNLYNTMNKHVAAIPMQNSLLQTTAFMLFMMSVYCAASVLPCGRYYYEPEGGYVGSPSIKFSFQYLYVYLY*ILHHLDVFDQHIFQFSQTYMRKCSSYANRTLF*RKASASKKTRKKSFV
Ga0103838_1008478	Ga0103838_10084781	F000070	LKNDIRQKQQEAFEKIGAVEQQAELRSAEASRRLVALDLRMSGVQGGLGEHKRDILKLREEVNGLTVKSASHEVDIQKNSDAVRKMEKQRNMDEQNWKAQMDAVHDVLDTKVNEKPFEDLKHCVASLTKGTVKFAQVVGVFPGPRFDDAEGLDQSEADVELLGWEECA
Ga0103838_1008519	Ga0103838_10085191	F007792	EQLSKENAGILCASHGGWIVEIPHPPVNYWIKAKLLDLYTPDKQEKAGVPWGNLFWMGAVTEDRHDDHVNGNWWWPHANASVQWFDWGDNEPNDFHGQNCMTYMEYRDVIFQNYRDYFWNDSDCKNDVAHYICVKDCADCPEQGTTPAV*