3300008520: Human stool microbial communities from NIH, USA - visit 1, subject 764487809 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008520
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052925 | Ga0111044
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 764487809 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 203612297
• Sequencing Scaffolds: 17
• Novel Protein Genes: 19
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Lacrimispora → Lacrimispora saccharolytica	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F026489	Metagenome	197	N
F026592	Metagenome / Metatranscriptome	197	Y
F029444	Metagenome	188	Y
F051210	Metagenome / Metatranscriptome	144	Y
F051936	Metagenome	143	N
F052660	Metagenome	142	N
F055775	Metagenome	138	N
F067844	Metagenome	125	N
F067845	Metagenome	125	N
F068811	Metagenome	124	N
F071326	Metagenome / Metatranscriptome	122	Y
F073656	Metagenome	120	N
F076190	Metagenome	118	Y
F078004	Metagenome	117	N
F089054	Metagenome	109	N
F090515	Metagenome	108	N
F105374	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111044_100008	Not Available	399527
Ga0111044_100140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	123747
Ga0111044_100289	Not Available	86290
Ga0111044_100618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	53193
Ga0111044_100790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	44440
Ga0111044_100810	Not Available	42598
Ga0111044_101224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	30269
Ga0111044_102632	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	13717
Ga0111044_103462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	9979
Ga0111044_103535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	9704
Ga0111044_103553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	9656
Ga0111044_108648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Lacrimispora → Lacrimispora saccharolytica	3345
Ga0111044_109994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2789
Ga0111044_111455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp.	2347
Ga0111044_113630	Not Available	1881
Ga0111044_116745	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1429
Ga0111044_124131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	864

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111044_100008	Ga0111044_10000847	F051210	MNTQYLQMMQTPSMMEALINSSVSAEDANLRSREYAKMFSRNDEMKDLFGLGNAGNLLQKTFSGYAETPLLSTQYFNASVASYVSSFAGYMSIERDFDQPNGLFYWFDVLGVTDMRSVIPNLGPDNYQDIQAMGNFTLNITPTTNADYSSLIGRKIIPGTVRVKIATATEKFELIDNGQGAFMAVAGKISNGTINYLNGRVEFTLATALAGDAATETITIVGKEDVTGTPCNTIGASNAHANDKRFIAKMQQLGLATVPDMLVAEYNIAALGAMKKATGSDMATFLFTKLRELYTKVINYKLVSTLEEGYNGNVMADLDLTQGAMTGQFMDYRSRVDLFDAYLINVESALATKAVKGVDVTTYVAGNMASNQFQKGGMIGKWERNTKMTYINDLLGWYNGIPVLRSTDIAEAPGEGTFYAIHKTKDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGTKYMAPELVQKVTFKFGI*
Ga0111044_100008	Ga0111044_10000865	F071326	MADMISKNLDKANRLYSIGMKNIKLQLKLLGTEFVVLRPKSNSKWKNVFGGTYSSSSTLENDYDQFTTILILNQNELRDVWNRNRDNLEVYTDDGSLEVGDELQYTRGKYTFRFKISLKMGYSEVAEVFYVYTLNSIIETLDM*
Ga0111044_100140	Ga0111044_100140113	F013656	MGKIYKEPNKSEMETTINVLYSENILSIYTNKVNLQKQLNKLLGAPTKEDKIKRSIAGSRWNISLDEKTKIQKIILKANIYEL*
Ga0111044_100289	Ga0111044_1002892	F089054	MLTKGKFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELRSYLRYPNQEINNNHLHSQYIRLQIREILQIPLRDITIIDIIPLP*
Ga0111044_100365	Ga0111044_10036558	F078004	MLRHTLIITIINALYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF*
Ga0111044_100618	Ga0111044_1006183	F067844	MNTLEAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSAGAAVITPQHRSYRVPQGSPQVFGGP*
Ga0111044_100790	Ga0111044_1007902	F013656	MKKIYKEPNKSETETTINVLYSENILSICTNKVDLQKKLNKLLGEPEKEYKIKRSIAGSTWNISLDDKTKIQKVILKANIYDM*
Ga0111044_100810	Ga0111044_10081054	F055775	MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVKKEVEKKISHARVVSWLVDTTGDSPKYTIHIINANSGAVAAIALN*
Ga0111044_101224	Ga0111044_10122413	F052660	MCILRVLPEKTSERIGQERAGTEWTVVKSKIRLCIRNRSYGRFLHGGILMGIALPIPSHRAKSHDFAYWWPAAAGHSRSADALPGKSNS*
Ga0111044_102632	Ga0111044_10263212	F105374	LRPGFGAAENIRYLVLSKGVFAMKKRLVLLVALCIWMVVAAQTPYGEMPERFRPDTLPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVARSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP*
Ga0111044_103462	Ga0111044_1034629	F068811	MDQDESEHNICSNREGLCPGKKQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI*
Ga0111044_103535	Ga0111044_1035354	F029444	MEVSEQLTGFELEDLMSWTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGFDRPKKAAPFFNF*
Ga0111044_103553	Ga0111044_1035531	F026489	GGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKQRATPEKTEDSRLFGVKIF*
Ga0111044_108648	Ga0111044_1086481	F026592	RLRTASPQGIAALAVQGGVATLTERSDATFAGKQFSSADRE*
Ga0111044_109994	Ga0111044_1099945	F090515	GRVSCLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS*
Ga0111044_111455	Ga0111044_1114553	F076190	SVKNVFTAASRVSGRVWSLVRITVPNDLKFVRIRVEKPQNNSLYPYFQREPL*
Ga0111044_113630	Ga0111044_1136304	F051936	KQEGTGQVLFFLLALRGKAFGFSGLSETAVMTPVIINFSLLLIIR*
Ga0111044_116745	Ga0111044_1167451	F073656	MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRSDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFADPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAQRGGENKTRDAG*
Ga0111044_124131	Ga0111044_1241312	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMSHTDDLNDFLYWSGCYGVPDDVTVALLLDDSAAMTARLYAPQADSAAAELLDDAAGHSELGAAFIDYNGTAYVVAVFR*