3300008077: Human stool microbial communities from NIH, USA - visit 1, subject 763860675 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008077
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052891 | Ga0105964
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 763860675 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 204932377
• Sequencing Scaffolds: 15
• Novel Protein Genes: 16
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides stercorirosoris	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Lacrimispora → Lacrimispora saccharolytica	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F026592	Metagenome / Metatranscriptome	197	Y
F042910	Metagenome	157	N
F044554	Metagenome	154	N
F047125	Metagenome / Metatranscriptome	150	N
F050793	Metagenome	145	N
F051936	Metagenome	143	N
F055775	Metagenome	138	N
F059106	Metagenome	134	N
F067844	Metagenome	125	N
F068855	Metagenome	124	N
F076190	Metagenome	118	Y
F088920	Metagenome	109	Y
F089005	Metagenome	109	N
F101356	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105964_1000064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	141727
Ga0105964_1000735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis	39127
Ga0105964_1001653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	19250
Ga0105964_1003038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	9992
Ga0105964_1003925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7548
Ga0105964_1004989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	5688
Ga0105964_1005765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4838
Ga0105964_1005944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4649
Ga0105964_1006641	All Organisms → Viruses → Predicted Viral	4083
Ga0105964_1006719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	4038
Ga0105964_1007054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3840
Ga0105964_1007083	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides stercorirosoris	3821
Ga0105964_1007430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Lacrimispora → Lacrimispora saccharolytica	3620
Ga0105964_1013635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1935
Ga0105964_1042655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	688

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105964_1000064	Ga0105964_1000064144	F013656	MEKIYKEPNKSETETTINVLYSENMLSIYTNKVNLQKKLNKLLGTPTKEDKIKRSIAGSRWNISLDDKTKIQKIILKANIYEL*
Ga0105964_1000735	Ga0105964_10007351	F059106	QIFVWIVDLKVRERLTEYLKKDIKYHQVIIEVLV*
Ga0105964_1000982	Ga0105964_10009824	F101356	LDEKLQTDVGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFCVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIMQ*
Ga0105964_1001653	Ga0105964_10016532	F068855	VPTVEAQGPQVRKSLAPQGLQAEKERGNANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW*
Ga0105964_1003038	Ga0105964_10030381	F089005	LTKSKQCSIIALALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMY
Ga0105964_1003925	Ga0105964_100392510	F042910	AAPARRRGGGLHLLRRQREQLSLRVRFLIEEYDIAARHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDTAITTLTISAAGKISFQGLTLAPGAAVRIHHNAGVFAAEMVSDDSTVSILPYRTPDSADDLLLRPGVLNEIRVEAGSAAFVSGRCKGRYC*
Ga0105964_1004989	Ga0105964_10049898	F076190	SVKNVFTAASRVSGRVWSLVRITVPNDLKFVRIRVEKTQNNSLYPYFQREPL*
Ga0105964_1005765	Ga0105964_10057655	F067844	MNTLAAETASAWYLILNRKLQTLPIYKTQLSSHLPRPLTMGTQQVSAGAAVITPQHRSYRVPQGSPQVFGG
Ga0105964_1005944	Ga0105964_10059442	F047125	MDVALLLMVLGVMLSSFRAADALDHMRKEILRQEGKRRGWWS*
Ga0105964_1006641	Ga0105964_10066413	F055775	MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGAVAAIALN*
Ga0105964_1006719	Ga0105964_10067192	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFPFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL*
Ga0105964_1007054	Ga0105964_10070545	F050793	MRKQVLVPENVEMADIHAIQTRVKKHNLLTVVLLIPLFAGCALRESHETLGGIVFVLSMVLMVLGFVSGRGDEKRLPAYWAKYQQIHRMDSLLRANLVGVWLCAEARVAVYREGSGYRVQLGVLDEKTGAWENDEQDEVFPTLADVREYATQEGYEPMDVDFGQMTDEEFQQFLDRSRI*
Ga0105964_1007083	Ga0105964_10070836	F051936	FCPLARRGKALGFSVLQEHAVMTPVISIFFATLIIKYLSIHISIKK*
Ga0105964_1007430	Ga0105964_10074301	F026592	SNLLAANSILCCLRTASPQGIAALAAQGGVATLTERSDATFSVKQFSSADGE*
Ga0105964_1013635	Ga0105964_10136354	F059106	QIFVWIVDLKVRERLTEYLKKDIKYHRVIIGVLV*
Ga0105964_1042655	Ga0105964_10426552	F088920	VSANLHHYPAFGAGVILHLILHFSQKVAIFAPKRAFSLLFVPTLFFAGLSVLSPQTSPKISGQTSLYQPWLSPYCLFKD*