3300007978: Human throat microbial communities from NIH, USA - visit 1, subject 763496533 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007978
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052996 | Ga0111424
• Sample Name: Human throat microbial communities from NIH, USA - visit 1, subject 763496533 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 100998577
• Sequencing Scaffolds: 21
• Novel Protein Genes: 22
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Oribacterium → Oribacterium parvum	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F043235	Metagenome	156	N
F045567	Metagenome	152	N
F046433	Metagenome	151	N
F047508	Metagenome	149	N
F054110	Metagenome	140	N
F058221	Metagenome	135	N
F061927	Metagenome	131	N
F068942	Metagenome	124	N
F071328	Metagenome	122	N
F072446	Metagenome	121	N
F077405	Metagenome	117	N
F078842	Metagenome	116	N
F090517	Metagenome	108	N
F094007	Metagenome	106	N
F095633	Metagenome	105	N
F099454	Metagenome	103	N
F103433	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111424_100001	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	463504
Ga0111424_100005	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	263750
Ga0111424_100009	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	184908
Ga0111424_100012	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	134253
Ga0111424_100020	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella	112349
Ga0111424_100046	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	81477
Ga0111424_100196	All Organisms → cellular organisms → Bacteria	35326
Ga0111424_100659	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	15699
Ga0111424_100998	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	11625
Ga0111424_101512	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	8444
Ga0111424_101757	All Organisms → cellular organisms → Bacteria	7510
Ga0111424_102539	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	5639
Ga0111424_102587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	5552
Ga0111424_104878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Oribacterium → Oribacterium parvum	3295
Ga0111424_111113	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1634
Ga0111424_115373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1221
Ga0111424_115436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1218
Ga0111424_123155	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	832
Ga0111424_124299	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	794
Ga0111424_125563	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	756
Ga0111424_136772	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	522

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111424_100001	Ga0111424_10000124	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRHPKGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDSLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEDFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLFPGSTH*
Ga0111424_100001	Ga0111424_10000198	F047508	MLGHRLVEGRVKYPYLRCIGEYLRHSFDTEDVGWVVKRSELCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATIEDQDFHKVLYYMVRCELILSSP*
Ga0111424_100005	Ga0111424_10000563	F099454	MALTFVFTSCDRLTDEPTLEDRGYKYFDSTAQRKSFRVVTASGKPYNHKIDWHIIGILDSKSDTYLTKKVDTLSNGDFRISYDWVSFTVREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLASPSMKIIQQAK*
Ga0111424_100009	Ga0111424_10000914	F071328	MSQKHWTFTHIIRYIEEYERNPLLIERMKWEFILEGEYIVEFVKLCKHLVLERTIDPKKHQAAAIYLRYSLQLLLKKRRAIRRLGVEKEYVSAILRQYGIHYREYGDNEHRVFFLDTGINLYFSKHDQSSIYIIQRIEFSNEEYRSFILKVLPVKKSEW*
Ga0111424_100012	Ga0111424_10001291	F072446	MHEFDAQAHKNKFNPPTHPQMKKLVFLLFGLCLYGFTACDSDHEPTKPVRPFHGDTLAQIAWNFPYIVEHHYHSIPGIVPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTLNRHKKELETLARQLHALTLPTIGTSPVLCGVKSIKSVGVAENGRTYDLSWEMKLRIRDYSSRRKYNSGRIVTLDCEDTESMTARYVVQLGQIREHELAEHIQPELKFYLPVKRCMDFSSIRFDITLFNGEVLSFQHKLPSKSVLQELPNNSVLENYKQYGFEREATYFTTLWPVLEKEIER*
Ga0111424_100020	Ga0111424_10002093	F068942	MIRKILSLPTLALCLTLGSALFAGCNEDYIKNTETKVRWSNVKNPKYGDPINITLKAEGETFTTVGDHSQIFFGYDASTLDTFTRHRFSEVDKDTAYYKDIVIYMTRNERERTTTLKLVAPPNRTQQPKQFDFSIEVSPPGTYFFNVRQPALPAKAQ*
Ga0111424_100046	Ga0111424_10004651	F045567	MRQRDGHDTLTEELEGSITPLLYRAEGEARRPWVRMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDRIDMIDTETCGLVVEVRATVDEDTLPTLGDDEGGGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEMPSLSRERGCVVERVVR*
Ga0111424_100196	Ga0111424_10019614	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVLTAFLLALVVQKIRALFDRITASVFAVMLAFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTISISVLVPIIFFELVHKNVKIINLWKQAAPVFAATVVAFFGAYWVNFMSLTDYYGSSDKAANAINARASDRGISSIRSMRAYAVGNFKILRPETYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSAIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE*
Ga0111424_100659	Ga0111424_10065914	F095633	MRNYENSTEVGCREGLTEGELRTMGTLAMEATEELKKTTISKEAVLLGGVPFGSWDEFAKAVQEMAAHIYEPIPVKINTKRLIATAFLDDGGEMSVEEHSVPEEVFIDLSRTRCVVDADRNHKSYEFTCPALMEHPDGKLYLTRKAYVISVIDVNGSQEVDFNIIYGGLN*
Ga0111424_100998	Ga0111424_10099815	F094007	MKLKTVEVLELARPNRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYSDEDFTKRNRIIVEMCDLFGRIRRRAGFAERHRGRGDYDRARRIERNRGSDISEVGRLAINACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKKRSGWNKGCIDNNA*
Ga0111424_101512	Ga0111424_1015125	F033081	MHTDITVVYRPKKGVMAWLFRRVMPQDARPTFVWSRLVTEIENAGYFSRRKFSILAVGLIIMTIAMIKMLLFVPGLNQSVVSLLTRGLETFLPTGWATVTAWTVGMAGVFLMGDFTNYTPSQKFLHKIKATRYEMYNILLLLALLEEQAFRSGSEKWNWRERVRASVCFGLLHIANIWYSFAAGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIAISLIAVVVAVYLAIDIAKLL*
Ga0111424_101757	Ga0111424_1017574	F078842	MIISSIYKTADNDGLIAHVYEHLLAQYVLKRLQDNEFFVLGDIILSAKTYGDTCFMDAELYSPEAKKTYDEALREFDKLVIPEDAALRAASECGIEMNRNIAEVDRSELSKKLREVQISPWRKQIDMAYRKAHNESSVNTLFHTSYVKYSKESDDLFREYVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEVSISVGYRMFLGLLKKDDKIINQLSCDFLEYIKILSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMADSVRIRQMVNSIELDIYEVNS*
Ga0111424_102539	Ga0111424_1025392	F046433	MIELPTSPNALSELSPVAPPKLLSQAQDASRGNLMVYVKADNYLGTETSDPSFMKSRYKTTEYEAINDFVQFIEMIKHYLPDYMENCAKELIDELAFLGMPELNFAANALAKRLRHHLEVDNKPVYIDVGNSLSQYRAKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIGKSSKILFLDDWIVSGDQVKERIAGFEVDNDPESHEASVLVMAASGDYLDNGISAYSQYGGATYSVEACYRLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEKIDELSLPALANIVRPYRNGKNFDGLPRFRQLLEKE*
Ga0111424_102587	Ga0111424_1025872	F054110	VVLDVNYQPMIKKLLKALQMNGRRYVVDTRQSWSKFDKPCKVYIVSRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVRTYKGGD*
Ga0111424_104878	Ga0111424_1048784	F061927	MKNPIFILSAMLILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKESEAREYCECAMNKINENLSNDEIIDISMDNPPKDL
Ga0111424_111113	Ga0111424_1111132	F041827	MKKLVLLDELREGSTITFQYKNRNEIESVNIDGVGNSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDSQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNLGIERIEDLRYIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVGIHARVHNDPTYDEYLYEISADRSYIKEE*
Ga0111424_115373	Ga0111424_1153731	F077405	PWQGRALPTELFPRLLVAKQRGVFYGFIVLCQIKFVKIFFDWLKIIQK*
Ga0111424_115436	Ga0111424_1154361	F077405	QGRALPTELFPRLLVAKQRGVFYGFISLCQIKFVKKSFD*
Ga0111424_123155	Ga0111424_1231551	F042387	MKRIILFFMAGVFLVSFSRGNDKKTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKANYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPNGHFYLNPNNMVVVDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPTLIQKSTNLYGSGADSSEYKFQYEYKNNFP
Ga0111424_124299	Ga0111424_1242992	F058221	NKMGKIKNFQDLKNQKEELRAEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLADKFLFPSLEIGSAKLLSNALLKRVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDDFQQRETAKSLSKLI*
Ga0111424_125563	Ga0111424_1255631	F041827	ILKLFFMKHFLSALALGCLLLSCNRDLENNENNETPAPPKEERLVLASLFEYISNVRFQYKNGNEINRMTINEASIDFEYDTYGRIVKERRFDHKSDYGETIITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGTDTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNTKNTLRNMKGFPPLVVEFYIRPLTYELPFYNDIEHIEDLRFIDNIKTRDFHNGS
Ga0111424_136772	Ga0111424_1367721	F090517	LLLGLLFLASSCKNKKDTPRLQLSSVELRQTVWNGTLEYKNPKRDSYSVYLNFLSDSEVEVSGYDLKDPTYSRDLQVRYYYTITDRILTLKAQVNRELRPPMDQNTWYLIRKEPSLLVFQANAGNPDLEATLTLRKKL*