3300008103: Human stool microbial communities from NIH, USA - visit 2, subject 764892411 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008103
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053104 | Ga0114180
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 764892411 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 173077103
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Lacrimispora → Lacrimispora saccharolytica	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F073656	Metagenome	120	N
F076190	Metagenome	118	Y
F105374	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114180_100099	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	133829
Ga0114180_100206	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis	89224
Ga0114180_102423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	11110
Ga0114180_102910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	9138
Ga0114180_107272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Lacrimispora → Lacrimispora saccharolytica	3255

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114180_100099	Ga0114180_100099125	F073656	MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRSDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHNYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWTFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRNGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGICTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH*
Ga0114180_100206	Ga0114180_10020624	F105374	LRPGFGAAENIRYLVLSKGVFAMKKRVTLLVALCIWKVVAAQTPYGEMPERFRPDTLPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVANTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVARSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP*
Ga0114180_102423	Ga0114180_1024236	F076190	MAGGSITISAKNVFTAASRVSGRVWSLVRITVPNDLKSVRIRGRKTQNNSLYPYFQREPL
Ga0114180_102910	Ga0114180_1029101	F076190	SWARMAGGSITISAKNVFTVASRVSGYVWSLARITVPNGLKSVRIRGRKTQNNSLYSYFQREPL*
Ga0114180_107272	Ga0114180_1072721	F026592	QNRLRTASTQGIVALAAQGGVATLTEQSDATFSVMQLFSADRE*