3300008550: Planktonic microbial communities from coastal waters of California, USA - Canon-21

Overview

Basic Information

• IMG/M Taxon OID: 3300008550
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117987 | Gp0126513 | Ga0103924
• Sample Name: Planktonic microbial communities from coastal waters of California, USA - Canon-21
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hawaii
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 4899064
• Sequencing Scaffolds: 20
• Novel Protein Genes: 24
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	1
Not Available	12
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium ADurb.Bin331	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Planktonic Microbial Communities From Coastal Waters Of California, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000055	Metagenome / Metatranscriptome	3096	Y
F000075	Metagenome / Metatranscriptome	2622	Y
F000237	Metagenome / Metatranscriptome	1498	Y
F010914	Metagenome / Metatranscriptome	297	Y
F019484	Metagenome / Metatranscriptome	229	Y
F027881	Metagenome / Metatranscriptome	193	Y
F042865	Metagenome / Metatranscriptome	157	N
F043390	Metagenome / Metatranscriptome	156	N
F045749	Metagenome / Metatranscriptome	152	Y
F050360	Metagenome / Metatranscriptome	145	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103924_10023	All Organisms → cellular organisms → Bacteria → Proteobacteria	2967
Ga0103924_10173	All Organisms → Viruses → Predicted Viral	1553
Ga0103924_10236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	1396
Ga0103924_10239	Not Available	1389
Ga0103924_10282	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium ADurb.Bin331	1312
Ga0103924_10365	Not Available	1201
Ga0103924_10496	Not Available	1093
Ga0103924_10564	Not Available	1052
Ga0103924_10765	All Organisms → cellular organisms → Bacteria → Proteobacteria	953
Ga0103924_10935	Not Available	890

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103924_10023	Ga0103924_100235	F074867	MSSRGITDIILNGEAFELHPTFSNLDKLETVLNKGAIGFLRQDLSSGAFKTGDVVSIIQVCAVPANGRKFPNWWNRDGVGEAVISAGLVGITTSVTHFLAKAFTAGTETDIKTVGSESDEKK*
Ga0103924_10023	Ga0103924_100236	F078696	MKLWSSAVTYLNVQPSEAWNLTPFEFWALWDTHLEKMEISTGKAYTRPMTVDEFNELSDFLDELHGDN*
Ga0103924_10173	Ga0103924_101732	F058997	MIIYKGQQMTVREACQLMGIDCDDFMVWCKKFALQNYGYALNYYKRTLKFKK*
Ga0103924_10236	Ga0103924_102361	F050360	MSNAEFGAYQDMLRQCEESMFGGDVQDDDEQWHDVKRLLPPTSHMIWAACPNVVLCAYQTFLLYLDSDGQWRDNTGCLFSRKVNFWQYADVPECNISC*
Ga0103924_10239	Ga0103924_102391	F027881	LTVARSERVRGVLTHANCTKIKFNLSSVRVSNSLMTFIKFV*
Ga0103924_10282	Ga0103924_102823	F051119	MTIKEAFEQFDALRVANALGLEYGVVCKWRDREQIPVFWRTRFVNLMNHHGVSISLHDLAGWIK*
Ga0103924_10365	Ga0103924_103652	F087089	LIKGIFGDTVLKKFDRVLVDAKRDRLGSTLGGVGGSQTYGRGATDKIMSQSIWKLDGAGASLGALLGTMLGGVGTMGGALGGAATAHAVKVLNMKQNALTSKAMLDPKYAAELLKKQIAPTQYKRGALESLKKNIAPSTIPAQDKNQ*
Ga0103924_10496	Ga0103924_104961	F010914	MIYNIMTEQDGKFVATGETVECEFEETQEVVDELQVEHGRCCALEAVSE*
Ga0103924_10564	Ga0103924_105642	F019484	CSFFYFLTILGGSLKKIAKKITTNVPISKKVYTNASII*
Ga0103924_10765	Ga0103924_107651	F043390	MMSYQVKTEDLTKVISLTLTAEQLETIAGALEMYCIGLAEHNDPHLKYAADAQEAIIEVLESNFSVEP*
Ga0103924_10935	Ga0103924_109352	F050360	MTNSYDNWFQDMLRDCENGLFGGDVHDESKDDVSDWTDVKTYLPEFSRMVWAAVPNVIICAHQTFLLYLDSDGQWRDNTGCLFGRRVNFWQYADVPECDISC*
Ga0103924_10966	Ga0103924_109661	F000237	ESDG*LLGGYAFFFFHYIIFLGISLSANHLSDLTLTIGANIF*SLFNNAYKTYYIIFTNKHLNTDQLTRFMIFHYFTPFYYIYLVKMHVLFCHES*DTDSGETTFEDKSY*TLYVFVYFFLHHFNGATVNYFFFER*NISELDEVRFYGVAPH*YFRPLMGILVISPTHYEGLM*MGLFLGLLAFLPLVYNLYNTFSKYVATIPMQNSILQTTTFIIFMLSLYCANSMLPCGRYYYEPEGGYVGNP*VKFSYQYMYLYLG*IVHHLDLIDHYIFKFTQVLLRKLQSNKLKTTQ
Ga0103924_11533	Ga0103924_115331	F051119	MKISEAFEKLDALRVANALGLEYDTVCKWRDRESIPAYWRVKFVNLMNHHNVAISLHDLAGVIK*
Ga0103924_11828	Ga0103924_118281	F054846	MSNELNLNDLGLGDNSQSAINEKMPRRGAEGRGQSRESRKSLSEHDTARKPERVPMYAQRTMIDTTLIPEGFHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPLELYEADQEAKAEKAKEQTATIFGKQRNDPDFFSRDENGRDTLASRG
Ga0103924_12635	Ga0103924_126351	F000075	LAVVSANQLESMNEDDLLVSLESNLNSALSSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0103924_12981	Ga0103924_129812	F058997	MIIYKGREMTVREACALMGIDCDDFMAWCKKFALQNYSYAMNYYKRTLKFKKG*
Ga0103924_13196	Ga0103924_131962	F096902	MSGGSLDYVCYKVGDVADTIDARAKTSLQKAFAAHLRDVSTALHDLEWVFSGDYGDGDEVAALRKVVNKEMELNAATEQANIALKELQSVLGISV*
Ga0103924_13234	Ga0103924_132342	F042865	ADDFNKRIWWQFMQSVVSDLPLNGNVAPENTVRANKSCLYIETTGGTAVLWFNPNGNGSATGWIVK*
Ga0103924_13455	Ga0103924_134551	F000055	LGAVSAVEVGKAGTSGDWFVDKTPAPTATGTASSGYFGADEDDVMNNIFNKDGCRKACAEILLVTKQVSEAKMEAYMAEFFPRTWAKFDLNNTGEIDITESHTFMRALLGRLNQFVLAPGSLTDIKV*
Ga0103924_13477	Ga0103924_134771	F058934	RPVMRQFSYPNSQFTNILGGASIGWKLNVYNTGTTDFASIYSNLAQTTPTANPVIADADGFLASFYWTGTVDVVLTDENNNLIDSANGIQDLVSTINAVVVAGNISLPYGAASGSGDTITATLPITSDFSDGGMLIVRANAANTGAANTPNLQVNSYASRRIKKIGGVALIANDIVSGMNMILVYDLA
Ga0103924_13695	Ga0103924_136951	F045749	LLLTNYKDALPITNDDRRFCVMYGRIQNESELFDYFGGRDEAGEYFENLFRESELHAGAIKTFILNHTISEDFKPSGRAPDTVSRRLMIQASVSPEQCTVEDLINKHECGVVNGRILDVTWFKSLCEGEGDVLPQSRTLAHILNDMGYQQITGRRIKIKKTRENHYIWFKAKKGVDEESVKNEV
Ga0103924_14119	Ga0103924_141191	F090440	SSLGGNEISGLKLATDLRLKRVYHCRITDVGEDDDLRIIIRKSIGG*
Ga0103924_14443	Ga0103924_144432	F077283	MNNAEQVAYQSMLRDCENSMFGGDVQDDVETPVHVWIDAKRESPIAAQMCWVAVPNVVTCRHQVILCYIDSDEQWRDAGGVLMFRRVSFWQYADVPECEVLC*
Ga0103924_14476	Ga0103924_144762	F063325	MSELLANSMSSWTAGESSEWNNCSMSKDVIHVTDCSLQTQAFASASSLICRLEMSSQIVNSA