3300009199: Microbial communities of wastewater sludge from Singapore - Sludge7_b2_February

Overview

Basic Information

• IMG/M Taxon OID: 3300009199
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117969 | Gp0126337 | Ga0103748
• Sample Name: Microbial communities of wastewater sludge from Singapore - Sludge7_b2_February
• Sequencing Status: Permanent Draft
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 512525954
• Sequencing Scaffolds: 43
• Novel Protein Genes: 47
• Associated Families: 41

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1
Not Available	24
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	4
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA395	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Thermoguttaceae → Thermogutta → Thermogutta terrifontis	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Anabaena → unclassified Anabaena → Anabaena sp. CRKS33	1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified ssDNA viruses → Circovirus-like genome RW-C	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities Of Wastewater Sludge From Singapore
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wastewater Sludge → Microbial Communities Of Wastewater Sludge From Singapore

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Singapore
• Coordinates
  • Lat. (^o): 1.2
  • Long. (^o): 103.45
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000344	Metagenome / Metatranscriptome	1257	Y
F000606	Metagenome / Metatranscriptome	993	Y
F001346	Metagenome / Metatranscriptome	718	Y
F001679	Metagenome / Metatranscriptome	653	Y
F002371	Metagenome / Metatranscriptome	566	Y
F004521	Metagenome / Metatranscriptome	434	Y
F007073	Metagenome / Metatranscriptome	358	Y
F008498	Metagenome / Metatranscriptome	332	Y
F010686	Metagenome / Metatranscriptome	300	Y
F014836	Metagenome / Metatranscriptome	259	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103748_10009062	All Organisms → cellular organisms → Bacteria	1436
Ga0103748_10016642	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1120
Ga0103748_10022408	Not Available	989
Ga0103748_10023860	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	962
Ga0103748_10025690	All Organisms → cellular organisms → Bacteria	933
Ga0103748_10028531	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	892
Ga0103748_10029858	Not Available	876
Ga0103748_10029861	Not Available	876
Ga0103748_10031242	Not Available	859
Ga0103748_10032086	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	850

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103748_10007237	Ga0103748_100072371	F102643	LGRPIAKKYSDGKVKRTLKRRSKVLETVKRETDGASHYPMGIRIIHFCSVSWWFNKSTECLVGSSVGCYGRYLVCMFVNIKYERGILHGGR*
Ga0103748_10009062	Ga0103748_100090622	F024534	MKQQFIDRIKALPDVFMLASLVQFKYIQDISEPNETNFKVSMAGGHYTFGKPEHYNKFMDKYLTWLETRKP*
Ga0103748_10016642	Ga0103748_100166422	F001679	VWGMSWRQEAMKGAEGCEKPGGAVKRALRPGFPNWRGLNT*
Ga0103748_10022408	Ga0103748_100224081	F083890	MTTAKTAAQRQAERKARELAAGRVQWKRWVHPDDVPALAESADKLARKRDRAEQKAG*
Ga0103748_10023860	Ga0103748_100238601	F071272	AESMAGGAWQDGPAPKDGSWILGLFHGLPYVVAYDSWEVGGETLPDGSGSPPDGYESGWCLAGDNLHVMDKDEPEKWARIIHPNRHMPASWDGPGD*
Ga0103748_10025690	Ga0103748_100256902	F035850	MPPRKASREEARARTKTDTGGQVENTKVIEITLVKELGKIAP*
Ga0103748_10028531	Ga0103748_100285311	F000606	MKAALALIFFACVAGSMAADARSQLIQQLVEQGQVIAQGVFGQLQQQVLALAQQAIGQLSTLIGSFGRFDFNAVLDQFKPLVNQLINQALGGVLGSLSGLIGGRASFDFGAIFNGLFQELSKPLTEMGQHILNQGLAAVLGSFGSRGIADLFAGLQQQIGTAVSAAQGALTGALSNLASLGSSILDASKPHWEQLQEQLIGHGLNALGSISETIGNLHGTITGGR*
Ga0103748_10029858	Ga0103748_100298581	F025295	ITFERSDEIMVSGPGADTELLRRREVPTPDKQKLITRKGNLP*
Ga0103748_10029861	Ga0103748_100298612	F039671	LVGIYEPFGIILLMTPPTVSIPNDNGVASIMTIPPSSVSSPQMTPPWTAAP*
Ga0103748_10031242	Ga0103748_100312421	F017318	VRRRASQTKSPIKIGNPTQVTPIKFQRTVTGAYDIITNGIVANIGVFNFSLSDLPSASEFTALFDLYKIESVEIEWTPEYTELTDASTLSNAVNVYFNSAIDPAGNTPLTVDDVLQYRSLHSTAITKMHKRQFVPAYLLDGIIPASCYISTASPNSNLFGVVYGIPATGVAMTFRSKATYHLSMAQAK*
Ga0103748_10032086	Ga0103748_100320861	F039594	DFYYSISPEPQSMRWRVVVTDGQGVLVTVRNHRCPLQATWVKEVWCDAAYYDRPWMCDIEIPTRAAHPGDNAYFVSVYGKNATYSIAFWRGRENCHEFTGAGRNEGLDFCAGLIPYATWRWENYHNLDNEARCFFNELYEHFKCQPCWNGVSLECNATLQAFACYESFKRCDEGGFYTGTCRDSCNAVVYECANWFESVDLEHYNCSSSRYLDSNAGVCTGSSDFSTFNAGTQHFLVEDPDLILFKSSPDSVSSSSAISFSVALSVIALILTLII*
Ga0103748_10032570	Ga0103748_100325702	F000606	MKAALALIFFACVAGSMAADARSQLIQQLVEQGQVIAQGVFGQLQQQILALAQQAVGQLSTLIGSFGRFDFEAIIAQFKPIVNQYINQALVGVLGSLQGLIGGRASFDFAGIFNGLLQELSKPLAEMGQHILNQGLAAVLGSFGSRGIADLFAGLQQQIGTAVTAAQGALTGALSNLAALGSNLLDASKPHWEQLQEQLIGHGLNALGSISETIGNLHGTITGGR*
Ga0103748_10033429	Ga0103748_100334291	F078768	VRWVAAVNRLTLRVSRIIPGDWGKVGPGWLVRLL*
Ga0103748_10033934	Ga0103748_100339341	F000344	MRPKHPHAAESGVGKHTARESESAKACAAGKERVANAHPHFLAPGP
Ga0103748_10034189	Ga0103748_100341892	F086799	MKTNKIIYSRLISKGNYENAKIEIELEVEAGEKASEVFEAAKKWVEKRIAVEKLSDYTIEKARKVMDDKRNHTLAQIEEAEEILAKVKVSDDELPF*
Ga0103748_10035059	Ga0103748_100350592	F038530	MRPTAAHAAWSSVGKHTARESEAPNAVRMGKSAWRAPTPDFGPG
Ga0103748_10035547	Ga0103748_100355471	F078768	LRWVAGINRFPLNVSRIIPGDWGKAGPGWLARPL*
Ga0103748_10036074	Ga0103748_100360742	F052615	VALGQRPAKRGGRPSAKWSRRANGVADVSWPGSQAGAANTSPSELRGLTQQSCRRKAQDGPATRPTTPLAVENSVGKPAAPVAPNAGMGKRAWRTPIP
Ga0103748_10036158	Ga0103748_100361581	F007073	GFASTPDQVVNPPNWHGTWTAQGRYGGVMYACPVGERVYGVYSNAGFFIGRINGRELEGTWYEGGRGDRNDWQGAFRITLSADNLEFDGYWHRVTQDGTEYRWNEQRLGAPWPSAPSHEQCLVPYDEELTGTHYTVPGYGREPVSFALCRDRWDQIYGSFGSPDGYVEGWSVDNASGFQGYKYDSNGRSGAFILRNISPTEARGFYWRGRLATQNIATAEEVVLHRTSYISNLEDCERVGPGFLERLRGPTNSAGALSVSLALVAVLFF
Ga0103748_10036172	Ga0103748_100361721	F001346	VKTFREVGDVKNDTADLWTKGNLRVKRRDPWHRANALPKAAAVPALSGEDADNKTQTCLDLVRKPVAQPPAKAS*
Ga0103748_10038188	Ga0103748_100381881	F101221	KLKKFNKNKSNKKNHIMVQLNKHIDIYKERAWRVITYNAHLSENGSTGLYTLSTGSDVRYLTFSTILSTDEFVNMAIPYNEYRIHKAVFTSLSPLTSVRIPYLYVNVEPSNTAANPNNVRVCASDTSRILSPRALCPEAVEYDLRGVGTTTNIWNDTGNTNIGGQFNLGNYINGTLPSGINWEVKFQLIIEFTNPK*
Ga0103748_10038447	Ga0103748_100384472	F032274	LISFDFTEQTEIVKREKRKHLEARQDWQRAPKIIVTEEYIALDKKLEPIEEELFDLIKKMPLAIEKKIKGKICVIPSGLKTDEELISRVRELRKQASKIGKELDALFFKTNPEWAKFYEYTDKT*
Ga0103748_10038787	Ga0103748_100387872	F010686	LDSCGQAIKGTWGMSWRQEALKGVEDCDKPGGIVKRVLIPGYPNCLTLNP*
Ga0103748_10041374	Ga0103748_100413741	F042865	MSLRVPDYETFLAADDFNKRIWWSFMQSVVNDLPLNGNVEPEGTVRANKSCLYVESTGGAAVLWFNPNGNGSSTGWIVK*
Ga0103748_10042099	Ga0103748_100420992	F001679	VWGMSWRQKAMKGVEGCEKPGEAVKRALIPGSLNYRSLNT*
Ga0103748_10044521	Ga0103748_100445211	F098810	MSVQHRFWWRVVRKYEGDEMWVPILRLAFVHSNGAISLKQGLPHQRKSYRVIQRGLRRYLGLKVSPTRAQQLANEALAHAVFAFYRRALPSNVDRSTVILRLTAVITEGRREKDKTRRVKEKGVHRVADEVHLWLPPKYAGDSADRPNPEPEPGRNH
Ga0103748_10050004	Ga0103748_100500041	F034471	MKQKDKLVKYWKDKGYFVINLIRVTPIGMPDYIALKPNEVIFIE
Ga0103748_10050168	Ga0103748_100501681	F000344	MRPRSAHAALSGVGEHTARESESAQCCANGKERVANPHPHFEP
Ga0103748_10051295	Ga0103748_100512951	F042359	GGYNCAPAVLALDNIGSRADGNDTLVIINRAGGNLGIGAFTLGTLFGLLYDDAENVLSFSVNGSCQLRQSISNNFPRTTPRFETFVPAGRTGWAKVYNQTGGIAILGAAINLNPNAASSAGAFNGGHNLHHLTLNCIDGYIVPVFPPSC*
Ga0103748_10051675	Ga0103748_100516751	F043390	MKMGYMVKNEDSQKVITLTLTAEQLEVIDGALEMYCMGLAEQNDPHLKYATNAHEAIYNVLESNFGVEA*
Ga0103748_10052756	Ga0103748_100527561	F000606	MKAALALIFFACVAGSMAADARSQLIQQLVEQGQVIAQGVFGQLQQQILALAQQAVGQLSTLIGSFGRFDFEAIIAQFKPLVNQYINQALAGVLGSLQGLIGARASFDFGAIFNGLLEQVTKPLTEMGQHILNQGLAAVLGSFGSRGIADLFAGLQQQIGTAVTAAQGALTGALSNLAALGSSILDASKPHWEQLQEQLIGHGLNALGSISE
Ga0103748_10055213	Ga0103748_100552132	F037503	IGLGGFTAYQTLTNSECYNTCPGVRRGVLRSRAERETTQIIS*
Ga0103748_10066805	Ga0103748_100668051	F026814	LLLVLAFVSAVLASTPLHPRWPASFSTTAIVHFGDRPRPDFTRWFYSKNQNIDRLDGLSEFAGELYFATRFFNHNQQREYAVFYQRDSSVQCYTRAITNPLPQPNFSNFTYIGQALINYVPVYHWAHRRGNDLFQFYDTQDTRQPVRFDAEQRGRPAIQINYSEFDSGSQSPNIFTIPSQILAICTPTQNNNAFSVGF*
Ga0103748_10074586	Ga0103748_100745862	F100051	MLERLICAVFGHHYVVERVLNHGARKVGCTRCGKHWAMHDGTRSFVPWDGEFESLYAPGGILAEASGDVTPNA*
Ga0103748_10078245	Ga0103748_100782451	F014836	SCPAVQGYCPQEMIYQGCHCFHEWNDANRVGNWTFPENWLQLYEPAWVSFVSIAGDNTVTVDVERRVNELYVGPNRWDTTRLVIDEDLTIVYDDVPVISAVRGYRLPNGVVRLVIQGKGFGFVSDDIQVTVHEYYEIDGDSNVEDREEFVYDCQHVTLTYRDAKIECNIAPTRPMPYTLTVQVAANGMVTDHQFL
Ga0103748_10079997	Ga0103748_100799972	F008498	VLNPLQLIVVGQVGHIYRVQKKLWNDSIEDVLQGLFIGRTLHVCCGKSLLGDVRLDADAENNPDIICDASKMQDFVKDNEFETVICDPPYNGNFQWNHDLLAELSRVASKRIIFQHWFIPANPTGTYKKAQEKFLLSDVLVWQPKTYFGRVQVVSVFDAVS*
Ga0103748_10082292	Ga0103748_100822921	F026607	MIKKLLSTTVAVAIALSASAAFAGTYVTGPLPSEFGGGFIPSDPAILKNVQKASKEGAKLAASVEKCYSKGAANYSKNKPTGVSTCLNDPAKGVLPKFTAKINGIAAKAPGLPPCHNYVADGNLIAGLVKGFNPSVYCQSPSGAFVDGTASF*
Ga0103748_10086594	Ga0103748_100865941	F052619	SLKKVTLQRWGLALLTEVPMATKRNKKSAGSRRTRQDKIPVNSQREIAMRSPVYRPVYKFSRTVTERYDISTDGINPTLVAFVFSLDQLPNYTDFTRLFDMYKIVKIDVQWNPEYTELTDAALVSNAVNVYFNSVIDLTDSSAPSSVDELLQSQQLQQTAITKVHSRKWEPTFLMGGLVPCSCWLPT
Ga0103748_10096246	Ga0103748_100962462	F016728	VCVTCVWAGVDSVWEQEKPEARKMLENAAESHTSGARFVGRRFDNRNIE*
Ga0103748_10097858	Ga0103748_100978581	F056539	MNCKVAIFLLACLSVVSCQLVLLNPPGRGFVGDNARHAPCGITPTTTGNTVAWEQGTVREIEVQILGAGGGGVIEDRYSCVLQGGESNPIEPLFPIEGALKVQVPDWDFQIYRLHVRLPSFVCRGDTTMLQYGKWQLI*
Ga0103748_10101047	Ga0103748_101010471	F090427	QDGSLSVSLNIGNFGKTPTTPGVHGQHSTFGLQLGFSQTNSHFGFGHSGLWHFQSHLGSSQTASHSGFGA*
Ga0103748_10101073	Ga0103748_101010731	F026580	MRTGSEPGQVAQASFEPVRFAVTQRVKGCYCVQHGMHDSGGSRKGISQRKDAERRDKLSVRAGEDTGPGQGP*
Ga0103748_10103889	Ga0103748_101038891	F051952	FTTTALSENSWRILGKVTENEVTLVRYFLSKIVYTDEVVTLEEACILFLSFEKMVQKMSQHEAYRAKYGPEIFIFRAVLTGLEDVVSANPLDRLERMREIYGFYQGKLFSRRYYFSVRGQLTRELRLRVLTRFPKKHKPKAFVGKGYGDHGTAKDMAYDGSPSWQEVAMADTN
Ga0103748_10103902	Ga0103748_101039021	F051952	FTTTALSENSWRILGKVTENEVTLVRYFLSKIVYTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGSEVFTFRAVFTSLEDVVSANPQDRLNRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLRVLTRFPKKHKPKAFVGKGYGDHGTAKDMAYDGSPSWQEVAMADTN
Ga0103748_10104632	Ga0103748_101046322	F018007	MFNGWKITNILDVGLCELDTADGPYNKTGYQLEHREDGFAITVGLMEYISGWSALEILCWLNEKQAIPRRYDNARRH*
Ga0103748_10105564	Ga0103748_101055642	F002371	MQNNLINSKTRGGTRQGSGAKPKYNEQTKTVAFRCPVSKVDELKLIVKYKLSEWLVK*
Ga0103748_10110805	Ga0103748_101108052	F004521	GFSGSRAQYVPNVGAARGVYRATYARPRGYGTRPRGVPRPVVPAGRAPGGAGLLAAILGPIGGLTGCLCCLNTVGVWGLFITAIPLTVFLRKWLAAYKSRTGQSGAEELIVPQMLLIVLLVCSFLYTFMRRS*