3300009333: Microbial communities of water from the North Atlantic ocean - ACM52

Overview

Basic Information

• IMG/M Taxon OID: 3300009333
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117984 | Gp0126422 | Ga0103833
• Sample Name: Microbial communities of water from the North Atlantic ocean - ACM52
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Georgia
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 32113248
• Sequencing Scaffolds: 20
• Novel Protein Genes: 26
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Lingulodiniaceae → Lingulodinium → Lingulodinium polyedra	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	1
Not Available	9
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → surface water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000073	Metagenome / Metatranscriptome	2639	Y
F000075	Metagenome / Metatranscriptome	2622	Y
F000237	Metagenome / Metatranscriptome	1498	Y
F000981	Metatranscriptome	814	Y
F001028	Metagenome / Metatranscriptome	801	Y
F001439	Metagenome / Metatranscriptome	694	Y
F005505	Metagenome / Metatranscriptome	398	Y
F006501	Metagenome / Metatranscriptome	371	N
F009464	Metatranscriptome	317	Y
F011139	Metagenome / Metatranscriptome	294	Y
F013645	Metagenome / Metatranscriptome	269	Y
F017830	Metagenome / Metatranscriptome	238	Y
F023858	Metatranscriptome	208	Y
F025911	Metagenome / Metatranscriptome	199	Y
F038531	Metatranscriptome	165	N
F039152	Metatranscriptome	164	N
F041786	Metagenome / Metatranscriptome	159	Y
F043763	Metatranscriptome	155	N
F046166	Metatranscriptome	151	Y
F061512	Metatranscriptome	131	N
F071939	Metatranscriptome	121	N
F078190	Metatranscriptome	116	N
F079563	Metatranscriptome	115	N
F100323	Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103833_1001971	All Organisms → cellular organisms → Eukaryota → Sar	715
Ga0103833_1002194	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Lingulodiniaceae → Lingulodinium → Lingulodinium polyedra	688
Ga0103833_1002356	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	668
Ga0103833_1002444	Not Available	659
Ga0103833_1002642	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus	640
Ga0103833_1003114	Not Available	603
Ga0103833_1003117	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	603
Ga0103833_1003194	Not Available	597
Ga0103833_1003529	Not Available	577
Ga0103833_1003619	Not Available	572
Ga0103833_1003665	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	570
Ga0103833_1003727	Not Available	567
Ga0103833_1003752	Not Available	566
Ga0103833_1003791	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata	564
Ga0103833_1004051	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	550
Ga0103833_1004071	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	549
Ga0103833_1004320	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis	537
Ga0103833_1004718	Not Available	521
Ga0103833_1005040	Not Available	508
Ga0103833_1005146	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	504

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103833_1001623	Ga0103833_10016231	F000237	MVLHYFVP*YYLYLIQMHVAFCHES*DSDSGEATYEDKTGTYVSWFYDAMLKEFQDG*Y*VMYIFTYFSLHHFNGGTVNYFFFERWNISEVDEIRFYGVAPH*YFRPFMGLLVVTPTHYEGLM*MGL*LGLLAFLPIMYT*YNTYNNYLPIIPMQFSLLQTGAFILFMLSMYTMNSMLPCGRYYYDPEGGYVGNP*VKFSYQYAYVYMF*FIHHLDVIEYYSVNFSRAFIQRSFTLSQQGYRRDKTNLQH*N*
Ga0103833_1001700	Ga0103833_10017001	F000073	LTGGKVSTPTESLKLKDTFVNWMESKKELRNICDEGKGKLQWEREIPQEALDNLQNLANSDFKKNLGKIIHDIYLTGHNLFKDMPQGDHKKRAKYRFASKTLMRILPNELKAEVEGLIAGKTMTLDLYEILGQCTWGQGKSL*
Ga0103833_1001971	Ga0103833_10019711	F046166	EHTCPSGHVLQRHKAPNSDYSCDVCGKGVAEGETLWGCRLCDYDRCQQCANKGTVEFTDVDGDEVVLKDDNAFGIECYINGVLVNGEPMMKLRVSDRTIALEGDSADKWAAATVPIGQEYILKQALNLFAEVQSRKGV*
Ga0103833_1002194	Ga0103833_10021941	F100323	MSPAVEEPGLSLFCFAVYTKNTGSPKTSQELELFRMQRENSWSLFSCAEWAVYSDVVEDLGGGVKTIEVRDVKGDFNILKRKETGCWVNTGMFVQVWSAIRDAGHATNHNWVIKVDADAVFFPSKLVRALSDYTVPQEGVYMENCKYVDWGYFGNLEVFSKQAFITLVDNLETCYTSIPWKDGVLGGKYGPMGEDLFAQKCMDMLGVGRQENWMLT
Ga0103833_1002356	Ga0103833_10023561	F025911	NVVFGAAGHNGRMIVGGDLTVDGEVTELHNYEYDPASHPLPLGDDLSKICEMQPPPPCNETAFKIMTSEEVCPSKPEGVVKLVKSTADLPEDEPMIYNIIMEPPKDGAHTVKFQVDNPFTNYTDIYVKHSKKAGKYGMDPVCESMPFTAGCELEAPLIEVSCHEYDGVDPFALVSIYFASNEDAYVTDHAVLGTEIDKCCHPPSEYLEDGYGIIKYTFEIQC
Ga0103833_1002444	Ga0103833_10024441	F078190	AAKRKAGRKAMFDAIDGADGFKPRGKIAMGQFLGWSTTHIFSKVASIKGETGRVAFRHVEDFTKEEYVAYVEEAVNKPDSIASTTLYNYLLTLFVEADVDCKGKISYEQFDGLVEIAAASPRHFGLAPAGRDAAARRMMFDAMDYNKSGYVTFRKFLRFVREHAREKVADYKASN*
Ga0103833_1002642	Ga0103833_10026422	F041786	SLMTFGDKFSASEVDNAFGEFLIEDGMIDAVHLKGLMVSKKEEEAE*
Ga0103833_1002714	Ga0103833_10027141	F000075	SSAIAAANRYDSMNEDDLLVNLESTLSSALSSEARGDSDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0103833_1003114	Ga0103833_10031141	F006501	GLTKDANEKCQFLDFLTEPAALPKESADKKTKLAYGETMMGYWCNKDEQFKACSAATDALAPVVKECNKKQTQFESDFCAMAIVYHAQCQDLNDVCYTETRAAYDSSVASTSKLLGKWKIEYQALKKINCFLDVWMENGDANTVSSEKLAACKATEADASIMNIDFGTPVKEFVCADAGFGTLPDYPGTPEFVTKEYGAWP
Ga0103833_1003117	Ga0103833_10031172	F013645	MNPAFLLGTAFNIAYWHRKYHSGTICKGVSNPQTSNALSGCEKEAYEKNLKEKEVKNRKD
Ga0103833_1003194	Ga0103833_10031941	F043763	DFTDEAPEELIVSGREGYNETMNGRYQRGDRLHEGRVFYSHTERKFVIRWCPAKRSWFFDWRGLNTDTTASAALAQDIEHPHLATQAWRVFDGKKWISDAKLALCATIEKKQSEGEHVDFSEMNGYEEGTSALTGGVSV*
Ga0103833_1003529	Ga0103833_10035291	F001439	EAGAQTADGAQQGKDMVCVCKRIKKPANVKCNRTVEIEEPPQDPKTLKELVQCTPGGYNLTQAKRLLLRKEAKQRQEMELAQEKFEVDQVKLMTTCLSGHCNPASDLNSPTFFTPPKPVEPMECYDRCHDNQCKPIWKNPAQGWEDWYACVQQCVSGCYIIQ*
Ga0103833_1003619	Ga0103833_10036191	F061512	IGSMIGNLTCVMTKLDMLDSALQVNLKLWTTDVWQQLYLKKTLAGEDPEWRQKMIGGYTDCYQVASNWPQQSLDRNPITKVFGRHMIFFKCAKKNEMTNCALGQMKRWVEQWYGASENNTAYGLPEDEYEAAGLGLMVLDNAASEEEKFVSDFFWGVADM*
Ga0103833_1003665	Ga0103833_10036651	F011139	MGLFLGLLAFLPVVYNLYNTFSKYVATIAMQNSVLQTTAFIIFMLSLYCANSMLPCGRYYYEPEGGYVGNP*
Ga0103833_1003727	Ga0103833_10037271	F038531	QKIMKIASVFVCITIALVNGKPQGPFLGLGPGPFHGPGPLPYALGPAVCPEEVCTACEEEGATDLKPILEINCQEGLEDCHASAKDCSANAVDCNEPLKDCTCHIDPQDEGCTKECLIGPGPCLRENAITVGKCVAEHREEIAKCVLEQENTVGKCLNEKRISLAKAEECLACAPGCKKEEK*
Ga0103833_1003752	Ga0103833_10037521	F023858	KLWTCPNGRNSCVEYYLKLNGPNCCKCDQPSLQPPKMWDIPKSNFFTKVGFVGYEDTTELDDAPIKGAEHWATSSVLPKVLTVTYDYFLHREADDVITHRIDFNTSTGSEGSILYGGFAVAHDIDAHRAKFAQPEVCKGNIVPCCDTDEVMSKWCKHDYAVQQAEKSAVTV*
Ga0103833_1003791	Ga0103833_10037911	F009464	GYFGNLEVFSKQAFATLVNNLDTCYSSLPWKVGVHGGKYGPMGEDLFAQKCMDLMGVAKQENFGLTTDGACEADRPEGQKKNKKFVPTCAGVSTPSIHPFKKPEAYRECWAQAASVQP*
Ga0103833_1004051	Ga0103833_10040511	F001028	DGEGKMEISDAAKSGDGTLQNVGIKVGGKFKSPVNNQCFDTQAALDLHLKYLHDPKKQGSNLEE*
Ga0103833_1004071	Ga0103833_10040711	F005505	*Y*VMYIFIYFALHHFNGATVNYFFFER*NIAEMDEIRYYGVAPH*YFRPYMGILVISPTHYEGLM*MGLFLGSLACLPLIYNVYNTFNKYVSTIPMQNSILQTTTFTLFMMSLYCANSMLPCGRYYYEPEGGYVGNP*VKFSYQYMYLYLC*LLHHLDLIDHYIFQFSQTFLRKINPNLLK
Ga0103833_1004257	Ga0103833_10042572	F071939	TSNWEPHLIHYEPKKVLIKEWVTSDSFADDISSVFYEVDRDGNHMLEWNNGEIRNFINKVYQMKGLATPCESTMYDMYRIFDEDNNGGLDAVEAQHLAQAHVMSLVTALHL*
Ga0103833_1004320	Ga0103833_10043201	F079563	MKIYSNLRQMGGEELGHSEGTDFVIAEDLGHLLVGDEELLVFGILEVVLFQVSPKLFDAFSTASLFFANNVGEVSAKLHGFGESGSFGHFWMFFGG
Ga0103833_1004689	Ga0103833_10046891	F000073	KEYMDENSWMREHIETGKGNLQWERDIPPAALSNLENLAAKDFKGNLGQIIHDIYQTAHQMFSDMPQGDHKKRAKYRFASKTLMRILPDANKKEVEGLIEKGNITLDLYDILGQCTWLQPAA*
Ga0103833_1004690	Ga0103833_10046902	F000075	MEAYEAMNEDQLLVSLQSKLNSALSSESRGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQQVVDAR
Ga0103833_1004718	Ga0103833_10047181	F000981	KTGRGALTLDQFVEWANAHVVSAIPKIPTGDVGLYHVEDYSEEQYIGFVEKAVNNPGSYEHASFYNFILNCFVEADEQCQGRITYDQFDKLLTRAATVPRHFGLAPPESSTEARKKMFDELELKRGGKGTGYVTARTFWEWTVVHVSAMIDLQKAGKGWRENH*
Ga0103833_1005040	Ga0103833_10050401	F039152	GPRRSNWKLYVVAITCVCFLAGMLVNTVPESAPADNQLDSVVTQALKMFHGSKANMPNDDDYLAGEKDFQKRFKTLKGKADLYLQNETLTAWKTMNKKNVVVAGAIEKAFPQKDLKAAIANAMKGSGSGSGSR*
Ga0103833_1005146	Ga0103833_10051461	F017830	LWFNHKNSMAGTTILLQLKKGDEVCVYAYTGTWLADFPMNHYTHWVGLLLKPSQEEAEQLKKEAYESC*