3300008727: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 338793263 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008727
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053043 | Ga0113884
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 338793263 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 105098891
• Sequencing Scaffolds: 15
• Novel Protein Genes: 22
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces timonensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F040149	Metagenome	162	N
F041827	Metagenome	159	Y
F043991	Metagenome	155	N
F047127	Metagenome	150	N
F047508	Metagenome	149	N
F055792	Metagenome	138	N
F063778	Metagenome	129	Y
F067847	Metagenome	125	N
F070224	Metagenome	123	N
F077403	Metagenome	117	N
F084362	Metagenome	112	N
F094006	Metagenome	106	Y
F097526	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0113884_1000298	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	17086
Ga0113884_1000518	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	12454
Ga0113884_1000668	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	10573
Ga0113884_1000801	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	9629
Ga0113884_1000803	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	9619
Ga0113884_1000861	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	9262
Ga0113884_1001018	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	8328
Ga0113884_1003815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3478
Ga0113884_1004829	Not Available	2958
Ga0113884_1006509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	2388
Ga0113884_1008674	All Organisms → cellular organisms → Bacteria	1927
Ga0113884_1011136	Not Available	1594
Ga0113884_1017429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces timonensis	1130
Ga0113884_1025155	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	851
Ga0113884_1028681	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	765

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0113884_1000298	Ga0113884_10002982	F047508	MLGHRLVEGRVKYPYLRDIGEYLRHSFDTEDVGWVVKWSKLRALMEHIYHLRGDTYALSKALCTVYEAVTDGVDLIEGLHEVLFFENVEDNLYAACVVRDVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELNEGELQGGAATVEDQDFHKVLYYMVRCELIPSSP*
Ga0113884_1000518	Ga0113884_10005186	F055792	MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSVKSLDLEPRIIGKTMKPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDLQTSREEGTDLLQLMGIIARKYQLFHTFVIISSASLRA*
Ga0113884_1000518	Ga0113884_10005187	F040149	VADEGAEELRWEALIKEQGIPVLFVEVVAWYDGRVSSSEILSSFGIALEREPRLTPVWHHDSEDAIHDFIYDISVPKGYALTAVRERETVVMQLLNIHRMF*
Ga0113884_1000668	Ga0113884_10006683	F018385	MMAENRWDPYAEVPIETHRDPVKDDPLIYGVNVPHFTVTVYSPDGRVNKYWNARILEDMLGYCRIACPRDGKILKFKWSDWSVYMFTHDGLNELVFMPDSGRKIITQLFDKEVN*
Ga0113884_1000668	Ga0113884_10006686	F043991	VSKKNPSVIDYFDLNGDLNEEAYEFEDVKLDEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFIFRVLEIAQGDPSNVHPDFRA*
Ga0113884_1000668	Ga0113884_10006688	F027205	VDSGSSGSSSGRCGEADFIPPGSVKGPRGSQLIERTHVASRLIVSADDILKAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK*
Ga0113884_1000668	Ga0113884_10006689	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWSAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDSQKSKFTRHTMTNEKGHQTYDWVLENVEWAADTIRYF*
Ga0113884_1000801	Ga0113884_10008011	F070224	MRRLLFLLLTLLHCTAWSQVYNAPDSLYVASGAVYIPPVSGEPIYLLASPLKSGHTPGSKIRTRDWVKVDYSDENNIITIGFGDSLVIENRFIYQADCYPKAKEYKLYHKGTGVEITKEDFDSIKFTRMPTALREIKKYKLPRTRRSSGEVDRWQHPHLFVVEHNKKADRYYKYRIALVIYMDYDHPEACIIH*
Ga0113884_1000801	Ga0113884_10008012	F070224	MKRLLFLLLTLLHCTAWSQGYNAPDSIYVASGAVYIPPISGEPIYLFASPLKSGHTPGHKLRTRDWVKVDFSDENNIIVRKVGGSLIIENLFIYYAAGFPEMKEYELYYKGTGEEITKEDFDSIKFTRMPMALREIKKYKLPRTRRSSGEVDRWQHPHLFVVEHDKKAGRYYKYRIALVIYMDYDHPEACIIH*
Ga0113884_1000803	Ga0113884_10008031	F070224	VYIPPISGEPIYLLASPLKSGHTPGSKIRTRDWVKVDFSDQNNLHIMGFGDSLILENRFVYKADRYPNAKEYELYYKGTGEEITKEDFDSIKFSRTPTALREIKKYKLPRTRRFSGEVDRWQHPHLFVIEHDKKAGRYYKYRIALVIYMDYNHPEACIIH*
Ga0113884_1000861	Ga0113884_10008618	F077403	MNTIKPLLRRLVLISLLLSAVRAIHAEERVSVHFEVRWHRERNPMDTLRRELNVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTMIEGYPRRERISDTHYVPRWSTNALRFYEERVRRHMTHQVLVWDQAWVVDLEPSIVDGLPKPRLDYQYPYANWSECAYYLQGHLYYLLTPQRGHDWFQVSFLPDHAEHSVATEAVVTESELRPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEATSLNVYLLRDQEAPTSPQGYALPDHYEGYQLYQGLVRGDSIWIEM*
Ga0113884_1001018	Ga0113884_10010183	F077403	MNTIMPLLRRLVLIILLLPSMCTVYAEERISVHFEVRWHRERNPMDTLGRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEDGSRPEKYNLTYYVPRWATYPLKGAGRSVRERRHYTHHVLLRDQAWEVELEPSIVDGQPKPRIAYGEGMDNWSECAYYLQGYLYYLMTPQLDHDWYQVTYLSEHMEYSVGMEMVGTEGTLKPFVHRLAFVPAHSRREYVYSLLAFAVIHGCWQFLLPDWEASGRLRDERIPLNVYQLRGKGSTASAPSGYPLPEHYEGYQLYRGWVRGDSISIKM*
Ga0113884_1003815	Ga0113884_10038154	F067847	MFSHIVRVKGFFDDEPKAKKLYFHLSRREMFDFIKRYDNVTNFQEWMQSAIDAEDLYTLMEFFDDLIGTSYGERQGEHFVKTPQIKESFLNSPEYEKLFDLFMENPGLVKQFYEGILPEKLLKQAKEDGKFAEVEEKIKEAELNSL*
Ga0113884_1004829	Ga0113884_10048291	F022002	MTNIYSFLSPSSVGREVVLAFGILLLALLLSLPSYAQDGRSKVPINRTISGFTLGVTTPAQARAIIQRQGGKIILEVGTHAGSKDASYTVTGLNYARRPTQTVYMFFYKGHLQSIFFIFDGWDLLEQIESELEDKYGMMIESEGMFKKKGIVDAFTSLEVVRGFEYEGDSMSKNAYIAYTDKELDRARSAEKESEI*
Ga0113884_1004829	Ga0113884_10048292	F022002	MSSRLALTLGLLLALLLSLPSYAQDGQSKEPIDRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFVFGDLKIFEQIESELENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELDRAYSAENENEI*
Ga0113884_1004829	Ga0113884_10048293	F022002	MSRRLALTLGLLLALLLSLPSYAQDGQSKVPINRTISGFTLGVTTPAQARAIIQRQGGKIIRTEGTQAGSDEQAYAVEGLKYARRSTFLVTLHFCKGHLRKIAFVFDKLDVLEQIESELENKYGMMAEGKETSKMKSKFIFDAFTHLEVVRSFKYEGHVGFEYAYISYTDLELDRAYSAEKESEI*
Ga0113884_1006509	Ga0113884_10065091	F097526	LLHAHTRALAADGNRQRLNRLTEAMRIAGEMEKAGRNEHPDPAEQKRRARWDSNLAGLQQQARMAHCEIVNADNAAVSQLTQQCEKNGSCDTAIPSPHDDGYGFTAGLRDIPLNTSQTALLWRIALLTIAEMTDTAPSLVACYLNGTGGEHLGRALVEKTVYPVTVVSNLARLLHEQHKSGQLQRDLRHIAAREPENAAVMPAVAPEPVVTLQAAEQPEITIHNPTTGATL*
Ga0113884_1008674	Ga0113884_10086743	F041827	MKHFLSALALGCLLLSCNRDLENNENNETPAPPKEKLVLLKQLSKGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKEHRYWHNYGDGETNITYQYDSQGRLVSSHAISTKFYPGTGLTPRCSIEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIEQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNHGIERIEDLRFIDNIKTRDFHNGSYWEYRYSYDKENT*
Ga0113884_1011136	Ga0113884_10111363	F084362	MSLMNCAFTVRWSDEKNKPHAKTYATEADAKRAKKWLLEHGVRSVDIAVRVNNKPAGSLKDDKPSETEAEQKGFWWEK*
Ga0113884_1017429	Ga0113884_10174292	F063778	MPETISEGAKQELIRQLQDALNLVKNADTSAHDVAAITHSAADGHQLTEVMLQEMTAARGHLKSCADQINYAISNIQAIPLDPPSGA*
Ga0113884_1025155	Ga0113884_10251551	F094006	AGERARAPLTTLSRARVAVMRSTLEPAGPTGALHEPAVSMEAHIGELQTGGIARRGLFTFGGSNVLEVAELGAEAPHAIDMYDIALCKPLSELFAEELEYAFNFGA*
Ga0113884_1028681	Ga0113884_10286811	F047127	FMKKTFAFILLSIISLAKAQQTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK*