NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009105

3300009105: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 900m, 2.7-0.2um, replicate a



Overview

Basic Information
IMG/M Taxon OID3300009105 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0118094 | Gp0127950 | Ga0117905
Sample NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 900m, 2.7-0.2um, replicate a
Sequencing StatusPermanent Draft
Sequencing CenterGeorgia Genomics Facility
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size546222175
Sequencing Scaffolds21
Novel Protein Genes22
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia2
All Organisms → cellular organisms → Archaea4
Not Available4
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Hadesarchaea → unclassified Hadesarchaea → Hadesarchaea archaeon B3_Hades1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfotignum → Desulfotignum balticum1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → Syntrophus gentianae1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomecoastal water bodycoastal sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)N/ADepth (m)143
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013484Metagenome / Metatranscriptome271Y
F016493Metagenome / Metatranscriptome246Y
F022812Metagenome / Metatranscriptome212Y
F059607Metagenome133Y
F060609Metagenome / Metatranscriptome132Y
F060972Metagenome132Y
F075650Metagenome118Y
F076658Metagenome118Y
F084254Metagenome / Metatranscriptome112Y
F087249Metagenome / Metatranscriptome110Y
F088317Metagenome / Metatranscriptome109Y
F091390Metagenome107Y
F101182Metagenome102Y
F101186Metagenome102N
F103060Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0117905_1000097All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia153885Open in IMG/M
Ga0117905_1000100All Organisms → cellular organisms → Archaea152683Open in IMG/M
Ga0117905_1000147All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia128550Open in IMG/M
Ga0117905_1000301Not Available91640Open in IMG/M
Ga0117905_1000354All Organisms → cellular organisms → Archaea85760Open in IMG/M
Ga0117905_1000424Not Available78873Open in IMG/M
Ga0117905_1000496All Organisms → cellular organisms → Bacteria70221Open in IMG/M
Ga0117905_1004944All Organisms → cellular organisms → Archaea15406Open in IMG/M
Ga0117905_1006720All Organisms → cellular organisms → Archaea → Euryarchaeota → Hadesarchaea → unclassified Hadesarchaea → Hadesarchaea archaeon B3_Hades12042Open in IMG/M
Ga0117905_1010663All Organisms → cellular organisms → Bacteria8158Open in IMG/M
Ga0117905_1012984All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria6885Open in IMG/M
Ga0117905_1016432All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfotignum → Desulfotignum balticum5587Open in IMG/M
Ga0117905_1020882All Organisms → cellular organisms → Archaea4512Open in IMG/M
Ga0117905_1021229All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → Syntrophus gentianae4445Open in IMG/M
Ga0117905_1022529All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon4211Open in IMG/M
Ga0117905_1024825All Organisms → cellular organisms → Bacteria → Proteobacteria3860Open in IMG/M
Ga0117905_1032313All Organisms → cellular organisms → Bacteria3053Open in IMG/M
Ga0117905_1036762All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales2724Open in IMG/M
Ga0117905_1051021Not Available2043Open in IMG/M
Ga0117905_1051407Not Available2029Open in IMG/M
Ga0117905_1165077All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium735Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0117905_1000097Ga0117905_100009792F059607VRVISNLKSFVIARGNEEKVELKVASELGGKELEDEGFAFTLWLLENASIPFLRGLAEALDEAEIRKKAGLGY*
Ga0117905_1000100Ga0117905_100010049F091390MSTKSTTIRVNKSTKEKLANLDLVRKDTFDEILSKLIEFYEKNKEAGRK*
Ga0117905_1000147Ga0117905_100014758F016493MGWFGNKVAKFRQVPDPYFSLHVTAKFLAGVGIGVLLATWLPVWTGWIFIGVALLIAIPSARIVLTR*
Ga0117905_1000301Ga0117905_100030195F091390MAKKSTTLRVDQSTKDKLENLDFVRKDTFDEILLKLIAYYEKREGGKK*
Ga0117905_1000354Ga0117905_100035491F091390MSTKSTTTIRVEKCTKEKLENLDFVRKHTFDEILSKLIEFYEKNADGRK*
Ga0117905_1000424Ga0117905_10004247F103060MAILAPADLPSVLKVRSEPMKKYVLSKLAFPVTEVEITEDQWETIFRVAGDFISGYFPREQKLALFWTTPLQSTYPLPADAYWVQEVSWDPVTTRIDDVFGAESFLFNIGNISGIQNILTDYHLLQSYRKFSQKVLGTEGHWEVIGEVEGNVEGDSLDAKDQLIRLYPTPKGAFPVVILYIPVVNHFRSPQARAICYEMMEAEVKHAVGMARRKVAGMPTPDGGSINYDGSDLVQEANAVKETIIEKALNLGEPYPVLIWNILLPILMFGGSLIKDII*
Ga0117905_1000496Ga0117905_100049643F088317MPGPEDNVKYPPPPNIPQEELNKTAPKTRTDCYKGIEAPPIPPLEKSQLLRVIESGFKETEDASRYVMEPPRELPYRILPLLTKFVSTNTRHLKEIGAFRTLMPELFGDAGYKAVDDAYASFAYGEFKTAQARGQLKNAPNCTAREIGIFIATVYDIQNFPIVIAEATDDKVRIQLYKGLPVYCPYDVRRGDYRLCAATAAYERELTKLCNPKYRAYLSRTKAIGDDCCELTIELDPDYKG*
Ga0117905_1004944Ga0117905_10049443F091390MSTKSTTIRINQSTKEKIENLDFVRKDTFDQILLKLIEFYEKNKKKM*
Ga0117905_1006720Ga0117905_100672016F076658MWYRYYLTVPRGTTKIIRARKEIELPEGVITKVRVRFPPGPRGEVFTAVFQGTHKMWPRGAGNWVWGDDEAIEMSEHVRNIPGWHYWLEGYAPDTSYNHTIWWDFNVLEKEYAETWGPIQELVRLLKDLIGL*
Ga0117905_1006720Ga0117905_10067206F075650MRFREYRVTSRQITDPMFGIPRTVESLVFLVSHVDGVEVDKTFSVVSEKLAQEFESYLEDGTYKNYEWCLVKDGVGFVPPRIAKRSRV*
Ga0117905_1010663Ga0117905_10106634F060972MAYHSNLHTYIVGINYESPDEDKGHFDIQRKVTMKELAIEIADYLQNGKSSYPAFPPEANPEVWYVWDMDDPDDGDVYHQLNHEINKIITNKRKAA*
Ga0117905_1012984Ga0117905_10129843F060609VSELKKSEAVSVSRWEFCRKAIKRSSIAAAAGVAGYLAYRKPEVRSFFGAKDAYAANTGAGSLSLKGDSN*
Ga0117905_1016432Ga0117905_10164326F101182MDTYEEDLQYEKKMDRISEQIEELMLDAMIAALIKIKDRYLFYSSITTRPQNDPYPF*
Ga0117905_1020882Ga0117905_10208824F091390MSTKSTTIRINQDTKEKIENLDFVRKDTFDQILNKLMKFYEKNKKRCKK*
Ga0117905_1021229Ga0117905_10212295F022812LLQAISKLTLRVQTVEIAYLTLRQDLSAKSAAMTAQKNFH*
Ga0117905_1022529Ga0117905_10225294F091390MSTKSTTIRINQDTKEKIENLDFVRKDTFDQILNKLIDFYEKNKKRCKK*
Ga0117905_1024825Ga0117905_10248251F060609VNELQKSEGVSVSRREFCMKAVERTTIAAAAAAFAYEKPAIRSFLGVKEAYAAFTTARAGKFSLKGDSN*
Ga0117905_1032313Ga0117905_10323134F101186MLSENQQSLFADFHKSVEAEGILDAKTSHLIKVAAAMAFGCYP*
Ga0117905_1036762Ga0117905_10367622F087249MDAYIAAASENVDPSNIGTIDELSAKFLDTLSPKEMGFLMYDNPQPLSLQEVDREIRNKYKAKYGTKNLKRGQFFRLKSGTITFFTHEHNLKFKVDN*
Ga0117905_1051021Ga0117905_10510211F084254IPVYISEPMVIEILAEVIRQSKRHPRADQVVSALAIRGLPIAENDVMTVFDHYDIEKKIPDSH*
Ga0117905_1051407Ga0117905_10514071F013484ANGDEDAALRLVMELLELADVAPQAEIARAVGYSQARSLRTYKQRLEEEGLGGLFDRPITGRPVVTSHLAVERAVVQAVLEAVITEHVLPDDEALAQAVNGFLAEAQSPWAGQVTASMVETIRLRLEIQRPILAQQLQAANDSQPSAQEQVRLGRTKAGGAFILAVLLVETGWLKLAELLPMAPGYAVTAVQWLLTAIFAVIYDVRRAFHLDDVRDIGFALITGRARPLSHSTFQHLLHAIPAEAARRFYEATARWIVRGLGAGVRRISLDGHNLPRYTKVVDVIKGKIGNTGRILKAEEMVLAFDLDAWLWLALRVYQGTKKLSQALLEMVAELRRHREGIEGLWRIFFDKGGYKGQNFQALSALPDVHFYTPAVRYPTNVEQWEQLEEGDFDPDPFVFDKHADLPAQEQLTYRLADMTMTVNIREKNRVVGTVELRAIVIHDPKGQTPAEQWPLVVLTDDYQIDARELANEFGDHWGQEFGHRIGKHDLCLDIVPPGYRLTSRRDENGQLQREVEYDSTAFFLSSWLRCLVFNLMSLFAKRLGGEYARMWAGTLLRKFIRRPATLYLIGNELHVVFDPFQNQDDLRPLLDELNAKRVQLPWLNGLVVQFSIEEDEPLHPLAEPEKRNRLFGDG*
Ga0117905_1165077Ga0117905_11650771F088317MPGPEDHVKYPPPPKITQEETSKNLPKSKRDHYEGVKVPPLPPLEKSQVLRVIESGFKEKEDIGRYVMTPPPELPYRILPLQTKFVSTNTRHLKEIGAFRTLMPELFGEAGYKAVDDAYASFAYSEFAAAQRRGQLKNAPNCTAREIGTYIATAYDIQNFPIVVAEATDDRVRIQLYKGLPVYCPYDVRRGDY

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