NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008572

3300008572: Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France - CSM2012-AB-F-N



Overview

Basic Information
IMG/M Taxon OID3300008572 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0117973 | Gp0126364 | Ga0103775
Sample NameMicrobial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France - CSM2012-AB-F-N
Sequencing StatusPermanent Draft
Sequencing CenterCentre National de la Recherche Scientifique (CNRS)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size24190424
Sequencing Scaffolds12
Novel Protein Genes14
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available6
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetes incertae sedis → ac1 cluster → Actinobacteria bacterium BACL2 MAG-120820-bin501
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities Of Cyanobacterial Mats From A Recreation Lake In Champs-sur-marne, France
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Microbial Communities Of Cyanobacterial Mats From A Recreation Lake In Champs-sur-marne, France

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biomefreshwater lakemicrobial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Surface (non-saline)

Location Information
LocationChamps-sur-Marne, France
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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