NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008794

3300008794: Microbial communities from freshwater in the western basin of Lake Erie, USA - 882-1



Overview

Basic Information
IMG/M Taxon OID3300008794 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0117964 | Gp0126289 | Ga0103700
Sample NameMicrobial communities from freshwater in the western basin of Lake Erie, USA - 882-1
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Tennessee
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size6425982
Sequencing Scaffolds17
Novel Protein Genes18
Associated Families18

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales1
Not Available15

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Freshwater In The Western Basin Of Lake Erie, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Microbial Communities From Freshwater In The Western Basin Of Lake Erie, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biomefreshwater lakelake water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
Locationwestern basin of Lake Erie, USA
CoordinatesLat. (o)41.76Long. (o)-83.31Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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