3300007853: Human stool microbial communities from NIH, USA - visit 1, subject 765560005 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007853
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053080 | Ga0114093
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 765560005 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 110014100
• Sequencing Scaffolds: 10
• Novel Protein Genes: 28
• Associated Families: 27

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctDOT22	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → [Eubacterium] rectale	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F051210	Metagenome / Metatranscriptome	144	Y
F051936	Metagenome	143	N
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F067844	Metagenome	125	N
F072445	Metagenome / Metatranscriptome	121	Y
F075481	Metagenome	119	N
F076653	Metagenome	118	N
F077313	Metagenome	117	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F083451	Metagenome	113	N
F083452	Metagenome	113	N
F085718	Metagenome	111	N
F089054	Metagenome	109	N
F089590	Metagenome	109	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F097172	Metagenome / Metatranscriptome	104	Y
F097493	Metagenome	104	Y
F099451	Metagenome	103	N
F102167	Metagenome	102	N
F106193	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114093_100100	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	146344
Ga0114093_100239	Not Available	86575
Ga0114093_100382	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	61477
Ga0114093_100529	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis	45937
Ga0114093_100725	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctDOT22	32069
Ga0114093_100839	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	26358
Ga0114093_101032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	19355
Ga0114093_101100	Not Available	17587
Ga0114093_101652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → [Eubacterium] rectale	9094
Ga0114093_109085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	949

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114093_100100	Ga0114093_100100100	F085718	MVIEFDFEIYKNGDYDKVYLRNGKEPRILCDNGKGNRPMVVMIEDDKADDYIILRYNETGRRNINGQSGLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSRNIGGNIYLQGSSKSNVSYYVGRLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDETAV*
Ga0114093_100100	Ga0114093_100100115	F078005	MKKSEFVKKLEKIIDMVKTEDDGFEYGGKVIFYKEDDDNCEINVRSIEMNLRVEANVMAGMDDMDFTCLMSEVYKQKVVKAIMMEKDDDEDN*
Ga0114093_100100	Ga0114093_100100134	F083451	MDRNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMKYRQEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSLQISFAVRSDELREMIENMVGDNIREGYDIFKEEAEMVNETDRSKIEEFNKKLNHD*
Ga0114093_100100	Ga0114093_100100143	F076653	MTIRDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSALQTLIRLTENAKHMFEDQPGVYDMIPYRGFFLRDDFLSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEESILAKELGYDINSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRENKFKMTDKVKRGANNWYYSGGTISCVDSFLGKKYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYNKGFKKRLAKRFNESLRGGGDLFGANLACMVCDHKDIDWEALRLWLDKYDEPNDKGMVNSPIQFMYLYLYYYFNK*
Ga0114093_100100	Ga0114093_10010015	F064725	MTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAIMSETVVKTNNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSHERMWPNAFDKYIKLI*
Ga0114093_100100	Ga0114093_1001002	F050794	MTEFNKRLSDKIGIECTMDILLPTDDDNANIIIEYNGIIKKLMREAEKLELDTDAIKDMMRDLLNELKDDVDLNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYSYISSI*
Ga0114093_100100	Ga0114093_10010033	F106193	LNFKDIIMGCNTCKEKALKAERERIERSMMNRPSSTVISDREYASRSTAGCMVMLDPLQTMERDVVSIYKQVRTKGGGVGISYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRAKYIKP*
Ga0114093_100100	Ga0114093_10010042	F075481	MRLRISLRAIFCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIKTSDLNADIVITERKFDTDKDVDPATGKRPVSSQTDTHIVIGRRDSAVTADSLGIDKTITGIEDIDKKTDIEHKDVDDKKESRWPIAITSISVLLILLVLIYLLNKMKVL*
Ga0114093_100100	Ga0114093_10010043	F089590	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWLREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFSDAYLVKVFKAVFKRINVFKMFSFSKNIPDETFDDIRRIADDEVKDKS*
Ga0114093_100100	Ga0114093_10010046	F042095	MAKILYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVDNPFNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGQNDYRIIFRSLAIQYRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDMPGLEFLVVSHTLYVNDGIPVDRLSRSKKLIYIDLQNMGQRMTVIPEAIISKTEVYYLKMFNMLDLRDIESSGIRNIKNMKNLQTLDLSSCYLDRYIKEFNDLPKLTSLNIASGPPDMWNYFDINTLPFFEVDKINPNITDFAFLDDWKSGERRTGWNDDNMSGRGLEHLTSFIAAHSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAICPTENQRPSGTEQAPEGFVKGQSNGSPATPMEKIYVLKNNYAQRWTIKPE*
Ga0114093_100100	Ga0114093_1001005	F077313	MGKYVIKRKIPKYQEAGEVTPIMPGNVVGLQGIGVEPLVSSTQIGFDIQQPDINTIDTSDLSALVDSNKKVDKSGSTDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVEQPGEAPMEAMGQKHADGGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGINTDERLNYYKTFNPVAYDAYMGASEGTRARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEDPDVKLDMPELIDPNTLPKTNTNAGKSNGGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGKYINEVEQGNVAQRTWADNVNSQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG*
Ga0114093_100100	Ga0114093_10010052	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLVKYYLNRKDDETIRSIQNLLVYWMSLDNAGRMDDPESTSFNLPDDYLWFSNIKGVFSYKGCEATDFVMWEAKNENIHELLGDENNRPSYDYRETFYSIGNGKVVVYESGFRTEEVKMTYYRRPVRVDLSGYINAAGIQSTDIDPELPDYLVEEILDMVAKQFSLNENELSRYRMDKDNVASFK*
Ga0114093_100100	Ga0114093_10010053	F089592	MKEILKSRKVLAEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGLDKNEIDKLVKQRVDNIMKPFEEMSQMDLSQTNLEFWDDAKDKIFMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPVFMNSMFCFVEKDNMKDFVQQREINKMNISYKFISALKKGGDDRQAVIDLLLYIGIVTRPDFTEDEYYTGSLSNWMNEKKTNVDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDVRTSAEFLATKKDFINIKANVLDEYEEIMSMSNIDDKSKTKKVKDIKKKDDVEEGDKIKEE*
Ga0114093_100100	Ga0114093_10010064	F058555	MKLVYSQQKIKKNIMETKVTLLQKMKSNFDKILTEKYIPRNIQTKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIRISDECKMAMIYLIIINVLKHVFLRKRMQDGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDINYQLISLKAWAEGEIRIALSDIVKYKHKASKVPRIKDMFVKKGESIYTCIDKNLDSDSRRRMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKKLIGIGMREISQSTIYRYISMFLDMCKKNISDLYDEVKKYNGIANTKDRKNVTIGYLRLLYKGKYMHILISTEYIKDVFLGEKSYEMSKAG*
Ga0114093_100100	Ga0114093_10010079	F102167	MDINQIKKYLPSGWDVVDLIDHGIIDLDIMNGKMMGEYVAVLMIKSYDKTNGHILTTFSFHDKDMDKLRMLIGNAIMAVGYRNNPLNGDGNTAIK*
Ga0114093_100100	Ga0114093_10010082	F083452	MSGRVKIKSKDKDKKPKIDVFKIIENRFKNMNELRDLIDMDPKKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGTKLSIDLIDKYVKRK*
Ga0114093_100100	Ga0114093_10010093	F080673	MDEIIKLQDEILSYLRNNITKDEAYYILTTDKDMIEVLISDKKDGSKRIKILDMEYTIERDDMLLLFDTDGVIDECLLVASYIGVNMYFRRQDVNAILYNINREKVMKYPYIAIQLDNIQTIEKRRVVFEITGHRMDDNKERIDFMFIYFMARLCV*
Ga0114093_100100	Ga0114093_10010098	F078006	MEDNILKRAAAELKEAGCRVFAWQDDTYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSRGSGSGCCVKEEATFDLATALDVLNEPLPRWCKSYGVYPEQYKDIDRWYNSDNYNKKIFKEI*
Ga0114093_100239	Ga0114093_10023926	F089054	MLTSGRFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQEINPWHKHSTYIRLKLREILKVNLTDITIIDIISLP*
Ga0114093_100382	Ga0114093_1003821	F051936	FFPLALRGKAFGFSVLQEHAVMTPVIIIFFATLIIRYLSIHISIKK*
Ga0114093_100529	Ga0114093_1005291	F051936	FPLALRGKAFGFSVLQEHAVMTPVISIAKKVLIIRYLSIHISIKK*
Ga0114093_100725	Ga0114093_10072517	F051210	MAIVNESKLINEAFSDQKVVDRLIGSSVSNEDARIRMGEYKKLFSRYNDLKEFNENTKMFSGYAETPLLSTQYFNASVASYVSSFAGFMSIERDFDQPNGLFYWFDVLGVTDYRSVIPNLGADNFENINSTGRFEADIQVTAETAYDYMIGRKIIPGTLRIKVLKKDGTKFELVDAGQGEFMAKAGVITASQISYANGQVKFTLGTALTPNDDVITVVGAEDVCGTPSNLNGAAPAKNENRFLAKMQQIGLSTVPDMLTAEYNIAALGAMKKATGSDMATFLFNKLRELYTKIINQRLVKTLVNSYVGNTYEVQMQTGIAGYHDYRSSVDFFNAELINIESELASKAVKGVTVTAYIGGMSATNQFQKGASIGKWEKNTKMTYINDLLGWYDGVPVLRSNDVPANDFYAIHKTADGQMAPLARGIYMPLTDTPTIGNYNNPTQMAAGIYYQEGIKSMAPELVQKCTIINA*
Ga0114093_100839	Ga0114093_10083936	F099451	LCPGEYASGLLIKKIMAIDKIKTVGQLRKVIENLSDDYEIEMRVRRKLSDDEVKELHNKYGRIYPYPYETQYVELEFDDVGVSDKVLCLGVELKDK*
Ga0114093_101032	Ga0114093_10103215	F026489	LVAKENQKTTSDFDALEPRKRGCSPLLTPKKWAAPKKTEDSRLFGVKVF*
Ga0114093_101100	Ga0114093_1011006	F072445	MASTSIESLVKSSNSYMNFIGYETYKDNNKEFLRSDLWEFTFFNPPKIVYYPGDTIFKARLNQVNTGIDTSVNGFEKRMRGNYVIFQQTGQNTSGQIQLSFTDREDQAISYFVDDWRQKIADRDTKYSFRKEDTVADARLVILNSSRIPVRTLEFYNCVIQDAGLDENGTAEDGADRSDVPLSLRFEHYRRIFDNL*
Ga0114093_101652	Ga0114093_1016522	F097172	VKGPKDFLSAAYSNIFYLWNPKEGFIMKKNVLKKLMCAVLATACVATAVVPAMADDVITAEAATKKVTSAYKYHLEGYDKNGYPVSGFSKTSFYKDLNSLPAVKTGKTTINVPAVTSSVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCLSEGIYKPVKEGKKYKLEYLYPDAVGNYGDLYENNYLARLRTILDNYKEEHPEYADVIEYDYNDYTDFVNKYPVDKIKFTTKLKKGHTYVYVIDNALGRTTCKPYFTTHGSDEQSCLYNTNYLKAYSFDMNIEYRK*
Ga0114093_106695	Ga0114093_1066951	F067844	MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQ
Ga0114093_109085	Ga0114093_1090851	F097493	MKNGTAYFYERGVEIDGTVYGIRTDSDILRIKRRIVNDKFAETDDNFDMDTEIAKIQHTSIIFKQPTSEQLSQIQSKTFDSMSDMKQYVQSVMNGDETMSQDEINAMLMLQIAELKAGVDGE*