Sample 3300007772

3300007772: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS914_Anemone_DNA CLC_assembly

Overview

Basic Information
IMG/M Taxon OID	3300007772 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111355 \| Gp0128096 \| Ga0105672
Sample Name	Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS914_Anemone_DNA CLC_assembly
Sequencing Status	Permanent Draft
Sequencing Center	Marine Biological Laboratory
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	352299040
Sequencing Scaffolds	42
Novel Protein Genes	45
Associated Families	44

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18	1
All Organisms → Viruses → Predicted Viral	3
Not Available	25
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR0-AD1-C239	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Vent Fluid, Hydrothermal Vents → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	Anemone Vent, Axial Seamount, northeast Pacific Ocean
Coordinates	Lat. (^o)	45.933177	Long. (^o)	-130.013868	Alt. (m)	N/A	Depth (m)	1541
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000060	Metagenome / Metatranscriptome	2944	Y
F000245	Metagenome / Metatranscriptome	1468	Y
F001625	Metagenome / Metatranscriptome	661	Y
F001756	Metagenome / Metatranscriptome	641	Y
F001955	Metagenome	612	Y
F003092	Metagenome / Metatranscriptome	508	Y
F003425	Metagenome / Metatranscriptome	487	N
F003706	Metagenome	473	N
F004630	Metagenome / Metatranscriptome	430	Y
F005684	Metagenome / Metatranscriptome	393	Y

Showing 1 to 10 of 44 entries

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0105672_1022365	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18	705	Open in IMG/M
Ga0105672_1029134	All Organisms → Viruses → Predicted Viral	3469	Open in IMG/M
Ga0105672_1037683	Not Available	2454	Open in IMG/M
Ga0105672_1041062	All Organisms → Viruses → Predicted Viral	2096	Open in IMG/M
Ga0105672_1044339	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3128	Open in IMG/M
Ga0105672_1047836	Not Available	790	Open in IMG/M
Ga0105672_1062415	All Organisms → cellular organisms → Archaea → Euryarchaeota	745	Open in IMG/M
Ga0105672_1073202	Not Available	592	Open in IMG/M
Ga0105672_1086271	All Organisms → cellular organisms → Bacteria → Proteobacteria	698	Open in IMG/M
Ga0105672_1090368	Not Available	4302	Open in IMG/M

Showing 1 to 10 of 42 entries

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Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105672_1022365	Ga0105672_10223651	F015147	MRKTTKKIKWLVSDLGLNELDAWLWMIGGAALTAAVLVLLTGGGEEVFRYWRVFFLKLM*
Ga0105672_1029134	Ga0105672_10291347	F042024	MLTTTGIIIMTIYTVTMLYSIVNDTTRKTSQRIGKILLSIGEGILLYTGSIWFVVLSLGAVVLSAAAILLVPVIKEALSLELENIASEGGVAWTVNKAVALTAGATSLVVVGVYCLMVTQGIAA*
Ga0105672_1037683	Ga0105672_10376834	F058538	MYSQYKTTVMNRHRLHELLSWVNRKYYLEYEVVQENRDVFYVLFHDLNNKITTAIQHQVHGATKPEH*
Ga0105672_1041062	Ga0105672_10410623	F061288	LKELNKQVKAGDLVSHNAVWHDYGVGLMIRKTGKIDTWGMRHDPDEHMRWWVSWTNAPSSPESNGCHITYESDVTITHTA*
Ga0105672_1044339	Ga0105672_10443392	F052659	MLLSGNPGTETRSTVFIDGRWFSSIPELNYQTIDKLQQGGVPDKVSWMKPSLRGRLRLVKLQAQERNLTIEDLNQSIRSKWVILWAEV*
Ga0105672_1047836	Ga0105672_10478361	F004630	MDGVMNHRKLMSEYYKDDGSVAKIYQVINGMDGEHSFFSITYKDASGTRITNEDFKYKSLRFVEDAAENWTLGIKQLLTE*
Ga0105672_1062415	Ga0105672_10624152	F005684	LLTVYDTEESPLSLMQVVRRKSEVREGRLCNRKLPRQAYYEPARGRFPDRGWNEHPHRSKSKQVCMASTGPG
Ga0105672_1073202	Ga0105672_10732021	F046469	MNMEYLAVALLSCLVGACSINQKTEAIQGEMPFVQGTPTKILLQEVPDLINVPTDGEGNPVKITVAVYKFPDVTGQRKQVGL
Ga0105672_1086271	Ga0105672_10862711	F001756	PKKKPCPKLEKNVNIKPNITTFKLKLLNILFYDL*
Ga0105672_1090368	Ga0105672_10903682	F050430	MDKKLKENLIVGIKIVGMLFFLIVLITTLVWPGGVDTLANLFYTKE*
Ga0105672_1101703	Ga0105672_11017032	F037416	MDEESKIMIEVQTKMLDLIAQYPPENTEPVIAMCFKLILDCYVERLGESDTTEFLQTAIESVRSGNHGLIRKDKEKILWN*
Ga0105672_1101703	Ga0105672_11017033	F047115	VKDPLEFRGPYQGIIRNLINNINICSRRLVETGEPGYDVAMKGYIKEVEELKTFIKKEEVRLGYYE*
Ga0105672_1121688	Ga0105672_11216881	F071639	WSNTVMALQGKITANRVVQSGGIKSKTIVARNMSITDGQSLSALTDVDVSQRAEGSMIIWDDSSSTFKVLGEIQNTNLSIIGGSF*
Ga0105672_1132532	Ga0105672_11325321	F089006	LAILNRNKKNADYMFKASDNVSPGYAAGDLKYNAELLADQLAEDAGVLYEDLGDLERIKFYGTAYDYLAKEMGMIRQMQKEVKNMVQLDALNKWDPTGRKPNASGGLAGILEV*
Ga0105672_1135917	Ga0105672_11359172	F054935	MKRRTFIKFTSLISSAIFLPLAQLFGAKPKPKNSLTTFVSDLPLQGSPFRKNCDSLDNYNDISFETMIDDIVHYRTPAKLRNKLILGIKTKDD*
Ga0105672_1139266	Ga0105672_11392662	F006552	MNQYPTVWEATPNVEIPLLISPVLKIKSSRINPAANIPKPIPIAKKAIDNLNNVGLAVFLNPIYEIVPITRPTKSPIRLRIISRKNSNYADSVTVLNKV*
Ga0105672_1140129	Ga0105672_11401294	F097524	MFESDNLYLPVAERRPFVNVQLKTVETISAAGTHLGPQ*
Ga0105672_1140288	Ga0105672_11402882	F036294	MGRGPTDETVVGVKSVADEGAVTYLRVKLPESDREVGAEGWNM*
Ga0105672_1153008	Ga0105672_11530082	F000245	MRTFKEYNLDKKLDKYVSDEIKKRKLAKFPVNATDDIKMRMKPNKPAFKFPSPNSDMMIHVFLRPMEGKKGMMAFNYQLEDK*
Ga0105672_1180885	Ga0105672_11808851	F035489	EDSSSFVFMGHSPSKQHANQYHIIWLDESLRHITWGLKPQFESMSTGLCAIQLALETGYDEIDVIGFSGLKDRNYQNIYDGTKNYTFDPAASNKVRVPETYVPLDASHWESVYIKLVQQYPKTKVNLV*
Ga0105672_1190407	Ga0105672_11904071	F066904	MRAGIQRGINRVAIHEKPKLAVMEHIAALGHRVEPAPAQTRHDFLVDGRIRVALRVAYPSASRRRVRVGERHYRYVYKAWNFNFHHRGEVGERYSDLFICVPLLPDQGVDLAQVFIIPWEAISGKTFYLPDSRRRYGGKFAVYRNAWHILRSMAETASGEKGKE*
Ga0105672_1209093	Ga0105672_12090931	F093972	MKIGVILGRGVEGVGVTKNVVEFQKLFPGVEIFATIDKLWPRRDSMNFKVNHF
Ga0105672_1217658	Ga0105672_12176581	F001955	MIKELKTLLQKYFGISSPKPIATKKPTLVKVVKPHEKINSLVEEIGKDMFGVRVRVEWGRCPYCENITQMLSTRMGYFKCSICREMTKQYVNGKIAYLPVDNPHVLGDEPKS*
Ga0105672_1233871	Ga0105672_12338711	F000060	MAQKLNTEFNYRYQVIGDTPWERIKTLKGFLEGRIRALALEEVGKLKLQAQLAKLKHLQNSGNGLEHEILELKAEILEAESHEEALKEAFELTKDEIKILKKLLKELHDIAEPTRIKGYTDEEMFEANAANEFTVNIGREIQAEMIANGRPSAAKLRNAMSNPHTWSALKQIGLIPKKTKILEGNVNPQLKIE
Ga0105672_1253048	Ga0105672_12530484	F063362	MADFLTGIISLTLGVIVLSGVFITTVKDTNTTGWTSGETALWGLLTIAGAAGMVYGVLNVFGLA*
Ga0105672_1256081	Ga0105672_12560812	F011939	MALKAANAFSKRIWKMPKITMEQIEAALQKEVQAIDKSVKLVAVQAGKKKDCYRVTLLKDGKSGSAELKKDVIKRHLAGEGRGRQLRKALGKAVSHLSIRYDR*
Ga0105672_1264744	Ga0105672_12647442	F035723	MVNLVTNKAEETAHLRSKSKFYVAGWVANRECENPQKLPEECKGDKTVEEWHKEYLTGYGDSVANGECLMNT*
Ga0105672_1290211	Ga0105672_12902112	F013358	MSVRPKVVCDSCSATYIIVHELPEDMYTEPYCPFCGEEHEDIEED
Ga0105672_1297083	Ga0105672_12970831	F047906	VQEERRLFRLRGIAIVVALAAKFTQKRTVTKERTPDAIRVPVAHGPVVGLGVLAVRWHHAVTKVRAALRLKLLVVAKRVSRVEIKFAVTAKAGLVHSQRLAVANAVVIRIVVAERVA*
Ga0105672_1298561	Ga0105672_12985611	F101330	MWLQNNYTVSFCGFIGVCIGYFTGHQEICIMIGVGIGILIRIVQSKSK*NASG
Ga0105672_1324018	Ga0105672_13240181	F001625	MALTISTSDWTSANVRKTLSWQAALVSKLRVYAIKVTFGASDNYATNGVSADLKEGRISTLVAVIPTYNNGLHHVQYDKANEKIKLYGSGSGSSLVEVANTSSTTNSKIYEFLVIGY*
Ga0105672_1324561	Ga0105672_13245611	F003092	MFKKILLVLSLLFTFSCEDNIVEEESSMKLWLNGEEVDVEANYEKITTYGEEVEYLNTEDGQTYTKKILVIHFQKEGGRVELNKEHYAVVFTDWEGDTSNGLPIDEGQYQWPSVCPVCPRKCIHGAPSKWVRMEIIGDSDVAVSGEAHIESINESGDTWTISGNGEGIFYNPYAEANMEGRIEFTNLKVDTSQDNTPYFDYGGH*
Ga0105672_1353202	Ga0105672_13532021	F009754	QYPQGWLRMGDAVPGAGEINGVQTDPVYQYHSQKAWYFETSIAVTDVTELNTFVGFGAEAYVNPNAVPDDGIGFSHLADTTTIEFISRKDGAGTSFTMLEAGSTYTFADSTVATQDATTYGMPDNDVRLGFLFQPLGSERGQTAIQYKLFLNGNIVGTQAATTVPDDLLMELKIMYESKGILTNDLYTDYVQTVQQR*
Ga0105672_1361062	Ga0105672_13610622	F066854	MPEELQSVKLQVGLLQQDVEARGKQIDALLSKLDSTADKIVELTVEIKSLNSRQERHSKVDDEIRSELKLLHSRAGSIHDEIGKSERRVS
Ga0105672_1367913	Ga0105672_13679131	F066454	MFLLRRVFMSIRFDVLILINSGVTDRNEIMARLGINIRSVSNCVRFLVKEGWVEYSRESISVVGGDSFRITQVGIDKIKSSTVDDYRKSPKRKIPDYEVMRSHLGVGGDVTRSELINIWNELTDYYLPYEGDKEFTEIAVFPP*
Ga0105672_1373282	Ga0105672_13732821	F029559	AETATDVGVGKTLTGGVSGLCSSLTHASTRLAIASPKINLRKLWWNLPSGIDYTRIYFDGSDTEQTIAYLVAGNGYINYAGGGNHIGAIGMGSAAGNSSNVLGDVSVTTVGVAEHDTYMIGVEIGKLTGFELPIFFKNGQLGYAPNASGFSDVY*
Ga0105672_1379975	Ga0105672_13799752	F003425	MALVRVTLGGKRLGYVRNNKAGSTTIINYLGQLLWNEKPTTYSGTNVQDFCGQDSYIGREKGFESYYKELKECE
Ga0105672_1380357	Ga0105672_13803571	F058538	NRRRLHHLLSWVNHELHLDYEVIQENRDVFYVIFHDLDILKTVAIQKHLKSNPHTAN*
Ga0105672_1384174	Ga0105672_13841742	F012162	LLTEEQTKYYLNDMIQHYREKESNTMGNLSWQRSVAEYRRKTFEDMRIVLFGDDDNENKRATIT*
Ga0105672_1387336	Ga0105672_13873362	F003706	MMSEVSDLEIGKLIQKVDSLEVMVREQNDRLDRLDQQLERTRGIGIGVVLATVGLSGIGGSLFTRWLSGN*
Ga0105672_1387659	Ga0105672_13876592	F061256	MRTSKPYKTMKSILKIKTNSFLDTYKKNLFSEAMWKVEVEGFPPFYMDASSAGEVKMALKKKLKRPKEIKSIERIQKTDWKKDVLGRISGKNQEEPVDENEVQVKQWIKEDSLTDDLLIDAIKNVMKERI
Ga0105672_1393198	Ga0105672_13931982	F029246	MGSNLGLIGIGLVALFATSMIKFVAIAAIAWGALKVYQDWGAM*
Ga0105672_1394381	Ga0105672_13943811	F017722	LDTKELRSQAGALLDQAQTAMDQGEMDTFRRLVDEAQVTMTKADEIDAAASQVRKLRGEFNQPLNAIPVTSTDVAVYNAMDTTARIKNDYKPASWMKGLPAMAQPEWVLDLCGDNIKDQAQFMTDTFVKWMRSPSDNVFWKTASPDEVKAMQEDTNKLLCPVS*
Ga0105672_1403568	Ga0105672_14035682	F033078	MKDRTIKALPIYLQPNILSAVAYIHSAKPNLDKAIERINTLQKHLTDKEVM
Ga0105672_1406287	Ga0105672_14062872	F105343	MSELIGKIIKELEHVFDVLKSAIDINRKRIVELETKVKELERSKDVI*

Showing 1 to 45 of 45 entries

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007772: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS914_Anemone_DNA CLC_assembly

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences