3300007772: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS914_Anemone_DNA CLC_assembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007772
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111355 | Gp0128096 | Ga0105672
• Sample Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS914_Anemone_DNA CLC_assembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 352299040
• Sequencing Scaffolds: 42
• Novel Protein Genes: 45
• Associated Families: 44

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18	1
All Organisms → Viruses → Predicted Viral	3
Not Available	25
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR0-AD1-C239	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Vent Fluid, Hydrothermal Vents → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Anemone Vent, Axial Seamount, northeast Pacific Ocean
• Coordinates
  • Lat. (^o): 45.933177
  • Long. (^o): -130.013868
  • Alt. (m): N/A
  • Depth (m): 1541

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000060	Metagenome / Metatranscriptome	2944	Y
F000245	Metagenome / Metatranscriptome	1468	Y
F001625	Metagenome / Metatranscriptome	661	Y
F001756	Metagenome / Metatranscriptome	641	Y
F001955	Metagenome	612	Y
F003092	Metagenome / Metatranscriptome	508	Y
F003425	Metagenome / Metatranscriptome	487	N
F003706	Metagenome	473	N
F004630	Metagenome / Metatranscriptome	430	Y
F005684	Metagenome / Metatranscriptome	393	Y
F006552	Metagenome	370	Y
F009754	Metagenome / Metatranscriptome	313	Y
F011939	Metagenome / Metatranscriptome	285	Y
F012162	Metagenome / Metatranscriptome	283	Y
F013358	Metagenome / Metatranscriptome	272	N
F015147	Metagenome / Metatranscriptome	257	Y
F017722	Metagenome / Metatranscriptome	239	Y
F029246	Metagenome / Metatranscriptome	189	Y
F029559	Metagenome / Metatranscriptome	188	Y
F033078	Metagenome	178	Y
F035489	Metagenome	172	Y
F035723	Metagenome	171	Y
F036294	Metagenome / Metatranscriptome	170	Y
F037416	Metagenome	168	Y
F042024	Metagenome / Metatranscriptome	159	Y
F046469	Metagenome	151	Y
F047115	Metagenome / Metatranscriptome	150	Y
F047906	Metagenome / Metatranscriptome	149	N
F050430	Metagenome / Metatranscriptome	145	N
F052659	Metagenome / Metatranscriptome	142	N
F054935	Metagenome / Metatranscriptome	139	N
F058538	Metagenome / Metatranscriptome	135	N
F061256	Metagenome	132	N
F061288	Metagenome / Metatranscriptome	132	Y
F063362	Metagenome	129	Y
F066454	Metagenome / Metatranscriptome	126	N
F066854	Metagenome / Metatranscriptome	126	N
F066904	Metagenome / Metatranscriptome	126	Y
F071639	Metagenome / Metatranscriptome	122	Y
F089006	Metagenome	109	Y
F093972	Metagenome / Metatranscriptome	106	N
F097524	Metagenome / Metatranscriptome	104	Y
F101330	Metagenome / Metatranscriptome	102	N
F105343	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105672_1022365	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18	705
Ga0105672_1029134	All Organisms → Viruses → Predicted Viral	3469
Ga0105672_1037683	Not Available	2454
Ga0105672_1041062	All Organisms → Viruses → Predicted Viral	2096
Ga0105672_1044339	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3128
Ga0105672_1047836	Not Available	790
Ga0105672_1062415	All Organisms → cellular organisms → Archaea → Euryarchaeota	745
Ga0105672_1073202	Not Available	592
Ga0105672_1086271	All Organisms → cellular organisms → Bacteria → Proteobacteria	698
Ga0105672_1090368	Not Available	4302
Ga0105672_1101703	Not Available	1032
Ga0105672_1121688	All Organisms → Viruses → Predicted Viral	1155
Ga0105672_1132532	Not Available	570
Ga0105672_1135917	All Organisms → cellular organisms → Bacteria	1322
Ga0105672_1139266	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	573
Ga0105672_1140129	All Organisms → cellular organisms → Bacteria	3345
Ga0105672_1140288	Not Available	1297
Ga0105672_1180885	Not Available	544
Ga0105672_1190407	Not Available	1185
Ga0105672_1209093	Not Available	1427
Ga0105672_1217658	Not Available	593
Ga0105672_1253048	Not Available	1151
Ga0105672_1256081	All Organisms → cellular organisms → Bacteria → Proteobacteria	1191
Ga0105672_1264744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	684
Ga0105672_1290211	Not Available	568
Ga0105672_1297083	Not Available	1122
Ga0105672_1298561	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	584
Ga0105672_1324018	Not Available	747
Ga0105672_1324561	Not Available	786
Ga0105672_1353202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	627
Ga0105672_1361062	Not Available	541
Ga0105672_1367913	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	739
Ga0105672_1373282	Not Available	750
Ga0105672_1379975	Not Available	546
Ga0105672_1380357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	527
Ga0105672_1384174	Not Available	781
Ga0105672_1387336	Not Available	511
Ga0105672_1387659	Not Available	635
Ga0105672_1393198	Not Available	527
Ga0105672_1394381	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR0-AD1-C239	619
Ga0105672_1403568	Not Available	712
Ga0105672_1406287	Not Available	688

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105672_1022365	Ga0105672_10223651	F015147	MRKTTKKIKWLVSDLGLNELDAWLWMIGGAALTAAVLVLLTGGGEEVFRYWRVFFLKLM*
Ga0105672_1029134	Ga0105672_10291347	F042024	MLTTTGIIIMTIYTVTMLYSIVNDTTRKTSQRIGKILLSIGEGILLYTGSIWFVVLSLGAVVLSAAAILLVPVIKEALSLELENIASEGGVAWTVNKAVALTAGATSLVVVGVYCLMVTQGIAA*
Ga0105672_1037683	Ga0105672_10376834	F058538	MYSQYKTTVMNRHRLHELLSWVNRKYYLEYEVVQENRDVFYVLFHDLNNKITTAIQHQVHGATKPEH*
Ga0105672_1041062	Ga0105672_10410623	F061288	LKELNKQVKAGDLVSHNAVWHDYGVGLMIRKTGKIDTWGMRHDPDEHMRWWVSWTNAPSSPESNGCHITYESDVTITHTA*
Ga0105672_1044339	Ga0105672_10443392	F052659	MLLSGNPGTETRSTVFIDGRWFSSIPELNYQTIDKLQQGGVPDKVSWMKPSLRGRLRLVKLQAQERNLTIEDLNQSIRSKWVILWAEV*
Ga0105672_1047836	Ga0105672_10478361	F004630	MDGVMNHRKLMSEYYKDDGSVAKIYQVINGMDGEHSFFSITYKDASGTRITNEDFKYKSLRFVEDAAENWTLGIKQLLTE*
Ga0105672_1062415	Ga0105672_10624152	F005684	LLTVYDTEESPLSLMQVVRRKSEVREGRLCNRKLPRQAYYEPARGRFPDRGWNEHPHRSKSKQVCMASTGPG
Ga0105672_1073202	Ga0105672_10732021	F046469	MNMEYLAVALLSCLVGACSINQKTEAIQGEMPFVQGTPTKILLQEVPDLINVPTDGEGNPVKITVAVYKFPDVTGQRKQVGL
Ga0105672_1086271	Ga0105672_10862711	F001756	PKKKPCPKLEKNVNIKPNITTFKLKLLNILFYDL*
Ga0105672_1090368	Ga0105672_10903682	F050430	MDKKLKENLIVGIKIVGMLFFLIVLITTLVWPGGVDTLANLFYTKE*
Ga0105672_1101703	Ga0105672_11017032	F037416	MDEESKIMIEVQTKMLDLIAQYPPENTEPVIAMCFKLILDCYVERLGESDTTEFLQTAIESVRSGNHGLIRKDKEKILWN*
Ga0105672_1101703	Ga0105672_11017033	F047115	VKDPLEFRGPYQGIIRNLINNINICSRRLVETGEPGYDVAMKGYIKEVEELKTFIKKEEVRLGYYE*
Ga0105672_1121688	Ga0105672_11216881	F071639	WSNTVMALQGKITANRVVQSGGIKSKTIVARNMSITDGQSLSALTDVDVSQRAEGSMIIWDDSSSTFKVLGEIQNTNLSIIGGSF*
Ga0105672_1132532	Ga0105672_11325321	F089006	LAILNRNKKNADYMFKASDNVSPGYAAGDLKYNAELLADQLAEDAGVLYEDLGDLERIKFYGTAYDYLAKEMGMIRQMQKEVKNMVQLDALNKWDPTGRKPNASGGLAGILEV*
Ga0105672_1135917	Ga0105672_11359172	F054935	MKRRTFIKFTSLISSAIFLPLAQLFGAKPKPKNSLTTFVSDLPLQGSPFRKNCDSLDNYNDISFETMIDDIVHYRTPAKLRNKLILGIKTKDD*
Ga0105672_1139266	Ga0105672_11392662	F006552	MNQYPTVWEATPNVEIPLLISPVLKIKSSRINPAANIPKPIPIAKKAIDNLNNVGLAVFLNPIYEIVPITRPTKSPIRLRIISRKNSNYADSVTVLNKV*
Ga0105672_1140129	Ga0105672_11401294	F097524	MFESDNLYLPVAERRPFVNVQLKTVETISAAGTHLGPQ*
Ga0105672_1140288	Ga0105672_11402882	F036294	MGRGPTDETVVGVKSVADEGAVTYLRVKLPESDREVGAEGWNM*
Ga0105672_1153008	Ga0105672_11530082	F000245	MRTFKEYNLDKKLDKYVSDEIKKRKLAKFPVNATDDIKMRMKPNKPAFKFPSPNSDMMIHVFLRPMEGKKGMMAFNYQLEDK*
Ga0105672_1180885	Ga0105672_11808851	F035489	EDSSSFVFMGHSPSKQHANQYHIIWLDESLRHITWGLKPQFESMSTGLCAIQLALETGYDEIDVIGFSGLKDRNYQNIYDGTKNYTFDPAASNKVRVPETYVPLDASHWESVYIKLVQQYPKTKVNLV*
Ga0105672_1190407	Ga0105672_11904071	F066904	MRAGIQRGINRVAIHEKPKLAVMEHIAALGHRVEPAPAQTRHDFLVDGRIRVALRVAYPSASRRRVRVGERHYRYVYKAWNFNFHHRGEVGERYSDLFICVPLLPDQGVDLAQVFIIPWEAISGKTFYLPDSRRRYGGKFAVYRNAWHILRSMAETASGEKGKE*
Ga0105672_1209093	Ga0105672_12090931	F093972	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATIDKLWPRRDSMNFKVNHF
Ga0105672_1217658	Ga0105672_12176581	F001955	MIKELKTLLQKYFGISSPKPIATKKPTLVKVVKPHEKINSLVEEIGKDMFGVRVRVEWGRCPYCENITQMLSTRMGYFKCSICREMTKQYVNGKIAYLPVDNPHVLGDEPKS*
Ga0105672_1233871	Ga0105672_12338711	F000060	MAQKLNTEFNYRYQVIGDTPWERIKTLKGFLEGRIRALALEEVGKLKLQAQLAKLKHLQNSGNGLEHEILELKAEILEAESHEEALKEAFELTKDEIKILKKLLKELHDIAEPTRIKGYTDEEMFEANAANEFTVNIGREIQAEMIANGRPSAAKLRNAMSNPHTWSALKQIGLIPKKTKILEGNVNPQLKIE
Ga0105672_1253048	Ga0105672_12530484	F063362	MADFLTGIISLTLGVIVLSGVFITTVKDTNTTGWTSGETALWGLLTIAGAAGMVYGVLNVFGLA*
Ga0105672_1256081	Ga0105672_12560812	F011939	MALKAANAFSKRIWKMPKITMEQIEAALQKEVQAIDKSVKLVAVQAGKKKDCYRVTLLKDGKSGSAELKKDVIKRHLAGEGRGRQLRKALGKAVSHLSIRYDR*
Ga0105672_1264744	Ga0105672_12647442	F035723	MVNLVTNKAEETAHLRSKSKFYVAGWVANRECENPQKLPEECKGDKTVEEWHKEYLTGYGDSVANGECLMNT*
Ga0105672_1290211	Ga0105672_12902112	F013358	MSVRPKVVCDSCSATYIIVHELPEDMYTEPYCPFCGEEHEDIEED
Ga0105672_1297083	Ga0105672_12970831	F047906	VQEERRLFRLRGIAIVVALAAKFTQKRTVTKERTPDAIRVPVAHGPVVGLGVLAVRWHHAVTKVRAALRLKLLVVAKRVSRVEIKFAVTAKAGLVHSQRLAVANAVVIRIVVAERVA*
Ga0105672_1298561	Ga0105672_12985611	F101330	MWLQNNYTVSFCGFIGVCIGYFTGHQEICIMIGVGIGILIRIVQSKSK*NASG
Ga0105672_1324018	Ga0105672_13240181	F001625	MALTISTSDWTSANVRKTLSWQAALVSKLRVYAIKVTFGASDNYATNGVSADLKEGRISTLVAVIPTYNNGLHHVQYDKANEKIKLYGSGSGSSLVEVANTSSTTNSKIYEFLVIGY*
Ga0105672_1324561	Ga0105672_13245611	F003092	MFKKILLVLSLLFTFSCEDNIVEEESSMKLWLNGEEVDVEANYEKITTYGEEVEYLNTEDGQTYTKKILVIHFQKEGGRVELNKEHYAVVFTDWEGDTSNGLPIDEGQYQWPSVCPVCPRKCIHGAPSKWVRMEIIGDSDVAVSGEAHIESINESGDTWTISGNGEGIFYNPYAEANMEGRIEFTNLKVDTSQDNTPYFDYGGH*
Ga0105672_1353202	Ga0105672_13532021	F009754	QYPQGWLRMGDAVPGAGEINGVQTDPVYQYHSQKAWYFETSIAVTDVTELNTFVGFGAEAYVNPNAVPDDGIGFSHLADTTTIEFISRKDGAGTSFTMLEAGSTYTFADSTVATQDATTYGMPDNDVRLGFLFQPLGSERGQTAIQYKLFLNGNIVGTQAATTVPDDLLMELKIMYESKGILTNDLYTDYVQTVQQR*
Ga0105672_1361062	Ga0105672_13610622	F066854	MPEELQSVKLQVGLLQQDVEARGKQIDALLSKLDSTADKIVELTVEIKSLNSRQERHSKVDDEIRSELKLLHSRAGSIHDEIGKSERRVS
Ga0105672_1367913	Ga0105672_13679131	F066454	MFLLRRVFMSIRFDVLILINSGVTDRNEIMARLGINIRSVSNCVRFLVKEGWVEYSRESISVVGGDSFRITQVGIDKIKSSTVDDYRKSPKRKIPDYEVMRSHLGVGGDVTRSELINIWNELTDYYLPYEGDKEFTEIAVFPP*
Ga0105672_1373282	Ga0105672_13732821	F029559	AETATDVGVGKTLTGGVSGLCSSLTHASTRLAIASPKINLRKLWWNLPSGIDYTRIYFDGSDTEQTIAYLVAGNGYINYAGGGNHIGAIGMGSAAGNSSNVLGDVSVTTVGVAEHDTYMIGVEIGKLTGFELPIFFKNGQLGYAPNASGFSDVY*
Ga0105672_1379975	Ga0105672_13799752	F003425	MALVRVTLGGKRLGYVRNNKAGSTTIINYLGQLLWNEKPTTYSGTNVQDFCGQDSYIGREKGFESYYKELKECE
Ga0105672_1380357	Ga0105672_13803571	F058538	NRRRLHHLLSWVNHELHLDYEVIQENRDVFYVIFHDLDILKTVAIQKHLKSNPHTAN*
Ga0105672_1384174	Ga0105672_13841742	F012162	LLTEEQTKYYLNDMIQHYREKESNTMGNLSWQRSVAEYRRKTFEDMRIVLFGDDDNENKRATIT*
Ga0105672_1387336	Ga0105672_13873362	F003706	MMSEVSDLEIGKLIQKVDSLEVMVREQNDRLDRLDQQLERTRGIGIGVVLATVGLSGIGGSLFTRWLSGN*
Ga0105672_1387659	Ga0105672_13876592	F061256	MRTSKPYKTMKSILKIKTNSFLDTYKKNLFSEAMWKVEVEGFPPFYMDASSAGEVKMALKKKLKRPKEIKSIERIQKTDWKKDVLGRISGKNQEEPVDENEVQVKQWIKEDSLTDDLLIDAIKNVMKERI
Ga0105672_1393198	Ga0105672_13931982	F029246	MGSNLGLIGIGLVALFATSMIKFVAIAAIAWGALKVYQDWGAM*
Ga0105672_1394381	Ga0105672_13943811	F017722	LDTKELRSQAGALLDQAQTAMDQGEMDTFRRLVDEAQVTMTKADEIDAAASQVRKLRGEFNQPLNAIPVTSTDVAVYNAMDTTARIKNDYKPASWMKGLPAMAQPEWVLDLCGDNIKDQAQFMTDTFVKWMRSPSDNVFWKTASPDEVKAMQEDTNKLLCPVS*
Ga0105672_1403568	Ga0105672_14035682	F033078	MKDRTIKALPIYLQPNILSAVAYIHSAKPNLDKAIERINTLQKHLTDKEVM
Ga0105672_1406287	Ga0105672_14062872	F105343	MSELIGKIIKELEHVFDVLKSAIDINRKRIVELETKVKELERSKDVI*