3300008698: Microbial communities of saline water collected from the North Sea in Germany - HE327_3b

Overview

Basic Information

• IMG/M Taxon OID: 3300008698
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117953 | Gp0126208 | Ga0103619
• Sample Name: Microbial communities of saline water collected from the North Sea in Germany - HE327_3b
• Sequencing Status: Permanent Draft
• Sequencing Center: Goettingen Genomics Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 8339242
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	2
Not Available	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities Of Saline Water Collected From The North Sea In Germany
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → North Sea → Microbial Communities Of Saline Water Collected From The North Sea In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Sea, Germany
• Coordinates
  • Lat. (^o): 54.4223
  • Long. (^o): 7.6833
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000049	Metagenome / Metatranscriptome	3277	Y
F000481	Metagenome / Metatranscriptome	1089	Y
F003081	Metagenome / Metatranscriptome	508	Y
F007123	Metagenome / Metatranscriptome	357	Y
F012347	Metagenome / Metatranscriptome	281	N
F017650	Metagenome / Metatranscriptome	239	N
F047922	Metagenome / Metatranscriptome	149	Y
F049593	Metagenome / Metatranscriptome	146	N
F060355	Metagenome / Metatranscriptome	133	Y
F103310	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103619_100206	All Organisms → Viruses → Predicted Viral	1437
Ga0103619_100289	Not Available	1246
Ga0103619_100294	All Organisms → Viruses → Predicted Viral	1234
Ga0103619_100503	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1004
Ga0103619_100723	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	839
Ga0103619_100766	Not Available	814
Ga0103619_101625	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	564
Ga0103619_101685	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	556
Ga0103619_102046	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	507

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103619_100206	Ga0103619_1002061	F007123	FAASMQEFGKSDVDGEFASSSDKLDSLVKSYMDDNQLKKSEYAKAYAVVAKTDEGKSLINKTYKGE*
Ga0103619_100289	Ga0103619_1002891	F012347	MNRIKHGNVNKWTSTKAGQVIEFASSKPRHVKFEITANSNIEIWVADNNKMSDAVLVGTSNGKTEIQYTAVATTYVQIKAEKSADVFVNIPDLDQAVENTDNPSFTSIEPRVNNSTEFDRMMTFMKHNEQQRNAQLEAERAALRAEVAKIKAEAETVVEAPVEAETEDAGETPE*
Ga0103619_100294	Ga0103619_1002943	F047922	MTPQEIVAHKNKWRMASYFVSHTHSDLRSEATQWCKDHCFQWRYDIKHFTDIYGDTVRFELEEDFNAFNEWYQERMYG*
Ga0103619_100503	Ga0103619_1005031	F003081	MPEPGLVIELREEMFNDTRFGAEVFYMHVRGVDTIFVLSYLHILKKIYLKNYVSAESDG*
Ga0103619_100723	Ga0103619_1007233	F060355	MKIKDDILEKWEQGWTIYDIAEYWNTPVENIMKILGIQENPFSYELH*
Ga0103619_100766	Ga0103619_1007663	F049593	MDKELQQYYETLLDLFSSQGWKQYVEDISDNMDLLQDITTIPDEKQFWFRRGQIEALQRVLSYESAIKNSYEDFEKEQYA*
Ga0103619_101625	Ga0103619_1016251	F103310	GEAGSLLIGLLDAGGLLVALEFDMAVGGKVGRNSTMGSVSASSSGDGSLADGMVDNASLDIESFLLSVGLKVLEEGLNSLDGLLGPSSKLVLEDLALGVTADTTGVHSERNDGFFSEASVHVLDGLVNFKTLACAGNIVRVLVMDSQVTDLTDGGFSGLSGLSGVLYHCKLIPIY*
Ga0103619_101685	Ga0103619_1016851	F017650	INLKTMKFFALALAATVSAVTIRGDFFEARDNGTGPLDKKYERVLPVQFADSSDDLFMRSMIMNYAREGKNEDGSPNGVFTMTEAQTRGASAEVLSTHKKMSAAETKEYLQTYFPRTWAHFDVNRSGSVEVIKMPQVMRFLASDQQMYLW*
Ga0103619_101994	Ga0103619_1019941	F000049	MTFWQENYTFIKDVYDMRHQKMAEWMENVEKAIARIMADKVYTSAEFKRERDNFHALCKDLERAEVKKWLAQILEILMAERAKDQRKKESDLLDALILKHEELIPTVTKTQVMVDLYWKCYAYGDELKPHIEFLDGIMMSSTREIAP
Ga0103619_102046	Ga0103619_1020461	F000481	KPHIEFLDGIMMSSTRDIAPSCVENVDELIERQEKSLNQLETKRGIVKDLIEKGKKIMENPDKPRFLESHVTHIEEGWEDTRNKASDRLRLLQETKDAWVGYAEDNETIATMFEKAEDEMKKIKKRYNLQAAMDDLKKRQDIFKKDNDKITGLFDAIQNKHYKCMCIT