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Sample 3300008982
3300008982: Combined Assembly of De NOVO T5 (live) Tyne Sediment Benzoate Gp0125094, Gp0125095, Gp0125096
Overview
Basic Information
IMG/M Taxon OID 3300008982 Open in IMG/M GOLD Reference Gs0117429 | Gp0125094 | Ga0116011 Sample Name Combined Assembly of De NOVO T5 (live) Tyne Sediment Benzoate Gp0125094, Gp0125095, Gp0125096 Sequencing Status Permanent Draft Sequencing Center Shell Corporation Published? N Use Policy Open
Dataset Contents
Total Genome Size 189266441 Sequencing Scaffolds 4 Novel Protein Genes 4 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Proteobacteria 1 Not Available 1 All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. PtaU1.Bin112 1 All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom Type Environmental Taxonomy Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment → Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Sediment (non-saline)
Location Information
Location UK (Newcastle upon Tyne) Coordinates Lat. (o ) 54.971158 Long. (o ) -1.703654 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Associated Scaffolds
Sequences
