3300008144: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764143897 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008144
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053133 | Ga0114284
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764143897 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 179210946
• Sequencing Scaffolds: 21
• Novel Protein Genes: 26
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	9
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F030786	Metagenome	184	N
F040685	Metagenome	161	N
F042387	Metagenome	158	N
F045567	Metagenome	152	N
F051212	Metagenome	144	N
F054111	Metagenome	140	N
F057446	Metagenome	136	N
F059076	Metagenome	134	N
F061925	Metagenome	131	N
F061926	Metagenome	131	N
F063778	Metagenome	129	Y
F064818	Metagenome	128	N
F070224	Metagenome	123	N
F077403	Metagenome	117	N
F080165	Metagenome	115	N
F084342	Metagenome	112	N
F090516	Metagenome	108	N
F097490	Metagenome	104	N
F097525	Metagenome	104	N
F097526	Metagenome	104	Y
F101358	Metagenome	102	Y
F101359	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114284_1000001	All Organisms → cellular organisms → Bacteria	875350
Ga0114284_1000236	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	52090
Ga0114284_1000254	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	49929
Ga0114284_1000309	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	44989
Ga0114284_1000838	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	22560
Ga0114284_1000913	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	21350
Ga0114284_1001070	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	19153
Ga0114284_1001218	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	17372
Ga0114284_1001366	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	16156
Ga0114284_1001626	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	14295
Ga0114284_1001652	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	14049
Ga0114284_1001671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae	13953
Ga0114284_1001740	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	13452
Ga0114284_1001963	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	12335
Ga0114284_1002035	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	11995
Ga0114284_1002852	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	9272
Ga0114284_1005574	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	5123
Ga0114284_1006791	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4260
Ga0114284_1008432	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3461
Ga0114284_1012073	All Organisms → cellular organisms → Bacteria	2411
Ga0114284_1017315	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1674

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114284_1000001	Ga0114284_1000001137	F101358	MTEKHSASLPPRQEHLLTQPITTDGTPKERTTHPDTHSIPKRQDVPRHLWNVLRSSGQLDEGWIDTEIIDENGVVLVRMTKPVHRSNIHQLEKCVPLAVLQEQNLDFTNAYLQRAYGVTMEEGGLQPVADITHATTSSQEQQTEVLLAQDEKYDRTGTDGEGNRQSVAGLAKAARLDTVVDNNLLVERVLGRVE*
Ga0114284_1000001	Ga0114284_1000001883	F063778	MPETISEEAKQELIRQLQDALNLVKNADTSAHDVAAITHSAADGHQLTEVMLQEMTAARGYLKSCADQINYSISKVEAIPLDPPPED*
Ga0114284_1000236	Ga0114284_100023624	F061926	MIKTAKHIKTFLASMLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS*
Ga0114284_1000254	Ga0114284_10002542	F077403	MSAIYAEERISVHFEVRWHRERNPMDTLRRELDVSYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSERAYYLQGYLYYLMNPQQAHDWYQVSYLPDHATHSVATEAVVTEGELHPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWQASERLRDEDTSLNVYLLRDQEAPTSPQGYALPDHYEGYQLYQGLVRGDSIWIEM*
Ga0114284_1000309	Ga0114284_100030920	F042387	MICEVNGITSRKFNKKRYFMKRIILFFMAGLFLVSCSRENDKMTDETLANGTKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGEKIVFVYERDFITSKIRYSQAGEELGKTNYQYNNGKLSSVIDESVISDSGIQYKRVVTREYSYNGSEVSVNENVKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVSNGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFPVLAVEFCGLDKDENTIADYLNFRWASHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVTTMVYEYNK*
Ga0114284_1000838	Ga0114284_100083817	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSTANGSVTYRDANGNKRKIYLRSGMSENISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYKGQDFTDSYKETVK*
Ga0114284_1000838	Ga0114284_10008384	F040685	MKKLLFKLFFALAFTSISLHGQEKIQQVEVHIFGGMALYSRQYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWEAFTKKINLDKFKKLRDGPSQQAFDEHDEIIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKSIYE*
Ga0114284_1000838	Ga0114284_10008385	F051212	MKKFFFIFVLCWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKYSKLYNHLNLEK*
Ga0114284_1000913	Ga0114284_100091312	F059076	MTNKILLLGLLLGGISTNAQVINETKAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDAPIYSKNVRSDMDADLGGNTATTTNYTDYRPLVVDKVGDVYQGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPGAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQDFLQKLE*
Ga0114284_1001070	Ga0114284_100107013	F061925	MSWEYSLNLDSEESASLVVMDLKFCKLFSSSTTDYIDWKNPKSIDAIPYDARFYTDKKKTIYIAINSFSKNIFSALKLILAKYDYHLTDCDTDEEVTLEHIFRSVI*
Ga0114284_1001218	Ga0114284_10012187	F030786	MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGYTTKGRNAMGTKKISLADITDGDKSKVVAIKVKYLDDDGADKIFENNNNRILNTINSQRISFDSQSAEYSKPQLFLLYRSLRVDC*
Ga0114284_1001366	Ga0114284_100136613	F090516	MKSNLSTELFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTLEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDVFYNRMYMFGIHCFNGDFNVTYYDLENDAETSDYYKEYELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLKALEEYTPDEYEGVSEAMVEMMEYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLYPYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK*
Ga0114284_1001626	Ga0114284_10016267	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKLLYLSASFVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYEDKKRKIDGFSQEEAEQIIKFLMNNR*
Ga0114284_1001652	Ga0114284_10016527	F064818	MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYSRDVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDNTGHLCPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLPLNDERVQGLFEYDNMVTKNECKLFSPFGLIFGKKDYQQAAKQRILQRK*
Ga0114284_1001671	Ga0114284_100167113	F097526	MQHFSAQPDETTAIAPYTQDGYRRLCERLDDDTVAALLHAHIRAFAADGNRQLLKRLTDAMRIAAEFEQACRNENPDPAEQARRARWDNQFRELQQQARMAHCEIVNADNAAVSHLTRQCEKNGSRDTAIPSPHDDGYGFTAGLRDFSLNASQTALLWRMAVLTIAEITETTPPLVASYLNGTGGEHLGRALAGKTVYPVTVVSNLAWLLHEQHKSGQLQRDLSHTAKLLRLTEVAEMRGAMPHRAVWQADNPKSRQSTLEPGE*
Ga0114284_1001740	Ga0114284_10017409	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFFELLGLLEWFEQISANQEKPAEIGFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYQLTFSLDDKTLAMIIKELGEAVTSFKKV*
Ga0114284_1001963	Ga0114284_100196310	F022002	MSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVQAGSKDASYIVSGLNYARRPTQTVDMFFYKGHLHSIYFGFDGWDVLEQIESELEDKYGMMIESEGMFKKKGIVDAFTSLEVVRTFDYEGHSMSKNAYIAYTDLELERARSAEKESEI*
Ga0114284_1001963	Ga0114284_10019639	F022002	MSSRLALTLGLLLALLLSLPSYAQDGQSKEPISRTISGFTLGVTTPAEARAIIQRQSGEIEETQAWSDEVVYAITGLKYERCPTLSVRLYFYKGHLRSISFTFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELDRAYSAENENEI*
Ga0114284_1002035	Ga0114284_100203514	F097490	MNVFCKIILPLLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPGVSIMAETLYHIRGEMIEGQIHHKKIDSIVCSVCIWDDICTEEYYAMRDIVLLPKKSIKKIRYKYNEEEYRKIETVHIDFPYNGYSNEIGKKMHFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0114284_1002852	Ga0114284_10028525	F054111	MNKSLESITHEEFLKLMERLKNLQEFTFLEYTMAPEADIFYFNFMEKTMKIKWDLDYGLFLETESLSTADRDLFLNILDKEILFLI*
Ga0114284_1005574	Ga0114284_10055744	F070224	MKRLLFLLTLLHCTAWSQVYNAPDSIYVATGAVYIPPISGEPIYLLASPLKSGHTPGSKIRTRDWVKVDFSDQNNLHIMGFGDSLILENGFVYKADRYPNAKEYELYYKGTGEEITKEDFDSIKFSRMPTALREIKKYKLPRTRRFSGEVDRWQHPHLFVIEHDKKAGRYYKYRIALVIYMDYNHPEAHIVH*
Ga0114284_1005574	Ga0114284_10055745	F070224	MRRLFFLLLTLLHCTAWSQVYNAPDSIYVAGGAVYIPPISGEPIYLLASPLRPVKTRGSKIRTRDWVKVDFSDQNNLIVRKVGDPLVIENFFAYYAAGFPEMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRTSGEVDRWQHLHLFVIEHDKKADRYYKYRIALVIYIDYNHPEAYTMH*
Ga0114284_1006791	Ga0114284_10067915	F084342	VSGQCGAKLFLLGGYLAIPIRRPFFAQALKETLGQERSLGDAYDKDYQNEKALQWIHRRHILGICKEE*
Ga0114284_1008432	Ga0114284_10084323	F045567	MVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVNEDTLPTLGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR*
Ga0114284_1012073	Ga0114284_10120731	F097526	MTADNKTPITPYTQDGYSQLCERLEDDTVVATLRAHIDTFAADGNRALLKRFTEGLRIAGEMEKACRVGYPTPAEEERRERWDSNFKQLQQHARMAGDQITNADNAAVSRLTAQCERNGRSDTELSVAHDDAYGFAVALRDIPLNEKQTALLWRMAVLTIAEMTDTTPSLAADYLN
Ga0114284_1017315	Ga0114284_10173152	F080165	MKNKKFLLTILLSLTACNNKTKTISTLDLEKVVINYKELPASVKKKVFPPNNGLITFGEENREEYESFQETNNPKKYEYYTKQDPQLAWVHDPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR*