NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008792

3300008792: Microbial communities from freshwater in the western basin of Lake Erie, USA - 1163-1



Overview

Basic Information
IMG/M Taxon OID3300008792 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0117964 | Gp0126286 | Ga0103697
Sample NameMicrobial communities from freshwater in the western basin of Lake Erie, USA - 1163-1
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Tennessee
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size8336686
Sequencing Scaffolds15
Novel Protein Genes16
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available14
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Freshwater In The Western Basin Of Lake Erie, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Microbial Communities From Freshwater In The Western Basin Of Lake Erie, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biomefreshwater lakelake water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
Locationwestern basin of Lake Erie, USA
CoordinatesLat. (o)41.46Long. (o)-82.71Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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