NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009212

3300009212: Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample 3-1



Overview

Basic Information
IMG/M Taxon OID3300009212 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0117972 | Gp0126351 | Ga0103762
Sample NamePlanktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample 3-1
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Duisburg-Essen
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size177443159
Sequencing Scaffolds39
Novel Protein Genes50
Associated Families41

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum4
All Organisms → cellular organisms → Eukaryota → Sar16
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae4
Not Available4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Noctilucales → Noctilucaceae → Noctiluca → Noctiluca scintillans1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium2
All Organisms → cellular organisms → Eukaryota1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus5
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Conoidasida → Coccidia → Eucoccidiorida → Eimeriorina → Cryptosporidiidae → Cryptosporidium → Cryptosporidium parvum1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePlanktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Eutrophic Pond → Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biomeeutrophic pondplanktonic material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUniversity Duisburg-Essen, Germany
CoordinatesLat. (o)51.46Long. (o)7.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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