3300008786: Microbial communities from wetland soil in Czech Republic - M3_cDNA

Overview

Basic Information

• IMG/M Taxon OID: 3300008786
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117955 | Gp0126228 | Ga0103639
• Sample Name: Microbial communities from wetland soil in Czech Republic - M3_cDNA
• Sequencing Status: Permanent Draft
• Sequencing Center: Friedrich Schiller University of Jena
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 96789886
• Sequencing Scaffolds: 40
• Novel Protein Genes: 45
• Associated Families: 41

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	1
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	1
Not Available	23
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Wetland Soil In Czech Republic
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Wetland Soil → Microbial Communities From Wetland Soil In Czech Republic

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → wetland area → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Czech Republic
• Coordinates
  • Lat. (^o): 50.14667
  • Long. (^o): 12.45083
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000396	Metagenome / Metatranscriptome	1185	Y
F001167	Metagenome / Metatranscriptome	758	Y
F001296	Metagenome / Metatranscriptome	728	Y
F001471	Metagenome / Metatranscriptome	688	Y
F005001	Metagenome / Metatranscriptome	415	Y
F006209	Metagenome / Metatranscriptome	378	Y
F008989	Metagenome / Metatranscriptome	324	N
F010144	Metagenome / Metatranscriptome	307	Y
F010404	Metagenome / Metatranscriptome	304	Y
F010853	Metagenome / Metatranscriptome	298	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103639_1000022	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	4161
Ga0103639_1000047	All Organisms → cellular organisms → Bacteria	2902
Ga0103639_1000193	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	1828
Ga0103639_1000517	All Organisms → cellular organisms → Bacteria	1333
Ga0103639_1000937	Not Available	1074
Ga0103639_1001436	All Organisms → cellular organisms → Bacteria	934
Ga0103639_1001584	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	899
Ga0103639_1001662	All Organisms → cellular organisms → Bacteria	883
Ga0103639_1001775	Not Available	865
Ga0103639_1001788	Not Available	863

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103639_1000022	Ga0103639_10000221	F010853	FMRKTQHKTSEIVLKEQTMPTTSKSSKKVANTATATVNPEFVDAFAPLYLSSVERVADLQKKTLDIAAEQTAEWLNAWKKAFSFSPVTAPSFIFDVAGQAVQTAIETQKGAIDLVVEQSKSVAGIAKTRADAYAKIVDGVSKTIKTSVEKSVDAQNKVLNFASEQTKAVFEGTKKQLGGAAGPATVVVDSFQRGAEAVIEAQKSMLNIASQPFVSKN*
Ga0103639_1000047	Ga0103639_10000471	F011711	MGDKRQKNQLQMLLAFAVEGRSEAPKARREGTESLTAKRARENPAIPEQV
Ga0103639_1000193	Ga0103639_10001933	F001471	MMKTRLVVVALLSLAVALPAFGKTYKSTYPVACSELWSAVQETLSNPDNYNVVEKDDAKMTAAYDVKHAAHVTITGAALQRTNHVTLVSKGTGCEMQVVSNYSGFEHDDKGDFRKRVDESLAKVQAAPASQPAKPEAPAK*
Ga0103639_1000517	Ga0103639_10005171	F063196	LDKALRIYAWFLLIVTALPAAARLAKPKELARILLVRYQNPQRRKRARIGGLIYLGLSLFAIPFLLRAEMRQER
Ga0103639_1000937	Ga0103639_10009371	F077206	GFEVRVFVNGSPKTTVDANKRNELRACMTAAGLTPDEVNEKVHELYITNTTEFVGSR*
Ga0103639_1001436	Ga0103639_10014362	F022165	LNEIICPLCHGHGRERKELLVVRWRSREFERELQNVADEAAFGTTGGLSSPFERHEPVYSNESD*
Ga0103639_1001584	Ga0103639_10015842	F104088	GGPWMISQLQQQKRIQPLPAFGYAGVVVKAKRKELLALLRKGLRSNRLAFPAQSGAVEWPEIQIKQNV*
Ga0103639_1001662	Ga0103639_10016622	F082104	MELRLTDQEEELLREILQDHHKHLLHEINKADHYEFKVGLRHRCTVVEGLIDKLQAVHSS
Ga0103639_1001775	Ga0103639_10017752	F022810	MDIRKYLGTSILTAALLLACGIPGLAKNSRTVALTHDAVLSGKTLPAGKYVVQWEAHNPQAVVEFAQDHKVVLSTEGRVEERSKGYDHDAVVYNTASDGKMSLAEIRFAFSNKVLVFDQETPQLKAAR*
Ga0103639_1001788	Ga0103639_10017881	F068527	ENARDRSLWRFNLDDQVVQPAVASPGYPSGELAAFAAAPSSGCADALLSACAYSPAPRLDRRPTSPARIGVFSPGSTGGKHPARTACYALPADWLPTSQLALVSSLQLGLRLLPTHIWRRPSARLARTTSGLRRRLLQLPACAFRCCNFPACAGSCPHLPNRW*
Ga0103639_1002240	Ga0103639_10022401	F088225	MTISPNLGEIGAPQLGHFNDATPEGATTGEAEATAALGVDVVLAPHFEQNAASSGI*
Ga0103639_1002681	Ga0103639_10026811	F011011	GRCYTASDTTMTSPILRILGAVAGLGSAILCWFLGTTLAGPLRQAKLFSLGSSQYILLAFLFIPALILAVVALFWVPPRVSGEGPLPEGRRWRLVLVLVFVAAFVFGVVR*
Ga0103639_1002937	Ga0103639_10029372	F010144	MVTYLSIVFGHLLKLVAVAAGAIYAGMVLMRYRTDRPHYRLSFELRDPARSVQHLVVWLGVKVLAACLRFAGAVFNMLLEASAEVGEWFMRRSPTVQQSIRSRFLV*
Ga0103639_1003310	Ga0103639_10033101	F011079	MLKITPLDCEIKGSLRVKRRDPWPWANASPKAMADPRPVVKTRMKIHRRVLTWFAGRWRNHWLKRAEKPHSKAAHRKVPAGPATRPITPLAVENGVG
Ga0103639_1003666	Ga0103639_10036661	F006209	MDCKAIRDLVSDQRGGELSAEAREHLSKCAGCGGFLRDARLVHAGFCALAEEVAPEASLGFASRVVRRLQEWEEKGAGREFFETVGRRFVYATLALTLALLLSLVLPTSGPVRGVAGADFLGLQSNSQSSQPDVIGGEIGDSHDWIPGRLAD*
Ga0103639_1003673	Ga0103639_10036732	F008989	MANNAVLIRGLDRDIYNSVIAKARQQGKNVAELVNEALQQYMQESPSESQDVFDTKKLVIAGTVLLSKADIMGLHKELGNFHLENSGELTFDKDVDREAFQKIEHIHNTGKLRVPTDVHHFALLKAGHVRGEVEKY*
Ga0103639_1003927	Ga0103639_10039271	F036578	MPEELVNPASPPDLSIQLQRDRANQPDPTFPQSPGIILETHRAIFQSQAAA
Ga0103639_1003954	Ga0103639_10039542	F098626	MELGLDQAIMDTPVAREIQHQLQEWLRSRCPDHLGAIMEKMKN*
Ga0103639_1004236	Ga0103639_10042361	F040688	MVADGCEPPPETRLEQLAKQAAELALLLAGLSARGLGNDPQALDAVEELALRLLKEVSAVRTGRNRAVGESSGIWRAMQPVNRR*
Ga0103639_1004301	Ga0103639_10043011	F102721	ESENRRQPSQRVKPGAKAQEGSLAAPEIAKADESRKLISWQIRKIREPAEIEYSSTAQPAMQGSVEVRGVSKAQPEVETPGASRVNRNR*
Ga0103639_1004413	Ga0103639_10044131	F022634	MRVLDIPRSGKRGDTVWQSNRYGQYSYPAFIPFNPRTPAQVAVRGTFGAVSKRWRQLAEDQRIIWCAVAKTKRSKVRLCQCGPLSGFLFFVKVNVALANRGIAQVDLPPGYESCSPPAVPNVFDTTRFDQPPVGPVLFLRANQFVAEWRDRPQEIMAGQPP*
Ga0103639_1004578	Ga0103639_10045781	F104421	VEAAGKQAKEQAGNFDPGMEALKGAAVAGERKAVTSRRFSLREKEKAAASREASIPRLEKTALGERNGESSGALKRGVQCRA*
Ga0103639_1004962	Ga0103639_10049622	F076848	MLSDPKLTELRSFWMWDPLKEKWDFIRDWEEHKVEAMRKFEQYVFGREGGLGQE
Ga0103639_1005415	Ga0103639_10054151	F030980	LLCSLIALGLRSLNAFGILTPNVVQQGQTLWYMSFYKGALLFFVIAIATASYSWVRGEKT
Ga0103639_1005433	Ga0103639_10054331	F005001	MHGIEHRRQKRRTIRLSAPRWPFSPAHGSMLPGSPLAASCPEPVARNGLSLSRNGCHLSAASIPGSKLPACYFASFQIGYTARSALRLHYRFPVCAGYGGFTASNPLHFPDSVRPAAPAVSTPLRDFCLPRDQSVQPRLLPAGPPDESARFPLAPRRPS*
Ga0103639_1005564	Ga0103639_10055641	F011395	MAAWRRAVVTGERKAVARCRFQPGRTRATFKALIRSSQKGRRGAWKLSPVIRLQSSEPCMPASGQAELRITWNQV
Ga0103639_1005786	Ga0103639_10057861	F096679	LRKRSGPGALIRSPYLAIESGRGEREEIGRSRKAGRAAASSAERFDPEGCKSPKGEWRLEKQPVESAGNAATGQKRRSSPDRGEPVRGVELKGRTGSGTGWQGREVAGQEL*
Ga0103639_1005818	Ga0103639_10058181	F001296	MEDAERRQPLWASEKPLRATGSGQKAASGEPGSIDPGAGENGPRGAERRIVRRFCPRCSMPCMPVVSWAGNQVTWNH
Ga0103639_1005867	Ga0103639_10058671	F010923	RRKRSGPGTVIRSPCLKKIRVAGSERRSGGFPRWTGRQQTPLNALILREVKVLRESGDGGRGQPNQVVEVQRASGIEAAATGANRDAVAEPKGRTGTEADLEGCEVAGRER*
Ga0103639_1005971	Ga0103639_10059711	F064917	MDSDSGTQRKCFWVLLTLLSLGAYFLPLGWGVVETLVSVAVSWWVVYRSGIF*
Ga0103639_1005992	Ga0103639_10059921	F000396	FEVPSDLISQPNSPPACNGTELCSQDRRAPPLRLPAALFVRRQINASRFTCQLTWPEPASRSGLSLSRNDCPSPDHHFKVNAPGLLLRHPASRLSCPFGLRLPCALRFAPVRARSRPKTRCLTRARHSQPFLGSPLPFGAFQTLPAQSVQPDSWPGSPPAEHSRLPFTPRLRIYFISIETRSPFQARFAS
Ga0103639_1006311	Ga0103639_10063111	F033058	LTWLAGRWRNHQPKRAEKPHSKFSGRETLNGPATRPVTPLAVENGVGKPAAAEKRAPNAGTGKRAWRTPIPHLSRSDRKVRPGL
Ga0103639_1006571	Ga0103639_10065712	F095766	MAAPVWHGKDVSRVVAAGEKIMILLITASSRGPECGLAMEQGTGQKTQVAGSVPQAVTRLRNTDYEALAIDQSLLEADFRALDTLLNHAGT
Ga0103639_1006829	Ga0103639_10068291	F069734	MSPWLNRTLHPRLAPRMNLRVHSGHGNLGMAFGALLISIRRFTIGKPTMNSPTETLTYAFDHASVTAPTSYRGSRNGSAEEPR
Ga0103639_1007267	Ga0103639_10072671	F000396	LVPSDPISQPNSPPACIGTELRNQTRRVISLPLPAAFFGRLRINAFRFTCQLLWPELVSRSGLSLSRNDCPFPGHHFEVEAPDLLLQYPAVRPSCPFGFQLPDVRRFAPARARSPPESRCLTSVRHSQPFVGSPLPFRAFRTLPDQSVRSDSWPGSPPSKRSRWPFAPWLQFYFTSLDT
Ga0103639_1007342	Ga0103639_10073421	F005001	MHGIEHREQERRTIRLSAPRWPFSPAPGSVLPGSPLAASRPEPVARNGFSLTHNGCRLSATSIPGSKLPACYFASFQVGRSARSALRLRYRTPDCAGCGRFTACDPLHFHHSVRPAAPTVSTALQDSYIPRDQSVQPRLLPAGPPDESARFPLAPRRP
Ga0103639_1007678	Ga0103639_10076781	F077206	LVRDRSAVQVFVDGIPKVTVDANQRNELRNCMVSAGLTPAEVNHKVHELYMTNTTEFTSER*
Ga0103639_1007773	Ga0103639_10077732	F066909	MPPEQVAAIDRRATDSGLDRTKYLLRLVDQDLARPARRLKRRFASLHLLGRFRSRGSSNAQVRAALRAQGEKDR*
Ga0103639_1008084	Ga0103639_10080841	F001167	MSQFTDLVRGGEMVREVKQKFPETEAVFEKFGLRPSCFDCSIEMAARKVDARLEDLLVEVNAAVYKNRGVTARVS*
Ga0103639_1008450	Ga0103639_10084501	F008989	CELAIMTNNAVLIRGLDRDIYNGVIAKAKQQGKNVAELVNEALQQYMRESPSESHDVFDTKKLIIAGTVLLSKADILGLHKELGNFHLENSGELTFDKDVDREAFQKIEHIHNTGKLRVPTDVHHFALLKAGHIRGEVEKY*
Ga0103639_1008465	Ga0103639_10084651	F010404	MQPFTLLQRRSALRQIPAAGSTLLAYIFEAALEFQSARSASRSRPRLAFFRLTGLDRCESPVANFLS*
Ga0103639_1008537	Ga0103639_10085372	F064454	TGQNERRKKKLVEDLEKLLFEEIPEMETPRIKRCEWCRQPLPNDRYHLKICPQCRKESIDTFMKTH*
Ga0103639_1008548	Ga0103639_10085481	F073595	LNREGHAVSAGPVKTFRNVGDGKNATADLWTKGNLRVKRRDPW
Ga0103639_1008601	Ga0103639_10086011	F031415	MMTHDDLEKIREEHEAEDIWRKYSRHFVADMLEACAICGTIREKEHLARCRWCEDVYFCKQGVCSQQHQAEMHPAVAFWTW*
Ga0103639_1008716	Ga0103639_10087162	F036354	RKGVIARWGLKEAWIKDASRWTRTGYEAYGTGRAGK*