3300009119: Lake sediment microbial communities from Leach Lake, MN

Overview

Basic Information

• IMG/M Taxon OID: 3300009119
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118723 | Gp0139364 | Ga0117938
• Sample Name: Lake sediment microbial communities from Leach Lake, MN
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Minnesota - Twin Cities
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 46682928
• Sequencing Scaffolds: 38
• Novel Protein Genes: 40
• Associated Families: 37

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	16
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium	3
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Sediment Microbial Communities
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Lake Sediment → Freshwater Sediment Microbial Communities

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → lake → lake sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: Leech Lake, MN
• Coordinates
  • Lat. (^o): 47.18868
  • Long. (^o): -94.626271
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003014	Metagenome	513	Y
F003471	Metagenome / Metatranscriptome	485	Y
F018394	Metagenome / Metatranscriptome	235	Y
F021795	Metagenome / Metatranscriptome	217	Y
F025314	Metagenome	202	Y
F030484	Metagenome / Metatranscriptome	185	Y
F033858	Metagenome / Metatranscriptome	176	N
F036301	Metagenome / Metatranscriptome	170	Y
F040718	Metagenome / Metatranscriptome	161	Y
F041848	Metagenome / Metatranscriptome	159	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0117938_100001	Not Available	63018
Ga0117938_100463	All Organisms → cellular organisms → Bacteria	1912
Ga0117938_100538	All Organisms → cellular organisms → Bacteria	1821
Ga0117938_100649	Not Available	2417
Ga0117938_101033	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1526
Ga0117938_101374	Not Available	1395
Ga0117938_101540	Not Available	1352
Ga0117938_102059	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	1232
Ga0117938_102143	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1216
Ga0117938_102193	All Organisms → cellular organisms → Bacteria	1208

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0117938_100001	Ga0117938_10000115	F003471	MAEYKKPQEVPVPNTSGYPNNVANTQTKKKRGTGAATKGTGYSKNSQ*
Ga0117938_100292	Ga0117938_1002921	F100040	MTKKQTRPDLEKIISLGRKGIIYPDHMERWIQFKKEWAEVDLTIWNGLKKKMKVDDSGTLTLSPPLSSNEKKWAKKFIQRAEERGLC*
Ga0117938_100463	Ga0117938_1004633	F052016	LESSPSTGDPKGAVMSERINVIFSSTNKNFLYNCEIPISMLPRIGERIRLSIPGHSDIRCYVEDMEWQYAELEKAIDISIVARIKMLQED*
Ga0117938_100538	Ga0117938_1005382	F062883	MEKGKHMDCYLKDIDIELWSKVRARATLERKTMREVIFESLKWYVTPVETAASSDRKKKGKKKE*
Ga0117938_100649	Ga0117938_1006494	F025314	MGLLNRKFPAFSLEFVGEEIRSMINPELAQDMDILCDVIVYMEYSLHSMQKIVQINHAEDKLAKCHEDIQNTEWWKEKQSLVNSAKTIEDVWPFLKKISK*
Ga0117938_101033	Ga0117938_1010332	F021795	MKKEADRIRRWRERQKAEGKSSFTVLLSQEAREFLAEEKEKTGDSYAVIVEKALHTLKKQGYRPPVLRAFPKREESVARAAAREHHHPPVSAVTSHENGAQSRILIDDLANYPSLEDIEREQTGKEQNGIYDLKSNEGLITRLLRSSAGPFGRKKKWFK*
Ga0117938_101374	Ga0117938_1013742	F041848	MTYPSETITVKQYSTAVAAQGALFVSIVSVAHSFAHIRIGAVGAKNLEMERLNLGEFVHYVCPDGALYEIRLLSVEGFDTATLLVTRTQ*
Ga0117938_101540	Ga0117938_1015403	F054136	MIENKTQLLADLAYIGSKVQAKTNVYLFSGAAFLWHGLKDATKDIDICCSYEEADRMVSALRIFGNMESVTGINDIHFLRIFLKSFALQIFIKEIWMGDEYQLLEAALCDSLTFGGITFLVPDIKTLIIIKDKQIQALYNEWTKLKGEKGI*
Ga0117938_102059	Ga0117938_1020593	F053838	MRWNFWSLCGPLIAAHFSASAKPAGRALFFLGMKRDFPTAPAGDMGELVHLSH*
Ga0117938_102143	Ga0117938_1021432	F040718	YRLAPRAPDQIVLPFVRPDLPLNTNPAGVVNELDNIFIITENNDGYLIP*
Ga0117938_102193	Ga0117938_1021932	F075044	MKKVLVIVMLIIAMGLVGCPRRYYDRDRHDHDRGHDYEHRDRDRDDREHLR*
Ga0117938_102386	Ga0117938_1023863	F087393	MKKNILMGLCLGILLVVPNVVLAGCTDLGGFTSFSVTGNTVTLYSGTKPFVKFDVRCDVQPVQPKSRLQLIKSSVCDGDEILVDGVKCTILNLTSL*
Ga0117938_102746	Ga0117938_1027461	F103518	MVCAVTEGLDHQEGRPVADMKAKTIRKSIFLEPEKVGETAEIKIGHHDFARLLRKQEAVERYLEEIKRVTASIEKILAGNAPRRSYEIRYVADIDDYYM*
Ga0117938_103111	Ga0117938_1031112	F075042	MRDTYSPPLWAVLGCLANIILSVAMIWYLIFFLSSCGTCAARPYAYAFFVGFGIILVLSGFELFKLLFSVRKKSCRVCSMVAKVIEIDGKVQ*
Ga0117938_103309	Ga0117938_1033091	F058258	MPGGNVRKIVIIAFAALMAGCASLPPTIDQGEYQNYRYGFIVRLPDDGWLMTKTVPESFAAYLVSEAPDRVLLLLHKSQTRGLIAVRGGTLYLSYENALTLQERLTELIEPFLDLDWTRLVRQVPESRGSYRLGHWDASGLQWQERSGSRPLAGIKHTSMGYYFPLNGDTCYVTFYLFSEPDTFDDNVKVLQRMAGTFSSGEVFTSRQYGW*
Ga0117938_104007	Ga0117938_1040071	F099500	MKKKIFILLSFSILLFSPNLVLSDCLDLGGFTSWKVEGDHTIIFYRQNSPMAKVNLRGCKVTASSTVRLMKSYVCDSDSLIVDGQECAIMTITSASSQ*
Ga0117938_104233	Ga0117938_1042332	F081505	MKIKTGLTYSVAILLLIGFWFIFYQAFEEVSPPITSTESFSEALWETWGVTIIIVSFILFAGGAGILVLLGGDWRWE*
Ga0117938_104374	Ga0117938_1043742	F049730	AEIMQSRRELRGKRKPSMLILGSFEKLKQDLIPALFRIATDHEIGDIDIIPSSEAVDLKRLMGYTLIFVAFEIYRDNESFFRMLPESIQDRITILTRPADFPSVAPEIRCACFCTELKALLPREEAQLFDHHTESAKPRKRKV*
Ga0117938_104428	Ga0117938_1044282	F084900	MSPELIDDVRVCLAFIEALRRTADMIFSKEEITISEKMKIGGPVIYTIVAHKENGDSLRASGQAYIYSDLIVVCIESVCKALGEPTSPHHYEYLSY*
Ga0117938_105169	Ga0117938_1051693	F080207	MTMRKTSIVIALCLVLVGTLTATAGATATPTDGSAIQRFDIAVGDYKYGELAVDTETDHVFAYANVGSESADKQVTLVARKDRSSPHTIDIAHSIVNSDGQVFWKGTLTAAQLDWIHTYGGRAVFFFRVNHSLF*
Ga0117938_105508	Ga0117938_1055081	F045183	MRLVRAVELHSEATAMKLKDTLKRWINRLLHPALRDSEIIKTLSGLPGVRPFLYEFKLGPLFLISAWLFLFHANYTGAAEDWILYFFGGLTVVGVLSLHKSVMRFLYRIAQFDKPVEGQDRTIMITAETVTLLGFLMAAMIFLNEFQSTGFGM*
Ga0117938_107769	Ga0117938_1077691	F080207	QKEGRMTMRKTSILVALCFVLIGTLTATAGVTAAPTDNSAVQRFDIAVGDYKYGELAVDTETDQFVANANVGKESADKKVILVARNDVASPHYVAIAYSVVTNGGQVHWKGALTAAQLDWITHMAMARSSS*
Ga0117938_108531	Ga0117938_1085312	F085861	MSISQEASKNIGTMCCGPWTHQPNPARKMKVGILLVTIGLIWLGARLGLLDFSWLQAVHFWPAVFILLGVWMVYKGFRQGKPRTIDDKTEEV*
Ga0117938_109845	Ga0117938_1098451	F097610	DDIDDLITNYSEFEKKIDDKIQAYQKLKDSPDSIATAILIQSVESQKKSNDLAERMFHLSRVMVIFTGGALIIATGALTFASLAYFTQGTDKTFWGIVTMSIISLGVIAILLVFWPRKEKTIPKRKK*
Ga0117938_110108	Ga0117938_1101081	F071802	MGANTSKPNYASLISKILIVLVILNIAGDVLAAAFFLWDPSLGELSVYGGLIASFVGKSGAVMITSAILLGYAVVYAVSVFGLLSKLKWAPPLVIAVSVVNRALALGVIFEPNVAFLIWSAWKLVIIALAFYLWRKT*
Ga0117938_110735	Ga0117938_1107352	F092956	MPSKVSRMNDSNARMLARYQHLYNKARKVKAFQLQKIQKAETREVCLSVLLKAEVICDNTLREV
Ga0117938_111002	Ga0117938_1110022	F036301	MLCSTRILIHDERPDTPEFLLEVMINHGYKAGVAKDEHEIMAMLSNDRYDVVLTNGGYRELNPDQYIQLKSSSVYIIGIKESHNQNQDMNLKADLYLPRPFLISELWQAVETPFKLCKE*
Ga0117938_112218	Ga0117938_1122182	F053838	MRYGFWSLVVPLVADELGAPAKTAGRADFLLGMERDLPAAPAGDVGELVHLSHGWSAF*
Ga0117938_112802	Ga0117938_1128021	F051235	VVAIYKKKRSRQFLGFIAVTMRWPILFLLTIGRFFNFNCIFTVYPGSQRDVDGYFPKGLKWFLKPIASGKPFVAGMITTGNGLGRGLVLAVPNTVDQFKTDRKLVGNIMKRLKHTKTLTGAKTIAVAGQGPRFFKSHFPYEQPFVYGLKGRVFSVVETVERVSEKHGLAKDANTVAILGVGEIGEAIIRNLEEKGYRAVGIDIQIKDGRVELCN
Ga0117938_113260	Ga0117938_1132601	F078013	MRDEALTNVKAPPPSEYDIAQFKEAFADNEEESDFGIHERNAKQRALIWYSDTLYNASDLRVIMPEVVPDHHEFDGIKTIQLLTAMYPEAYFLPSREYGVAIFVYPPDGTKALKKPNKIEMERLKADSCTIHVIQREGELIHVLEFWFE*
Ga0117938_113902	Ga0117938_1139021	F086690	ILLFLSVLFVPMVGAVTESTSQSRSQNYLNQDSAELLSPLKMHVAYVGKTQQARMDGVITYIDKISGGTGTAGLRQIQEDYLTAAFTVPVMRTVEEVTEAREEMRYQSILFVDETNVQMAMFNGSTSDMRSSAEASLHPVENSFNSLKYSSWLASQNTRFMVFNQSSERRTAILDDLSLHGMDVTYPKTLSSQIDAQHAELENALLQNKDG
Ga0117938_114641	Ga0117938_1146412	F033858	MSEAGSVKKIESLRKIRLSATMLEVGFKSENLSEMIQCQIELEELAARLQAEQGYLVTPEQCEAAKKSLDAFVALVDQAMEKAALNEGITPGSPRPKPTTLE*
Ga0117938_116822	Ga0117938_1168222	F030484	LCNYEEVGGEKIMVDKEKEEVLDKTMGKMNQIRKAAGEFKENVADLVKDMNVETKDWRFNVESHEEGVTIDVAVKLLISKKK*
Ga0117938_119886	Ga0117938_1198861	F097607	MKAKKLVLLSLLVCLIGCYAGSVKPLLNRLEFKAENEPIRTLRVLLLTDNSYRKDEIEKFVSKCSRLVESQVGIRLEILDWYQIKWGDELDDIYKMEIRIAADTWNKRGEFDITLTFVHFVQSIEGGKLPLGATDTFYWRYIFVKELDPFILLHE
Ga0117938_120021	Ga0117938_1200211	F061019	MINRWHQSCLSNLSEVTLQDGYEMSEGEYYLGINKTADPNCPRLVLGFKLDGEKVEIYKNREAYIVVNTKTDKYLMCLGWKHAHYVFEECVRALAPSGRA*
Ga0117938_120438	Ga0117938_1204381	F003014	MPRRGSKQPYKPKVEYKYTIKDIAELAGMTRNALGVAKVHGKIEPGDFKSVVSFLTRRIIDNRLTGDLFTPAAQTGKRVKGSKSRALVWGKKPKR*
Ga0117938_123339	Ga0117938_1233392	F092956	MPSEVSWTHDSDDRMLARYQNLYKKALEVKAFQLQKIQSAETREVCISVLLKAVAICENTIKEAGF*
Ga0117938_125631	Ga0117938_1256311	F091072	MAGTMKKTVMPVREEPEEDIKALLEGTDVAWTQYKQGKGTRVASAKELDAFLDSL*
Ga0117938_126007	Ga0117938_1260071	F018394	VFSSCHSRNISDVRPAMTKEQVVSLWGPTNLITYKNANGMTLEIWEYHFSGSDSICSIIFVQDRVARTECRPLEEK*
Ga0117938_128654	Ga0117938_1286541	F045834	MKRQGETRMLFFVMTGMAFLFVAAVVPLSGFSIFMAVQVIAIVLGGITVVSLFKRYRGLDLFSAASIFFLYILMVSLFSPGLVNALAAYLTK*