3300008594: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158944319 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008594
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052965 | Ga0111090
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158944319 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 114510135
• Sequencing Scaffolds: 21
• Novel Protein Genes: 24
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
All Organisms → Viruses → Predicted Viral	3
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F030786	Metagenome	184	N
F042387	Metagenome	158	N
F049707	Metagenome	146	N
F051212	Metagenome	144	N
F051214	Metagenome	144	N
F061925	Metagenome	131	N
F063777	Metagenome	129	N
F063778	Metagenome	129	Y
F066860	Metagenome	126	N
F067847	Metagenome	125	N
F070224	Metagenome	123	N
F074985	Metagenome	119	N
F077403	Metagenome	117	N
F081454	Metagenome	114	N
F090516	Metagenome	108	N
F097527	Metagenome	104	N
F101359	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111090_100096	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43929
Ga0111090_100157	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	30412
Ga0111090_100523	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	14723
Ga0111090_101150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	9108
Ga0111090_102273	All Organisms → cellular organisms → Bacteria	6017
Ga0111090_103041	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	5012
Ga0111090_103406	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	4652
Ga0111090_104430	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3917
Ga0111090_104972	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3631
Ga0111090_106189	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	3105
Ga0111090_107458	All Organisms → Viruses → Predicted Viral	2702
Ga0111090_107581	Not Available	2665
Ga0111090_109013	All Organisms → cellular organisms → Bacteria	2327
Ga0111090_111520	All Organisms → Viruses → Predicted Viral	1923
Ga0111090_111608	Not Available	1908
Ga0111090_111801	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1884
Ga0111090_116479	All Organisms → Viruses → Predicted Viral	1424
Ga0111090_127374	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	894
Ga0111090_128782	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	853
Ga0111090_128817	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	853
Ga0111090_132183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	767

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111090_100096	Ga0111090_1000964	F049707	VVSEYKSPHNDGHDPYILIWEYGSEVQQEEFVERWSEYEPDTGWTVWHFRLADGRVMTFRALEWEQRDDVNHLTTIYFTPKQKEN*
Ga0111090_100157	Ga0111090_10015718	F077403	MCAVYAEERISVHFEVRWHRERNPMDTLRRGLDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSEQAYYLQGYLYYLMNPQQAHDWYQVSYLPDHAMHSVATEAVVTEGELHPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWQASARLRDEGTSLNVYLLRDQEAPTSPQGYALPDHYEGYQLYQGLVRGDSIWIEM*
Ga0111090_100523	Ga0111090_10052320	F070224	MKRLLFLLLTLLHCTAWGQVYNTPDSIYVVSSGVYIPPVSGEPIYLLASPLRPVKTRGSKIRTRDWVKVDFSEDNNFMVVGSGDSLVIENFFAYYAAGFPEMKEYELYYKGAGEEITKEDFDSIKFTRMPTALREIKKYKLPRARRTTGEVDRWQHPHLFVVEHDKKAGRYYKYRIALVIYIDYDHPEAHMIH*
Ga0111090_100523	Ga0111090_10052321	F070224	GEPIYLLASPLRPVKPRGSKKRTRDWVKVDFSDENNIIIVNVGDPLVIENFFAYYAAGFPEMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRTLGEVDRWQHLHLFVVEHDKKAGRYYKYRIALVIYIDYNHPEAYTMH*
Ga0111090_101150	Ga0111090_1011505	F063778	MPETISEGAQQQLLQQLQDALGLVKKADTCALDVAAITHSAADGHQLTEVMLQELTTAREYLKSCVDQIEHAISNVKAIPLDPPPED*
Ga0111090_102273	Ga0111090_1022735	F051214	MPGKIVAHDTHLQIDTEFIELKDCFEAFRRGVEYREKNDIDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKDEWIA*
Ga0111090_102273	Ga0111090_1022737	F018385	MMAEYENQWGPYKEHSIEKDRDPVLDVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVLMPGSSRKTISRLFHEEVK*
Ga0111090_103041	Ga0111090_1030415	F063777	FLCIPFLFIFGILLLIGWGIYSGISSIISAVKEDFFGIKEKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEYLDDGYVFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNRLKNQLISFNKNTGKITVLADIKDFFWLDFDSETKTINGYNNKEQIEIAISE*
Ga0111090_103406	Ga0111090_1034061	F030786	MKRTKIHKVVFQMLVVMIVTSSLQLLLKNGSATKGGNATGAKKANKISFADITDGDKSKVVAIKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPRLFLLYQSLKVDC*
Ga0111090_104430	Ga0111090_1044301	F090516	ENDEVISLDKSLEFTDVIVGIGFLPHDMSENTDFKKKTLEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYFDLDNDAGTGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDRLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQEVIDENKERLLKALEEYTPDEYEGISEAMAEMMEYSHKIQRAEPMIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLSQYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK*
Ga0111090_104972	Ga0111090_1049725	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYHLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTTKIIIKTNKKEYSKTNIQNNKTWDYITKQVIDIKFSQLYNHLNLEK*
Ga0111090_106189	Ga0111090_1061894	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLFVAVTFGIAEDREETTEDVAI*
Ga0111090_107458	Ga0111090_1074585	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMNQVQQDPKYKELDSKLKETELKNL*
Ga0111090_107581	Ga0111090_1075813	F070224	MKRLLFLLLTLLHCTAWSQGYNAPDSIYVATGAVYIPPISGEPIYLFASPLKSGHTPGSKIRTRDWVKVDFSDQNNLHIMGFGDSLILENRFVYKADRYPNAKEYELYYKGTGEEITKEDFDSIKFTRMPTALRELKRYKLPRTRRFSGEVDRWQHPHLFVVEHDKKADRYYKYRIALVIYMDYDHPEACIIH*
Ga0111090_109013	Ga0111090_1090131	F061925	DLKICELFCSSTTDYIDWKNPESMDDIPYDARFYTDNKKTIYIAINSFSKNIFSALNLILAKHDYHLTDCDTDEEVTLEHIFRSVI*
Ga0111090_111520	Ga0111090_1115201	F074985	FSRMSSGLPTRSVISEEDTMELTDGGWYKTPRIIKGTDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRIYDVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFRKMTPVAFTHNNQSWTVMGLALASAETGWFIYLKRRDSDFMTRLNFNRDQKVLYNPISGSWSLDDLKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLLDHIKAMHID*
Ga0111090_111608	Ga0111090_1116082	F022002	MSSRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIIQEVGIHAGSNDVSYIVSGLNYARRPTQTVAMFFYKGHLHSIDFIFDGWDVLEQIESELEDKYGMMIESEGMFKKKSIADAFTSLEVVRTFDYEGHSMSKNAYIAYTDLELERARSAEKESEI*
Ga0111090_111608	Ga0111090_1116084	F022002	MSRRLALTLGLLLALLFSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYERCPTLSVRLYFYKGHLRSISFAFGDLEILEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEDDGHVGFAYAYISYTDLELDRAYSAENENEI*
Ga0111090_111801	Ga0111090_1118011	F081454	MKAFKLVLLLFITSASLVFGQEKRYFFKYEYHPNSKYLIKLKTDMDGGYKFVGSKEVIDKIGMNEVEMKMNMNIGSTISTQKKQDNNIPFVLEYTDYISEAEINGEKVNRKIPIQGVKLRGDIINGKKMEVKNVEGNIDEDTKKILTESIKQFSAIDTDFPKEGLKIGDSFDMVIPYKQSIPNAGDIEMKMNVKYKLLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKT
Ga0111090_116479	Ga0111090_1164791	F051214	PGKIVAHDTHLQIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIV
Ga0111090_127374	Ga0111090_1273741	F042387	MKKIILFFMAVFFLVSCSRENDKMTDETLANNAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGNGDKVVFVYEKNFITSKIRYSQAGEELGKTNYQYSNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSGVSVNENVKYYSESYAYNLRDENSTHTYVLNGENITKIHHEISKNVPSGHSYLNPNNMVVIDEEVAYDAKNSPYKNIKGFSALATEFCGLDKDENTIADYLNYRWVSHNPTLIQKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNIDNQTITTMVYEYNK
Ga0111090_128782	Ga0111090_1287821	F101359	FKMKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSAANGSVTYRDANGNKRKIYLRSGMSENISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQGITDSYKETVK*
Ga0111090_128817	Ga0111090_1288172	F074985	MMELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFSVSNFDELYIDQTFRKMTPVAFTHNNQSWTVMGLELASAETGWFIYLKRRDSDFMTRLNFNRDQKFLYNPISGSWSLDDPTQEIKDLEEIKQALRADAILDVTVSGVPMRLIRVQEIAKGVLFFVFQDEEKNKRYYYNRSAIKLRIVT
Ga0111090_132183	Ga0111090_1321833	F097527	MIYFKMEKIGNSTYNKEKKTRSENLVFITIPAAGVEPARPCGPWALSLARPPIMPR