3300008784: Microbial communities from wetland soil in Czech Republic - M1_cDNA

Overview

Basic Information

• IMG/M Taxon OID: 3300008784
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117955 | Gp0126226 | Ga0103637
• Sample Name: Microbial communities from wetland soil in Czech Republic - M1_cDNA
• Sequencing Status: Permanent Draft
• Sequencing Center: Friedrich Schiller University of Jena
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 65153897
• Sequencing Scaffolds: 52
• Novel Protein Genes: 56
• Associated Families: 46

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1
Not Available	35
All Organisms → cellular organisms → Bacteria → Acidobacteria	3
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Wetland Soil In Czech Republic
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Wetland Soil → Microbial Communities From Wetland Soil In Czech Republic

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → wetland area → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Czech Republic
• Coordinates
  • Lat. (^o): 50.14667
  • Long. (^o): 12.45083
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000209	Metagenome / Metatranscriptome	1592	Y
F000526	Metagenome / Metatranscriptome	1049	Y
F000757	Metagenome / Metatranscriptome	905	Y
F001296	Metagenome / Metatranscriptome	728	Y
F003313	Metagenome / Metatranscriptome	494	Y
F005713	Metagenome / Metatranscriptome	392	Y
F009471	Metagenome / Metatranscriptome	317	Y
F010175	Metagenome / Metatranscriptome	307	Y
F010404	Metagenome / Metatranscriptome	304	Y
F010853	Metagenome / Metatranscriptome	298	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103637_1000001	All Organisms → cellular organisms → Bacteria	6813
Ga0103637_1000067	All Organisms → cellular organisms → Bacteria	2613
Ga0103637_1000098	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	2359
Ga0103637_1000110	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2230
Ga0103637_1000218	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	1703
Ga0103637_1000340	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1434
Ga0103637_1000513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1211
Ga0103637_1000519	All Organisms → cellular organisms → Bacteria	1209
Ga0103637_1000734	Not Available	1060
Ga0103637_1000987	Not Available	952

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103637_1000001	Ga0103637_10000016	F011011	MTPLILRILGAVAELGSAVLCWFLGSTLASPLRQGGLFSQSKAQYALLAFLFVPALVLAVVALFWVPPRVSGGGPLPEGRRWRAVLVLVLLAAFLIGLAR*
Ga0103637_1000067	Ga0103637_10000672	F015124	VTTSSRAQECAAALQQGTGQPTQVANSVPQAVTRLQTREYDALAIDQSLLEADFRALDTLLNHAGTALPIYVNLALHHSDRVVRETQVALRRAEREKQWAMSLAERVLRNQLRAQVTGILLTSELALRQPAIPAEVVAKLRLVQDMAEKMRSQLHVF*
Ga0103637_1000098	Ga0103637_10000983	F010853	GVFSPDKSGGIHNLETQHKTSEIVLKEQTMPTTSKSSKKVANTATATVNPEFVDAFAPLYLSSVERVADLQKKTLDIAAEQTAEWLNAWKKAFSFSPVTAPSFIFDVAGQAVQTAIETQKGAIDLVVEQSKSVAGIAKTRADAYAKIVDGVSKTIKTSVEKSVDAQNKVLNFASEQTKAVFEGTKKQLGGAAGPATVVVDSFQRGAEAVIEAQKSMLNIASQPFVSKN*
Ga0103637_1000110	Ga0103637_10001102	F011011	MTSPILRILGAVAGLGSAILCWFLGTTLAGPLRQAKLFSLGSSQYILLAFLFIPALILAVVALFWVPPRVSGEGPLPEGRRWRLVLVLVFVAAFVFGVVR*
Ga0103637_1000218	Ga0103637_10002182	F092931	MPSSAEEKREIGSALMVIGWVLVLFAFLVMFFQPAAVKLGESRFQIIAAVLVLAGLALNIAGARVRTRNR*
Ga0103637_1000340	Ga0103637_10003403	F042777	MTQAVARYVVSFQAEPFRKGRRHHWMICRAQNPDELVSWGHTLTQELAEMAARSEVNSLSSGLTQGGRVTTIKLATHHV*
Ga0103637_1000513	Ga0103637_10005131	F082104	GTCLEVAMELRLTDQEEELLREILQDHHKHLLHEINKADHYEFKVGLRHRCTVVEGLIDKLQAVHSS*
Ga0103637_1000519	Ga0103637_10005193	F003313	LDKALRIYAWFLLIVTALPAAARLAKPKELARILLVRYQNPQRRKRARIGGLIYLGLSLFAIPFLLRAEMRQERWLIMAVLVGAVSALEFLLNSRLFSEDALTRQNRIFGGVYAAMAIAVSLLLFTR*
Ga0103637_1000734	Ga0103637_10007341	F069734	MNLRVHSGHGNLGMAFGALLISIRRFTIGKPTMNSPTETLTYAFDHASVTAPTSYRGRNGATRGSRNGSAEEP
Ga0103637_1000987	Ga0103637_10009873	F100332	MYTLIRLHDGSTVEAVVLARTQFRMRLAAAGVKDAVELRYCGLDWLDEHNEPVQFGFLLAKGDEAAEAPRLARAAGGYAC*
Ga0103637_1001061	Ga0103637_10010611	F066707	MSVPIACLVLIALLAIYVPTIYIRKTNKVIDLLQQIAANSRK*
Ga0103637_1001417	Ga0103637_10014171	F036578	MPEELVNPASPPDLSIQLQRDRANQPDPTFPQSPGIILE
Ga0103637_1002212	Ga0103637_10022122	F021955	VKEVAMFQMIDERAVQPEDRKMLLYKVGIFIVAIGAVGGVLFLCLRSLM*
Ga0103637_1002435	Ga0103637_10024351	F022634	MVWQRNRYGQYSYPAFVPFNPRTPAQVAVRGTFGAVSKRWRQLTEDQRIIWCAVAKTKKSKPRLLQCGPLSGFLFFVKVNVALANRGIAQVDLPPGYESCSPPAVPNVFDTTRFDQPPVGPVLFLRANQFVAEWRDRPQEIMAGQPP*
Ga0103637_1002517	Ga0103637_10025172	F104421	MEALKGAAVAGERKAVTSRRFSLREKEKAAASREASIPRLEKTALGERNGETSGALKRGVQCRA*
Ga0103637_1002533	Ga0103637_10025332	F104421	MEALKGAAVAGERKAVTSRRFSLREKEKAAASREASIPRLEKTALGERNGESSGALKRGVQCRA*
Ga0103637_1002658	Ga0103637_10026582	F010404	MQPFTLLQRRSALRQIPAAGSTLLAYIFDAALEFQSARSASRSRPRLAFFRLTGLDHRESPVANFLS*
Ga0103637_1002917	Ga0103637_10029171	F066028	MTVAFEQAAIKVQKAQEFARLQGAIEQAFLPEKVERFLKQLDRKGIRVRNFDAVLAQRVLEGFGEANTKKYTDKHIKKSKKN
Ga0103637_1002919	Ga0103637_10029191	F090643	TMSPKAAIDLQPAVLPTLVWAAGTVHEILMQPGEQFYLFSVRKADNTTVFVRIADPHTGAPIANVTSDNVLYDLMKTAYFQKLNVQVGYRDFGPDPQAGINKLVIDRVILTQ*
Ga0103637_1002968	Ga0103637_10029681	F010175	LEVLLVVVSALIAIYADTVRHFLSLPPQKLSTWILKAKLLSVNAKLFNLCECQNNAFTTLLYITRTFVLVLVLMSLFLGGVFLEVVALRAAARGDADAYSRFHQNLDISLALVFVVVVCCRLMLLGEFLYRLRNFKGYDHRLMAEIAHLEGKLGIADDEPANSLSE*
Ga0103637_1003006	Ga0103637_10030061	F022165	MQSEKNEVLCPLCHGHGRAHRELLAVRWRSREFELALQNIADEASFGSTGGLDSPFATAGPVYSNESD*
Ga0103637_1003092	Ga0103637_10030921	F000757	VTQVLSELEFNVESCTEPFAAVKKLMSQHFDAVVVDCDNEQNATLLFKSARNSTSNQASLAVAVVEGQAGVAKAFRIGANLVLT
Ga0103637_1003115	Ga0103637_10031152	F041582	MKKWFCSVAGLSLALAGSVAALAQTPAVPPPNILNIETINIKPYEDGPYDKVAS
Ga0103637_1003202	Ga0103637_10032021	F096679	LAPRGPILTARASLRKRSGPGALIRSPYLAIESGRGEREEIGRSRKAGRAAASPAERFDPEGCKSPKGEWRLEKQPVESAGNAATGQKRRSSPDRGEPVRGVELKGRTGSGTGWQGREVAGQEL*
Ga0103637_1003251	Ga0103637_10032511	F090001	LWFQVTRFPALPTAGIHGAEHRNWKRRTLRFSAPRPPVSPTTVSKPQNAPQLSSTRGRSLVTAFPSPATALAFTRSIPGSKVPACYFASSLAASCARSARTSTTGPGLPRSRLPHRFTPVAPPTTRAPDCASRFRSPSGFLRPSGSKRSAELAARRPAFQFARSPFAPRSHFYF*
Ga0103637_1003347	Ga0103637_10033471	F017286	LVEAAGVEPASEIAVSQERSCFVRFLLDSLRVLRTDKMGQKLVR*
Ga0103637_1003433	Ga0103637_10034331	F051759	MGFAQAGVVVGEGKAVTGDRPRAGEKKGCDAPGSIDPVAGENGHWGAERRSVQRSRLRCSVPGMPVVGKAGNRITWNHKKK
Ga0103637_1003523	Ga0103637_10035231	F051759	MGFAQAGVVAGEGKAVTGDQPRWGEKKGCDAPGSIEPVAGENGCWGAERRSVQRSRLRCSVPGMPVVGKGCESDHLEPLKKKKKKK
Ga0103637_1003621	Ga0103637_10036211	F072370	MASGVRRDVGPLLPAAGFIQQRINALVRVRCPVPVETRFSIRPFALRQRRSALRQTSAAGSTFLACIFETIPKPSSTRSVANSRPRLAFLWPPGVRSILATRCRFRFRNSSPVVRPPLPVGISQSLRLVAPSLIPNVEACLCESPDFPSLPAALG*
Ga0103637_1003637	Ga0103637_10036371	F096679	VLRKRSGPGALIRSHKLVIGFGCGEREEIGRVRKAGRTAAIPGERFDPAGSKSPKGEWRLVAQLFEPAGNAATGSKRRSSPDRGEPVRVVELKSRTGSGTGWQRREVAGWEL*
Ga0103637_1003707	Ga0103637_10037071	F044296	LKLCNPGDRAPWPLCSPLRNFVRFGSMLRTAPVNSLQIGTRASERPFALLKRLPASGPPFQGQSSWPIPSAQRPNLTEPVRSLRSSTPFRLAPDSANSTRATRCPVPSERPRLFFNSPLPLGAFIPRPIKAFKLTTSREAHRIETPDLPRSPLPAFFNRPAADQCSGLVTFRSAY
Ga0103637_1003708	Ga0103637_10037081	F010404	MRPFTLLQRSPALRQIPAAGSTFLAYIFKAALEFQLTRSASRSRPRLAFFRLTGRDHCWSPVANFLF*
Ga0103637_1003771	Ga0103637_10037711	F090001	LWFQVTRFPALLTAGIHGTEHRNWKRRTLRLSAPQPLVSPTTGSMPPGSPQPSSTRSRQLVTAFPSPATAPAFTGSIPGSKVPACYFVPSLTASCARSARTSTTATGLPRSRLLRRSAPVAPSTVRAPDRSFRFRSPLGFLRPSGSKRSAKLAARRPAFQSARSPFAPRRHIYF*
Ga0103637_1003787	Ga0103637_10037871	F085728	MITDVSTVNVPLSPPETPHRKVTHYKPGLASLNLQPVNSVLQSLWSGGPGCSTKNTLFKQETSKKSED
Ga0103637_1003798	Ga0103637_10037981	F027406	LWFQVTRFPALLTAGIHGTEHRDWKRRTFRLSAPQPAGFSNGRIDALKLAAAFFHLGPATRNGLSLARNGSRFHGLHSGVKGPGLLLRSLAHRFLRPFGPNLHNRPRFAPVPAASPIHARCAFHGSRAWLLLPLPLPFGIFTSLQIKAFRESRRPPTRLPIRPISVRSPQPFLFLVSASDHRSRSATFRRLAVPLV*
Ga0103637_1003802	Ga0103637_10038021	F096679	ARTASLRKRSGPGALIRSQKLVIDWGCGEREEIGRIRKAGRPAAMSVERFDPEGPKSPKGEWRLVAQSGEPFGKAVTGPKQRSSPDRGEPVRVVEPKGRTDRGTDRRRREVAGQER*
Ga0103637_1003824	Ga0103637_10038241	F076112	VEIRGLIEIAELEAGNGFTAAISPEPGLTGESEGAVGRTDLRKVQQRIEAAGRELRSRNGGLETGSRYGGAKGRCEMQVPAGARAGDLQGVNPLSPKGAAGSRGVSAGDPAAQL*
Ga0103637_1004108	Ga0103637_10041081	F001296	MEAAERWQPLRESERPLRATGSGQEAASGEPGSIDPWAGENGQRGAERRIVRRFCSRCSMPGMPVGGEAGNQVTWNHK
Ga0103637_1004131	Ga0103637_10041311	F011395	MANWRQVVISGERKAVARCRLQPGGTRATFKALIRSSQKGRRGAEKLSPVIRLQSSEPCMPASGQAELRITW
Ga0103637_1004231	Ga0103637_10042312	F000209	MALAENTGSKQTSVELRPVDRLTLGLIGMGVIFASLGLGEAVYRLAFFEFDGATDRLPIEMMFGLAFAWMTMKVAKKIYQHRMETSARINLVWDRNHKIRHAVEAITPLPYPVNQQAIRVIREEVDRIEWALTDILPR*
Ga0103637_1004233	Ga0103637_10042332	F000526	VYIIGLVAVIMVFGIPIAGMYTYYRVRKLRSEERLAALARGLSVPMEPELSQTARSRRAGILLVSASIGYTVAFALIARAEPDAWVAAAFGVIPLAVGLGFFLDSTLVRRDLRAS*
Ga0103637_1004342	Ga0103637_10043421	F087216	FFANPEACEPIHLDQQLALDPYQTCSRCFQLIRLAAPCGPGSGSGLTDQSGKPIRSSGSYLAFHSLLFASTSSSL*
Ga0103637_1004414	Ga0103637_10044141	F029161	MFDSLADRIKQDDGPPAKASERIIRWAVVVLVAVVLFGGLYLVVQHLE*
Ga0103637_1004436	Ga0103637_10044361	F010404	MRPFTLLQRSPALRQIPAAGSTFLAYIFKAALEFQLTRSASRSRPRLAFFRLTGRDLCESPVADFLS*
Ga0103637_1004488	Ga0103637_10044881	F069502	VEAGGVEPPSEKVRREENYVRIRLMVFDLRFKAGESGEGLARLDLDRRLRTEAFGLSRKMTLTHQRFDVGA*
Ga0103637_1004601	Ga0103637_10046011	F021919	FRVTRSRSQTPRRHATAQSFATRIAGRRPVNSPPPSFERDGSMSPGSPASFPGWNRHFEAAFHSPETTARLQATISRSKLPAYFFDTLPDVRLARSDSDSPARSGSPRCAQARYRNPVARLASGISNVSADLHSPSGSFKPLRIKAFNPVPRRKVRLPSAPDCLSLPGIESILLVPIPDHRSRP
Ga0103637_1004620	Ga0103637_10046201	F009471	MTTNSGNPTEPNPRERIWFFPDKFWRATKNMPPDEVANLMAEVEGYAAAGDVQALRKYPFVMVGNPYKKKSVA*
Ga0103637_1004715	Ga0103637_10047151	F005713	FFQFEGASDRLPIEMLFGLAFAWLTTKLVKKIYQDRAETSVRINLIWNRNHKIRHAVEAIAPPPIPLEQQAIRVIREEVDHIEWALADILPR*
Ga0103637_1004948	Ga0103637_10049481	F000209	KAFAQNCGSEQSSVALRPSDRLTLGLIGMGVIFASLGAGEAVYRLAFFDFDGATDRLPIEMLFGLTFAWLTTKVVRKIYQHRMETSARINLIWDRNHKIRHAVEAITPVPHPANHQAIRVIREEVDQIEGALTDLLPR*
Ga0103637_1004953	Ga0103637_10049532	F077206	MHNYRLVRDRSAVQVFVDGIPKVTVDANQRNELRNYMVSAGLTPAEVNHKVHELYMTNTTEFTSER*
Ga0103637_1005167	Ga0103637_10051671	F010923	QLSLGRAAGSERKSGGFARWTGRRQTRLNTSIPREAKIPEGSGDRRRGRPNRVVEVQRVTGSEAAATGAIRDAVAEPKGRTGTLANLEGSEVAGWEL*
Ga0103637_1005229	Ga0103637_10052291	F027406	PPAYTALNIATGSAGRFAPRLPNRWFPNGRIDASWLAAAFFHLGPATRNGLSLARNGSRFHGLHSGVKDPGLLLRCLAHRFLRPFGPDLHNRSRFAPVPAASAIRARCAFHGSRAWLLLPLPLPFGILTSLRIKAFRGTRRPPARLPIRPISVRSPQPFLFLVSASDHRSRSATFR
Ga0103637_1005256	Ga0103637_10052561	F029408	MGNPSQLRSKLKKPQSYSLDPGIVSEIQRTKGQASASERVNQLLSYALEMERKASLSEEVAGFFADATADRQERRAFQKASLKSWARK*
Ga0103637_1005437	Ga0103637_10054371	F018692	VRFLTDQITVVASLAPRQIDRGDVWWPYMRRQKQGSTEAGPVEQEEYGS
Ga0103637_1005466	Ga0103637_10054661	F096593	MSTFGILFKAAIPMAIMGGILIAQTPIAPIGNNARLVGSIGVDRSVYFPGEGAALTLTARNAGAAPLEVASPFSAFGCFELSRLSPTGSLVPLFARPVCPLRLVEPAGSKMVLGAGEESRVTVSGDDLWPGSSASTVAHLSPICPSNHS
Ga0103637_1005842	Ga0103637_10058421	F050136	ADLHNIFSGLLNLALLAGAALYAGLVLMNYRTDGPHSRPQVDLRDPAHSAERLAVWMGVKTLTLAVHVGTPIFGMLSEASADVGEWFLSHRSHESR*