3300008942: T14 (1) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2)

Overview

Basic Information

• IMG/M Taxon OID: 3300008942
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117429 | Gp0125106 | Ga0115981
• Sample Name: T14 (1) (Live), Syntrophic microbial communities from anoxic layer of the sediment of River Tyne near Scotswood, United Kingdom - benzoate enriched in lab, transferred 6 times DE NOVO (2)
• Sequencing Status: Permanent Draft
• Sequencing Center: Shell Corporation
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 128532745
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Sediment → Syntrophic Microbial Communities From An Anoxic Layer Of The Sediment Of River Tyne Near Scotswood, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater river biome → river → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: UK (Newcastle upon Tyne)
• Coordinates
  • Lat. (^o): 54.971158
  • Long. (^o): -1.703654
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064732	Metagenome / Metatranscriptome	128	Y
F090409	Metagenome	108	Y
F101218	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115981_1008318	Not Available	1251
Ga0115981_1020219	Not Available	727
Ga0115981_1027460	Not Available	591

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115981_1008318	Ga0115981_10083182	F090409	MKKEFAGILQTSFGLTDSVDISLEMPGYLIGDANQFLEGARRKRVLVTVEIQEVAD*
Ga0115981_1020219	Ga0115981_10202191	F101218	MLPSMSRRSISMSKRTSKPALPRIKEPPPLPSIDELIAECRAVGWDDLAKSMEKIRYLDSPEGQKALERRERRISRL*
Ga0115981_1027460	Ga0115981_10274602	F064732	MEAAAEAALAAAPERCTMPPALSAERHVRFPSSPMDPGRFIAAIVTRSTSPPGRPEDTDQIDALSDLFLSEYHLMGI*