NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009004

3300009004: Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01



Overview

Basic Information
IMG/M Taxon OID3300009004 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0111384 | Gp0124048 | Ga0100377
Sample NameGroundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size738583690
Sequencing Scaffolds400
Novel Protein Genes484
Associated Families158

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea1
Not Available199
All Organisms → cellular organisms → Bacteria13
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla12
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → unclassified Ignavibacteriales → Ignavibacteriales bacterium CG_4_9_14_3_um_filter_34_101
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → unclassified Ignavibacteriales → Ignavibacteriales bacterium CG18_big_fil_WC_8_21_14_2_50_31_201
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense95
All Organisms → Viruses → Predicted Viral3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Ozemobacteria → Candidatus Ozemobacterales → Candidatus Ozemobacteraceae → Candidatus Ozemobacter → Candidatus Ozemobacter sibiricus1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Desantisbacteria → Candidatus Desantisbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_40_2324
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium CG2_30_54_102
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Lamprocystis → Lamprocystis purpurea1
All Organisms → Viruses → environmental samples → uncultured archaeal virus6
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Moranbacteria → Candidatus Moranbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_39_102
All Organisms → cellular organisms → Archaea → DPANN group9
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Wolfebacteria → Candidatus Wolfebacteria bacterium CG_4_10_14_0_8_um_filter_37_111
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → Candidatus Altiarchaeum → unclassified Candidatus Altiarchaeum → Candidatus Altiarchaeum sp. CG2_30_32_30538
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → Gallionellales bacterium RBG_16_57_151
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium CG_4_9_14_0_8_um_filter_57_213
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → unclassified Candidatus Altiarchaeales → Candidatus Altiarchaeales archaeon HGW-Altiarchaeales-23
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon2
All Organisms → cellular organisms → Bacteria → FCB group1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDevelopment Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biomeaquifergroundwater
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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